Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Reverse (-)

23157774 .. 23158457

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29876.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGGCTTCAATTACTGAACTATTTCCTCGTTAACTCCAACTTTGAATACAAGTATTGTTTCGATGAAGGTAACTACACCGATTATAGTACCTACCAGAAAAATCTCAATCTTGCTCTATCAAATCTGACCAACACCATTAGTGACCCCAGCTATAAGGGCTTTCTCAGTGTCTCTTATGGAGAAAATGTTTCTGACGACGTTTACGCCACCGGTATTTGCAGAGGAGATGTGGCGGCAGATGTTTGCAGTACTTGCCTGGGTTTTGCCTATGGCGCTTATGCAAAGGTGTGTCCTTATCAGAAGCAGGCAATCATAGCGGACGACAACTGCAAGTTACACTACTCTGATATCTCCATGGATGGCATCCTGAAGATCAATCCTTGTGTATTTAGTTATACGCAACGGAACATATCTTCACCTGATGTGGATGCGTACAACCAACGGCTCATGGCGTTATTGGAAAGACTGAGAAGCGAAGCAGCAGCAGGTGGTCCTCTTCTTAAGTTTGCGAGTGGAAACGCAACCACTCCTTTCAACCAAACAGTAGTATATGCACTGGTACAGTGTACTCCCGATCTGTCTGAGAAAAACTGTAGTGATTGCTTGGATAAGGGTTTGGAACGCATTCCATTATTTGGGAATATGATAATGGGAGATATGTTAATCCCAGCTGTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

228

Amino Acids

25.09

Weight (kDa)

4.66

Isoelectric Point (pI)

20.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	20 - 117	8.9e-19	Salt stress response/antifungal
Stress-antifung	PF01657	141 - 206	6.1e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	2 cut(s)	236, 320
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	5 cut(s)	91, 253, 437, 564, 571
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	1 cut(s)	503
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	11, 47, 538
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	153, 674
AluI	AGCT	2 cut(s)	153, 674
Alw26I	GTCTC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	482, 485
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	23, 627
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	494, 497
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	3 cut(s)	237, 483, 486
BlsI	GCNGC	3 cut(s)	238, 484, 487
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	2 cut(s)	375, 421
BsaJI	CCNNGG	2 cut(s)	259, 357
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	259, 357
BseGI	GGATG	3 cut(s)	366, 367, 436
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	3 cut(s)	181, 461, 576
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	494, 497
BseYI	CCCAGC	2 cut(s)	149, 670
BshTI	ACCGGT	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	375, 577
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	236, 320
BspCNI	CTCAG	3 cut(s)	180, 462, 577
BspMI	ACCTGC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	259, 357
BssMI	GATC	2 cut(s)	375, 577
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	547, 567, 596
Bst6I	CTCTTC	1 cut(s)	504
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	167, 470, 585
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	366, 367, 436
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	2 cut(s)	378, 580
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	375, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 255, 275, 317
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	494, 497
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	366, 367, 436
BtsIMutI	CAGTG	3 cut(s)	175, 557, 572
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	5 cut(s)	90, 252, 436, 563, 570
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	2 cut(s)	358, 451
CviJI	RGCY	5 cut(s)	7, 153, 162, 448, 674
CviKI_1	RGCY	5 cut(s)	7, 153, 162, 448, 674
CviQI	GTAC	5 cut(s)	90, 252, 436, 563, 570
DdeI	CTNAG	3 cut(s)	167, 470, 585
DpnI	GATC	2 cut(s)	377, 579
DpnII	GATC	2 cut(s)	375, 577
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	361, 454
FatI	CATG	2 cut(s)	357, 450
Fnu4HI	GCNGC	3 cut(s)	237, 483, 486
FokI	GGATG	3 cut(s)	353, 374, 443
Fsp4HI	GCNGC	3 cut(s)	237, 483, 486
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	3 cut(s)	237, 483, 486
GsaI	CCCAGC	2 cut(s)	153, 674
HaeII	RGCGCY	1 cut(s)	279
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	361, 454
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	3 cut(s)	34, 205, 570
Hpy188I	TCNGA	5 cut(s)	129, 196, 303, 349, 586
Hpy188III	TCNNGA	2 cut(s)	370, 575
Hpy8I	GTNNAC	3 cut(s)	34, 205, 570
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	3 cut(s)	547, 567, 596
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	222, 249, 284, 333, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 255, 275, 317
HpyF3I	CTNAG	3 cut(s)	167, 470, 585
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	361, 454
HspAI	GCGC	1 cut(s)	276
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	375, 577
Lsp1109I	GCAGC	2 cut(s)	494, 497
LweI	GCATC	2 cut(s)	375, 421
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	4 cut(s)	71, 143, 336, 676
MalI	GATC	2 cut(s)	377, 579
MboI	GATC	2 cut(s)	375, 577
MboII	GAAGA	3 cut(s)	385, 408, 491
MluCI	AATT	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	38, 218, 507
MroXI	GAANNNNTTC	2 cut(s)	23, 627
MseI	TTAA	3 cut(s)	33, 504, 665
MspA1I	CMGCKG	1 cut(s)	674
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	4 cut(s)	159, 255, 275, 317
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	375, 577
NlaIII	CATG	2 cut(s)	361, 454
NmuCI	GTSAC	2 cut(s)	143, 676
PaqCI	CACCTGC	1 cut(s)	479
PctI	GAATGC	1 cut(s)	627
PdmI	GAANNNNTTC	2 cut(s)	23, 627
PflMI	CCANNNNNTGG	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	238, 484, 487
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	2 cut(s)	149, 670
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	5 cut(s)	91, 253, 437, 564, 571
RsaNI	GTAC	5 cut(s)	90, 252, 436, 563, 570
SaqAI	TTAA	3 cut(s)	33, 504, 665
SatI	GCNGC	3 cut(s)	237, 483, 486
Sau3AI	GATC	2 cut(s)	375, 577
Sau96I	GGNCC	1 cut(s)	494
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	8 cut(s)	73, 95, 155, 204, 291, 424, 493, 676
SfaNI	GCATC	2 cut(s)	375, 421
SfcI	CTRYAG	1 cut(s)	595
SinI	GGWCC	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	2 cut(s)	236, 320
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	547, 567, 596
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	11
TatI	WGTACW	2 cut(s)	251, 569
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	33, 504, 665
Tru9I	TTAA	3 cut(s)	33, 504, 665
TscAI	CASTG	3 cut(s)	175, 564, 572
TseFI	GTSAC	2 cut(s)	143, 676
TseI	GCWGC	2 cut(s)	482, 485
Tsp45I	GTSAC	2 cut(s)	143, 676
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	3 cut(s)	175, 564, 572
Van91I	CCANNNNNTGG	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	23, 627
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.