Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Forward (+)

48892898 .. 48894265

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG290800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATCTCCTTAAGATTTCGATTATTCCTTTCACTCATTCCCATGATCATCATGATCACCAATATCAGGCCTACTCATCAAGCCAGTGAGTATTCATTTAAAAGCAACATCTGTTCTAAAAGCACCTTCAACGGCACCTTCAGCAAAAACCTCAATAATCTCTTCTCCTCCCTCCTCTCTTCAATCAACGCCACCACGTCCACCGGGTTTTACAGCTCCTCGTACGGAGAAATCCCTGACAAAGTTTACGCAATCGGATTCTGTAGAGGAGATCTCAAGCCCTCTGCATGCGCTGCTTGTCTTGCCGCCTCCACCGCCCTGATTGTCAAAAACGCTTGCCCTGATGCGAAGAATGGAGGTGTAGGCTCCATAAATTGCACGCTACGTTACTCCAACATCTCCATTAGTGGCATCAGAGTAGAAGCACCATCTATATCTGGCTACAGCCATGGTGACAATGTCTCATCATCCTCAAGGTTTGATTTTAATCAAAGGCTCACCACATTATTTGAAACATTAAGAAGTAAAGCCGCGGCGGGTAGTGTTCTTAAATTTGCTGTTGGGCACTCAAACGCTCCGGTTAGTTCTGGTATAACGATATACGGACTTGCGCAGTGCAGTCCAGACTTATCGGAAACAGACTGCAGTGTTTGCATAAGTAAGGGTTTGAAGCAGCTCCCACCATGTTGTTATAAATCTTGGAGTTATCTTGGTGCCAGCTGTAGCTTAAGGTATGATCCTGACCTCTTCTACGACCCCGCAACTGATCCGACACCACTGCCTCCGCCATCACCACCGCCAGCCACTACACCACTGCCTCCGCCATCACCACCGCCAGCCACTACCACAAGTAATTCTGGAGGAATCGAAAGTGGCACATCTCGGATGGTCATCACTACTCTTGTGCCAGTCGTGGTTTCCATGTTTCTAATTGTATCTCATTCTCTATCCAATGATCTGGTGTACTTTTTCGTTCAGTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

328

Amino Acids

34.92

Weight (kDa)

