Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Reverse (-)

23145023 .. 23146223

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29872.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTTTCCTCAAGATTCCTATCATTCCTTTCTCTCATTCCCTTAATCATCACCAACATGAGACCTACTCAAGCCACCGAATCATATCAGCACATCTTTGATGAATACATCTGTATTGGCAGTTCCTACAATAGCCTCACCTTCGGCAAAAACCTCGATCATCTCCTCTCCCCTCTCCTCTCATCCTCCTCCGATAACGCCGCGGCCACCGGGTTTTACAGTTCTTCCTATGGAGAAATCCCTGACAAAGTTTATGCAATCGGATACTGTAGAGGAGATCTCAAGCCCTCTGCCTGCGCTGATTGTCTCGCCTCCTCCACCTCTCTTCTTCTGGAATACGCTTGCGCTAATAAGAAGGAAGGAGGCGTAGGCTCCATAGATTGCACGCTGCGTTACTCCAATATCTCCATAAGTGGCAAAAGAGTCGACGCTCCAGCTATACCTATATACAAGTCGAATGACAAAGTCTCGTCGTCCGTCGAGCTTGATTTTAATAAACGGCTCACTAAGTTATTTGAAAGGTTAATAAGTGAAGCCGCCAAAGGTAGTGGTGCTCTGAAATTTGCTGTTGGGCACTCAAACGCTCCGGTTAGTTCTGGTATAACGATATACGGACTTGCACAGTGCAGTCCAGACTTGTCGGAGGAAGACTGCAATGGTTGCTTGATCAAGGGTTTAGGGCTGCTCCCATCATGTTGTTATAACTCTTGGACCTATTATAGTGCCAGCTGTAGCTTAAGGTATGATCCTTACCTCTTCTATGACGCCGCAAGTGATCCGAAACCACTGCCTCCGCCATCACCACCGCCAGCCACTACCACAAATAATTCAGGAGGAACCGAAAGTCCGACATTTCGGATGGTAATCACTACTCTTGTGCCAATCGTTGTTTCTATATGTTGCTTATTGAATCTCATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

308

Amino Acids

32.92

Weight (kDa)

