pycom15g11110

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002909
Physical Location & Seq
Forward (+)
7490688 .. 7492275
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11110.3

Sequence Viewer

Length: 414 bp
ATGGAGGGTCTGGCAGAAGAAGTGAACAACTTGCAAATTACAGACGCATCATACAACAAGAACAATAAGAATCGCATCCAAGTTTCCAACACCAAAAAGCCCGTCTTCTTCTACGTCAACCTCGCCAAGAGGTACATGCAGCAGAACAACGAGGTGGAGCTATCCGCTCTCGGAATGGCTATTGCCACAGTGGTTACCATTGCTGAGATTCTGAAGAACAATGGATTGGCCGTTGAGAAGAGAATCAAGACTTCGACAATTAACATGAGGGAGGATGCAGGTGGGCGGCCAATTCAAAAGGCAAAGATTGAAATACTGCTCGGAAAATCAGAGAAGTTCGACGAGATAATGGCTGCTGATGCTGCTGATGCTGCTGCTGCTGCCGAGGAAGGCATCGAGTATGAGCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

138

Amino Acids

15.09

Weight (kDa)

5.13

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 167
AciI CCGC 2 cut(s) 165, 286
AcoI YGGCCR 2 cut(s) 228, 287
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 296, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
AoxI GGCC 2 cut(s) 228, 287
ApeKI GCWGC 7 cut(s) 139, 353, 362, 371, 374, 377, 380
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 7 cut(s) 151, 340, 349, 358, 361, 364, 367
BceAI ACGGC 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 8 cut(s) 140, 287, 354, 363, 372, 375, 378, 381
BlsI GCNGC 8 cut(s) 141, 288, 355, 364, 373, 376, 379, 382
BmsI GCATC 6 cut(s) 56, 84, 265, 349, 358, 402
BpiI GAAGAC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 75, 280
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 7 cut(s) 151, 340, 349, 358, 361, 364, 367
BshFI GGCC 2 cut(s) 230, 289
BsnI GGCC 2 cut(s) 230, 289
BspACI CCGC 2 cut(s) 165, 286
BspANI GGCC 2 cut(s) 230, 289
BspCNI CTCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 193
BstF5I GGATG 2 cut(s) 75, 280
BstMWI GCNNNNNNNGC 6 cut(s) 359, 362, 368, 371, 377, 380
BstNSI RCATGY 1 cut(s) 139
BstPI GGTNACC 1 cut(s) 193
BstV1I GCAGC 7 cut(s) 151, 340, 349, 358, 361, 364, 367
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 230, 289
BtsCI GGATG 2 cut(s) 75, 280
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 269
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 136, 265
CviJI RGCY 6 cut(s) 100, 160, 179, 230, 289, 353
CviKI_1 RGCY 6 cut(s) 100, 160, 179, 230, 289, 353
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 204
EaeI YGGCCR 2 cut(s) 228, 287
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
FaeI CATG 2 cut(s) 139, 268
FaiI YATR 4 cut(s) 52, 137, 266, 402
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 2 cut(s) 135, 264
Fnu4HI GCNGC 8 cut(s) 140, 287, 354, 363, 372, 375, 378, 381
FokI GGATG 2 cut(s) 62, 287
Fsp4HI GCNGC 8 cut(s) 140, 287, 354, 363, 372, 375, 378, 381
GluI GCNGC 8 cut(s) 140, 287, 354, 363, 372, 375, 378, 381
HaeIII GGCC 2 cut(s) 230, 289
HgaI GACGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 139, 268
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 3 cut(s) 70, 208, 243
Hpy166II GTNNAC 2 cut(s) 25, 118
Hpy188I TCNGA 4 cut(s) 173, 213, 323, 331
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 25, 118
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 34, 139, 278
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 362, 368, 371, 377, 380
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 139, 268
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 264
Lsp1109I GCAGC 7 cut(s) 151, 340, 349, 358, 361, 364, 367
LweI GCATC 6 cut(s) 56, 84, 265, 349, 358, 402
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 167
MboII GAAGA 5 cut(s) 29, 97, 100, 226, 250
MluCI AATT 3 cut(s) 36, 258, 291
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 6 cut(s) 123, 131, 145, 261, 265, 379
MseI TTAA 1 cut(s) 261
MwoI GCNNNNNNNGC 6 cut(s) 359, 362, 368, 371, 377, 380
NlaIII CATG 2 cut(s) 139, 268
NmeAIII GCCGAG 1 cut(s) 409
NspI RCATGY 1 cut(s) 139
PaqCI CACCTGC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 70, 208, 243
PkrI GCNGC 8 cut(s) 141, 288, 355, 364, 373, 376, 379, 382
PspEI GGTNACC 1 cut(s) 193
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 8 cut(s) 140, 287, 354, 363, 372, 375, 378, 381
SetI ASST 6 cut(s) 117, 123, 134, 156, 162, 283
SfaNI GCATC 6 cut(s) 56, 84, 265, 349, 358, 402
Sse9I AATT 3 cut(s) 36, 258, 291
SsiI CCGC 2 cut(s) 165, 286
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 254, 339, 396
TasI AATT 3 cut(s) 36, 258, 291
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 3 cut(s) 70, 208, 243
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 195
TseI GCWGC 7 cut(s) 139, 353, 362, 371, 374, 377, 380
TspRI CASTG 1 cut(s) 195
XceI RCATGY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.