8.56

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	38 - 132	1.2e-19	Salt stress response/antifungal
Stress-antifung	PF01657	158 - 246	3.7e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc16I	TGCGCA	1 cut(s)	612
AccB1I	GGYRCC	2 cut(s)	134, 713
AccII	CGCG	1 cut(s)	533
AclWI	GGATC	2 cut(s)	731, 761
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	224, 965
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	2 cut(s)	10, 727
AgsI	TTSAA	4 cut(s)	130, 183, 512, 670
AjiI	CACGTC	1 cut(s)	198
AluBI	AGCT	4 cut(s)	216, 676, 720, 726
AluI	AGCT	4 cut(s)	216, 676, 720, 726
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	2 cut(s)	731, 761
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	293, 673
ApoI	RAATTY	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	293, 613
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	5 cut(s)	49, 464, 490, 783, 819
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	2 cut(s)	134, 713
BbvI	GCAGC	2 cut(s)	280, 685
BccI	CCATC	4 cut(s)	436, 796, 832, 880
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	760, 794
BclI	TGATCA	2 cut(s)	45, 54
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	466
BfmI	CTRYAG	4 cut(s)	262, 442, 643, 721
BfrI	CTTAAG	2 cut(s)	10, 727
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	5 cut(s)	294, 306, 531, 534, 674
BlsI	GCNGC	5 cut(s)	295, 307, 532, 535, 675
Bme1390I	CCNGG	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	198
BmiI	GGNNCC	3 cut(s)	136, 367, 715
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	2 cut(s)	334, 420
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	260, 457
BpuMI	CCSGG	1 cut(s)	205
BsaBI	GATNNNNATC	2 cut(s)	486, 890
BsaJI	CCNNGG	2 cut(s)	448, 531
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	84, 908
Bse8I	GATNNNNATC	2 cut(s)	486, 890
BseDI	CCNNGG	2 cut(s)	448, 531
BseGI	GGATG	2 cut(s)	467, 891
BseJI	GATNNNNATC	2 cut(s)	486, 890
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	84, 908
BseRI	GAGGAG	4 cut(s)	157, 164, 208, 282
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	280, 685
BsgI	GTGCAG	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	2 cut(s)	134, 713
BsiSI	CCGG	2 cut(s)	204, 578
BsiWI	CGTACG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
Bsp19I	CCATGG	1 cut(s)	448
BspANI	GGCC	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	533
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	136, 367, 715
BspMAI	CTGCAG	1 cut(s)	647
BspPI	GGATC	2 cut(s)	731, 761
BspT107I	GGYRCC	2 cut(s)	134, 713
BspTI	CTTAAG	2 cut(s)	10, 727
BsrI	ACTGG	2 cut(s)	84, 908
BssECI	CCNNGG	2 cut(s)	448, 531
BssMI	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
BssT1I	CCWWGG	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	167, 184, 752
BstAFI	CTTAAG	2 cut(s)	10, 727
BstAPI	GCANNNNNTGC	2 cut(s)	293, 651
BstC8I	GCNNGC	6 cut(s)	289, 337, 380, 718, 801, 837
BstDSI	CCRYGG	2 cut(s)	448, 531
BstF5I	GGATG	2 cut(s)	467, 891
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	293, 613
BstKTI	GATC	7 cut(s)	6, 48, 57, 274, 739, 769, 958
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 293, 302, 314, 651
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	4 cut(s)	262, 442, 643, 721
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	280, 685
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	70
BtgI	CCRYGG	2 cut(s)	448, 531
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	467, 891
BtsI	GCAGTG	4 cut(s)	620, 652, 776, 812
BtsIMutI	CAGTG	5 cut(s)	91, 620, 652, 776, 812
Cac8I	GCNNGC	6 cut(s)	289, 337, 380, 718, 801, 837
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	2 cut(s)	293, 613
Cfr42I	CCGCGG	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	223, 964
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	6 cut(s)	43, 52, 288, 449, 684, 922
CviQI	GTAC	2 cut(s)	223, 964
DpnI	GATC	7 cut(s)	5, 47, 56, 273, 738, 768, 957
DpnII	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	167, 184, 752