5.66

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 134	1.5e-17	Salt stress response/antifungal
Stress-antifung	PF01657	161 - 249	3.1e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	1 cut(s)	203
AciI	CCGC	6 cut(s)	201, 203, 537, 768, 794, 806
AclWI	GGATC	2 cut(s)	740, 770
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	765
AflII	CTTAAG	1 cut(s)	736
AgsI	TTSAA	2 cut(s)	518, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	874, 906
AloI	GAACNNNNNNTCC	2 cut(s)	829, 861
AluBI	AGCT	4 cut(s)	437, 484, 729, 735
AluI	AGCT	4 cut(s)	437, 484, 729, 735
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	3 cut(s)	55, 311, 472
AlwI	GGATC	2 cut(s)	740, 770
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	388, 682
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	2 cut(s)	299, 347
AspS9I	GGNCC	1 cut(s)	711
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	43, 130, 792
AvaII	GGWCC	1 cut(s)	711
BaeGI	GKGCMC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	375, 669
BccI	CCATC	3 cut(s)	697, 805, 853
BceAI	ACGGC	1 cut(s)	515
BcgI	CGANNNNNNTGC	6 cut(s)	136, 170, 406, 440, 769, 803
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	55, 311, 472
BfmI	CTRYAG	2 cut(s)	268, 730
BfrI	CTTAAG	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	6 cut(s)	201, 204, 389, 537, 683, 768
BlsI	GCNGC	6 cut(s)	202, 205, 390, 538, 684, 769
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	711
BmiI	GGNNCC	2 cut(s)	373, 838
BmrFI	CCNGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	654
BplI	GAGNNNNNCTC	4 cut(s)	52, 84, 264, 296
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	54, 266
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	2 cut(s)	19, 863
BsaHI	GRCGYC	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	661
Bse8I	GATNNNNATC	2 cut(s)	19, 863
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	182, 864
BseJI	GATNNNNATC	2 cut(s)	19, 863
BseMI	GCAATG	1 cut(s)	661
BseRI	GAGGAG	5 cut(s)	155, 167, 178, 288, 304
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	375, 669
BsgI	GTGCAG	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	210, 587
BsmAI	GTCTC	3 cut(s)	55, 311, 472
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	556, 576
Bsp143I	GATC	5 cut(s)	157, 277, 666, 745, 775
BspACI	CCGC	6 cut(s)	201, 203, 537, 768, 794, 806
BspANI	GGCC	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	373, 838
BspPI	GGATC	2 cut(s)	740, 770
BspTI	CTTAAG	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	5 cut(s)	157, 277, 666, 745, 775
BssNI	GRCGYC	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	221, 269, 624
Bst6I	CTCTTC	2 cut(s)	330, 761
BstACI	GRCGYC	1 cut(s)	765
BstAFI	CTTAAG	1 cut(s)	736
BstAPI	GCANNNNNTGC	1 cut(s)	660
BstC8I	GCNNGC	5 cut(s)	295, 343, 386, 727, 810
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	182, 864
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	299, 347
BstKTI	GATC	5 cut(s)	160, 280, 669, 748, 778
BstMAI	GTCTC	3 cut(s)	55, 311, 472
BstMBI	GATC	5 cut(s)	157, 277, 666, 745, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	268, 730
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	375, 669
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	182, 864
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	2 cut(s)	629, 785
Cac8I	GCNNGC	5 cut(s)	295, 343, 386, 727, 810
CfoI	GCGC	2 cut(s)	299, 347
Cfr13I	GGNCC	1 cut(s)	711
Cfr42I	CCGCGG	1 cut(s)	204
CseI	GACGC	2 cut(s)	437, 773
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	2 cut(s)	58, 693
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	5 cut(s)	159, 279, 668, 747, 777
DpnII	GATC	5 cut(s)	157, 277, 666, 745, 775
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	330, 761
EarI	CTCTTC	2 cut(s)	330, 761
EciI	GGCGGA	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	711
FaeI	CATG	2 cut(s)	61, 696
FatI	CATG	2 cut(s)	57, 692
FbaI	TGATCA	1 cut(s)	666
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	6 cut(s)	201, 204, 389, 537, 683, 768
FokI	GGATG	2 cut(s)	169, 871
Fsp4HI	GCNGC	6 cut(s)	201, 204, 389, 537, 683, 768
GlaI	GCGC	2 cut(s)	298, 346
GluI	GCNGC	6 cut(s)	201, 204, 389, 537, 683, 768
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	210, 587
HgaI	GACGC	2 cut(s)	437, 773
HhaI	GCGC	2 cut(s)	299, 347
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	2 cut(s)	61, 696
Hin6I	GCGC	2 cut(s)	297, 345
HinP1I	GCGC	2 cut(s)	297, 345
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	4 cut(s)	15, 80, 423, 910
HpaII	CCGG	2 cut(s)	210, 587
HphI	GGTGA	3 cut(s)	43, 130, 792
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	8 cut(s)	193, 263, 558, 643, 780, 849, 858, 923
Hpy188III	TCNNGA	4 cut(s)	12, 332, 632, 831
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	3 cut(s)	431, 475, 482
HpyAV	CCTTC	3 cut(s)	151, 349, 353
HpyCH4III	ACNGT	3 cut(s)	221, 269, 624
HpyCH4V	TGCA	5 cut(s)	257, 384, 620, 627, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	660
HpyF3I	CTNAG	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	2 cut(s)	61, 696
HspAI	GCGC	2 cut(s)	297, 345
Ksp22I	TGATCA	1 cut(s)	666
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	5 cut(s)	157, 277, 666, 745, 775
LmnI	GCTCC	4 cut(s)	377, 436, 589, 690
Lsp1109I	GCAGC	2 cut(s)	375, 669
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	5 cut(s)	159, 279, 668, 747, 777
MboI	GATC	5 cut(s)	157, 277, 666, 745, 775
MboII	GAAGA	5 cut(s)	216, 317, 320, 659, 748
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	556, 576
MluCI	AATT	2 cut(s)	560, 826
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	621, 872
MseI	TTAA	4 cut(s)	44, 492, 524, 737
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	203, 729
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	2 cut(s)	210, 587
MspR9I	CCNGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	660
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	5 cut(s)	157, 277, 666, 745, 775
NlaIII	CATG	2 cut(s)	61, 696
NlaIV	GGNNCC	2 cut(s)	373, 838
PfeI	GAWTC	3 cut(s)	15, 80, 910
PflFI	GACNNNGTC	1 cut(s)	464
PkrI	GCNGC	6 cut(s)	202, 205, 390, 538, 684, 769
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	702
PspN4I	GGNNCC	2 cut(s)	373, 838
PspPI	GGNCC	1 cut(s)	711
PsrI	GAACNNNNNNTAC	2 cut(s)	106, 138
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	56
SacII	CCGCGG	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	4 cut(s)	44, 492, 524, 737
SatI	GCNGC	6 cut(s)	201, 204, 389, 537, 683, 768
Sau3AI	GATC	5 cut(s)	157, 277, 666, 745, 775
Sau96I	GGNCC	1 cut(s)	711
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	556, 576
SfcI	CTRYAG	2 cut(s)	268, 730
Sfr303I	CCGCGG	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	4 cut(s)	10, 69, 281, 736
SmoI	CTYRAG	4 cut(s)	10, 69, 281, 736
Sse9I	AATT	2 cut(s)	560, 826
SsiI	CCGC	6 cut(s)	201, 203, 537, 768, 794, 806
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	221, 269, 624
TaqI	TCGA	4 cut(s)	156, 426, 455, 480
TasI	AATT	2 cut(s)	560, 826
TauI	GCSGC	4 cut(s)	203, 206, 539, 770
TfiI	GAWTC	3 cut(s)	15, 80, 910
Tru1I	TTAA	4 cut(s)	44, 492, 524, 737
Tru9I	TTAA	4 cut(s)	44, 492, 524, 737
TscAI	CASTG	2 cut(s)	629, 792
TseI	GCWGC	2 cut(s)	388, 682
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	2 cut(s)	466, 627
TspRI	CASTG	2 cut(s)	629, 792
Tth111I	GACNNNGTC	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	711
XapI	RAATTY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.