Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017507.1

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Forward (+)

19399 .. 20838

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017507.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggacggtctcaccgaagcagtgaacgacatgcacatcaccgattcagcggccaacaagaagaatcgcatccaagtctctaacaccaagaagcccctcttcttctatgtcaatctcgccaagaagtacatgcagctcaacaatgaggtggagctttccggtctcggaatggctattgctacagttgttaccattgctgagatcctcaagaacaatggattggctgttgagaagaagatcatcaccaaaactgttgacatgagggaggatgcaggagggcgcccaattcagaaagctaagattgagatacttctgggaaagtcagacaagtttgacgagataatggctgctgctgccgaggaagccaatgaatatgaggagcagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

5.26

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	136, 154, 296
AluI	AGCT	3 cut(s)	136, 154, 296
Alw26I	GTCTC	3 cut(s)	14, 82, 167
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	133, 347, 350, 353
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	4, 31, 235
BanI	GGYRCC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	145, 334, 337, 340
BcoDI	GTCTC	3 cut(s)	14, 82, 167
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	283
BisI	GCNGC	5 cut(s)	51, 134, 348, 351, 354
BlsI	GCNGC	5 cut(s)	52, 135, 349, 352, 355
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	2 cut(s)	78, 259
BpuEI	CTTGAG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	280
BsaI	GGTCTC	2 cut(s)	14, 167
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	69, 274
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	145, 334, 337, 340
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	14, 82, 167
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	2 cut(s)	14, 167
Bsp143I	GATC	2 cut(s)	201, 237
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	279
BspTNI	GGTCTC	2 cut(s)	14, 167
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	201, 237
BssNI	GRCGYC	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	8, 184, 253
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	198, 297
BstF5I	GGATG	2 cut(s)	69, 274
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	204, 240
BstMAI	GTCTC	3 cut(s)	14, 82, 167
BstMBI	GATC	2 cut(s)	201, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 362
BstNSI	RCATGY	2 cut(s)	34, 133
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	145, 334, 337, 340
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	69, 274
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	3 cut(s)	31, 130, 259
CviJI	RGCY	9 cut(s)	53, 94, 136, 154, 173, 224, 296, 347, 365
CviKI_1	RGCY	9 cut(s)	53, 94, 136, 154, 173, 224, 296, 347, 365
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	198, 297
DinI	GGCGCC	1 cut(s)	281
DpnI	GATC	2 cut(s)	203, 239
DpnII	GATC	2 cut(s)	201, 237
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco31I	GGTCTC	2 cut(s)	14, 167
EgeI	GGCGCC	1 cut(s)	281
EheI	GGCGCC	1 cut(s)	281
FaeI	CATG	3 cut(s)	34, 133, 262
FaiI	YATR	5 cut(s)	32, 108, 131, 260, 375
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	3 cut(s)	30, 129, 258
Fnu4HI	GCNGC	5 cut(s)	51, 134, 348, 351, 354
FokI	GGATG	2 cut(s)	56, 281
Fsp4HI	GCNGC	5 cut(s)	51, 134, 348, 351, 354
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	5 cut(s)	51, 134, 348, 351, 354
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	34, 133, 262
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	44, 64
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	3 cut(s)	4, 31, 235
Hpy166II	GTNNAC	2 cut(s)	25, 256
Hpy188I	TCNGA	3 cut(s)	167, 291, 325
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	25, 256
HpyCH4III	ACNGT	3 cut(s)	8, 184, 253
HpyCH4V	TGCA	3 cut(s)	34, 133, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 362
HpyF3I	CTNAG	2 cut(s)	198, 297
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	34, 133, 262
HspAI	GCGC	1 cut(s)	280
KasI	GGCGCC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	201, 237
LmnI	GCTCC	2 cut(s)	151, 379
LpnPI	CCDG	3 cut(s)	172, 258, 299
Lsp1109I	GCAGC	4 cut(s)	145, 334, 337, 340
LweI	GCATC	2 cut(s)	78, 259
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	203, 239
MboI	GATC	2 cut(s)	201, 237
MboII	GAAGA	5 cut(s)	73, 91, 94, 244, 247
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	1 cut(s)	285
Mly113I	GGCGCC	1 cut(s)	280
MnlI	CCTC	8 cut(s)	107, 139, 215, 255, 259, 269, 352, 370
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	353, 362
NarI	GGCGCC	1 cut(s)	280
NdeII	GATC	2 cut(s)	201, 237
NlaIII	CATG	3 cut(s)	34, 133, 262
NlaIV	GGNNCC	1 cut(s)	281
NmeAIII	GCCGAG	1 cut(s)	382
NspI	RCATGY	2 cut(s)	34, 133
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	44, 64
PkrI	GCNGC	5 cut(s)	52, 135, 349, 352, 355
PluTI	GGCGCC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SatI	GCNGC	5 cut(s)	51, 134, 348, 351, 354
Sau3AI	GATC	2 cut(s)	201, 237
SetI	ASST	4 cut(s)	138, 150, 156, 298
SfaNI	GCATC	2 cut(s)	78, 259
SfcI	CTRYAG	1 cut(s)	180
SfoI	GGCGCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	50
SspDI	GGCGCC	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	8, 184, 253
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	44, 64
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	4 cut(s)	133, 347, 350, 353
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	27
XceI	RCATGY	2 cut(s)	34, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.