EarI	CTCTTC	3 cut(s)	167, 184, 752
EciI	GGCGGA	2 cut(s)	774, 810
Eco130I	CCWWGG	1 cut(s)	448
Eco147I	AGGCCT	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	6 cut(s)	46, 55, 291, 452, 687, 925
FatI	CATG	6 cut(s)	42, 51, 287, 448, 683, 921
FauI	CCCGC	2 cut(s)	529, 766
FbaI	TGATCA	2 cut(s)	45, 54
Fnu4HI	GCNGC	5 cut(s)	294, 306, 531, 534, 674
FokI	GGATG	2 cut(s)	454, 898
Fsp4HI	GCNGC	5 cut(s)	294, 306, 531, 534, 674
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	2 cut(s)	292, 612
GluI	GCNGC	5 cut(s)	294, 306, 531, 534, 674
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	204, 578
HhaI	GCGC	2 cut(s)	293, 613
Hin1II	CATG	6 cut(s)	46, 55, 291, 452, 687, 925
Hin6I	GCGC	2 cut(s)	291, 611
HinP1I	GCGC	2 cut(s)	291, 611
HinfI	GANTC	2 cut(s)	258, 864
HpaII	CCGG	2 cut(s)	204, 578
HphI	GGTGA	5 cut(s)	49, 464, 490, 783, 819
Hpy166II	GTNNAC	3 cut(s)	201, 247, 964
Hpy188I	TCNGA	5 cut(s)	257, 416, 634, 771, 885
Hpy188III	TCNNGA	4 cut(s)	52, 623, 740, 858
Hpy8I	GTNNAC	3 cut(s)	201, 247, 964
HpyAV	CCTTC	2 cut(s)	136, 148
HpyCH4IV	ACGT	2 cut(s)	197, 385
HpyCH4V	TGCA	5 cut(s)	287, 378, 618, 645, 654
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 293, 302, 314, 651
HpySE526I	ACGT	2 cut(s)	197, 385
Hsp92II	CATG	6 cut(s)	46, 55, 291, 452, 687, 925
HspAI	GCGC	2 cut(s)	291, 611
Ksp22I	TGATCA	2 cut(s)	45, 54
KspI	CCGCGG	1 cut(s)	534
Kzo9I	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
LmnI	GCTCC	4 cut(s)	221, 371, 580, 681
Lsp1109I	GCAGC	2 cut(s)	280, 685
LweI	GCATC	2 cut(s)	334, 420
MaeII	ACGT	2 cut(s)	197, 385
MaeIII	GTNAC	2 cut(s)	386, 452
MalI	GATC	7 cut(s)	5, 47, 56, 273, 738, 768, 957
MboI	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
MboII	GAAGA	4 cut(s)	154, 171, 361, 739
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	4 cut(s)	373, 551, 853, 930
MmeI	TCCRAC	2 cut(s)	417, 794
MseI	TTAA	6 cut(s)	11, 99, 486, 518, 549, 728
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	533, 720
MspCI	CTTAAG	2 cut(s)	10, 727
MspI	CCGG	2 cut(s)	204, 578
MspR9I	CCNGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	5 cut(s)	141, 293, 302, 314, 651
NciI	CCSGG	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
NlaIII	CATG	6 cut(s)	46, 55, 291, 452, 687, 925
NlaIV	GGNNCC	3 cut(s)	136, 367, 715
NmuCI	GTSAC	1 cut(s)	452
NsbI	TGCGCA	1 cut(s)	612
NspI	RCATGY	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	258, 864
Pfl23II	CGTACG	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	295, 307, 532, 535, 675
PsiI	TTATAA	1 cut(s)	693
PspLI	CGTACG	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	136, 367, 715
PstI	CTGCAG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	720
RsaI	GTAC	2 cut(s)	224, 965
RsaNI	GTAC	2 cut(s)	223, 964
RseI	CAYNNNNRTG	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	534
SaqAI	TTAA	6 cut(s)	11, 99, 486, 518, 549, 728
SatI	GCNGC	5 cut(s)	294, 306, 531, 534, 674
Sau3AI	GATC	7 cut(s)	3, 45, 54, 271, 736, 766, 955
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	334, 420
SfcI	CTRYAG	4 cut(s)	262, 442, 643, 721
Sfr303I	CCGCGG	1 cut(s)	534
SgrBI	CCGCGG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	4 cut(s)	10, 275, 472, 727
SmoI	CTYRAG	4 cut(s)	10, 275, 472, 727
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	4 cut(s)	373, 551, 853, 930
SseBI	AGGCCT	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	448
TaiI	ACGT	2 cut(s)	200, 388
TaqI	TCGA	2 cut(s)	19, 867
TasI	AATT	4 cut(s)	373, 551, 853, 930
TatI	WGTACW	1 cut(s)	963
TauI	GCSGC	3 cut(s)	308, 533, 536
TfiI	GAWTC	2 cut(s)	258, 864
Tru1I	TTAA	6 cut(s)	11, 99, 486, 518, 549, 728
Tru9I	TTAA	6 cut(s)	11, 99, 486, 518, 549, 728
TscAI	CASTG	5 cut(s)	91, 620, 652, 783, 819
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	293, 673
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	2 cut(s)	240, 618
TspRI	CASTG	5 cut(s)	91, 620, 652, 783, 819
Tth111I	GACNNNGTC	1 cut(s)	458
Vha464I	CTTAAG	2 cut(s)	10, 727
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.