Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Reverse (-)

19765942 .. 19766787

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATCATCACGATCATCAATATCAGGCCTACTCATCAAGCCGATGAGTATTCATTTGAAAGCAACATCTGTTCTAAAAGCATCTTCAACGGTACCTTCGGCAAAAACCTCAATCATCTCTTCTCCTCCCTCCTCTCTTCAATCAACGCCACCACGTCCACCGGCTTTTACAGCTCCTCGTACGGAGAAATCCCTGACAAAGTTTACGCAATCAGATTCTGTAGAGGAGATCTCAAGCCCTCTGCATGCGCTGCTTGTCTTGCCGCCTCCACCGCCCTTATTGTCAAAAACGCTTGCCCTGATGCGAAGGATGGAGGTGTAGGCTCCATAAATTGCACGCTACGTTACTCCAATATCTCCATTAGTGGCATCAGAGTAGAAGCACCAGCTATATCTGGCTATAGCCATGGTGACAATGTCTCATCATCCTTAAGGTTTGATTTTAATCAAAGGCTCACCACATTATTTGAAACATTAAGAAGTAAAGCCGCGGCGGGTAGTGTTCTTAAATTTGCTATTGGGCACTCAAACGCTCCGGTCAGTTCTGGTATAACGATATACGGACTTGCGCAGTGCAGTCCAGACTTATCGGAAACAGACCGCAGTGTTTGCATAAGTAAGGGTTTGGAGCAGCTCCCACCATGTTGTTATAAATCTTGGAGTTATGTTGGTGCCAGCTGTAGCTTAAGGTATGATCCTGACCTCTTCTACGACCCCGCAACTGATCCGACACCACTGCCTCCGCCATCACCACCGCCAGCCACTACCACAAGTAATTCTGGAGGTAAATTTACCTGCATATATGTGGCCTCATATCATATATGTAGTGAATGTATTGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

282

Amino Acids

29.96

Weight (kDa)

6.5

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	29 - 118	1.8e-18	Salt stress response/antifungal
Stress-antifung	PF01657	147 - 232	6.5e-07	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc16I	TGCGCA	1 cut(s)	570
Acc36I	ACCTGC	1 cut(s)	803
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	2 cut(s)	92, 671
AccII	CGCG	1 cut(s)	491
AciI	CCGC	9 cut(s)	264, 273, 489, 491, 494, 601, 717, 743, 755
AclWI	GGATC	2 cut(s)	689, 719
AcsI	RAATTY	2 cut(s)	509, 788
AfaI	GTAC	2 cut(s)	94, 182
AflII	CTTAAG	2 cut(s)	430, 685
AgsI	TTSAA	4 cut(s)	59, 88, 141, 470
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	5 cut(s)	174, 389, 634, 678, 684
AluI	AGCT	5 cut(s)	174, 389, 634, 678, 684
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	689, 719
AlwNI	CAGNNNCTG	1 cut(s)	219
AoxI	GGCC	2 cut(s)	26, 807
ApeKI	GCWGC	2 cut(s)	251, 631
ApoI	RAATTY	2 cut(s)	509, 788
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	251, 571
AsuHPI	GGTGA	3 cut(s)	422, 448, 741
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	92, 671
BbvI	GCAGC	2 cut(s)	238, 643
BccI	CCATC	2 cut(s)	305, 754
BcgI	CGANNNNNNTGC	2 cut(s)	718, 752
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	424
BfmI	CTRYAG	3 cut(s)	220, 400, 679
BfrI	CTTAAG	2 cut(s)	430, 685
BfuAI	ACCTGC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
BlsI	GCNGC	5 cut(s)	253, 265, 490, 493, 633
BmgBI	CACGTC	1 cut(s)	156
BmiI	GGNNCC	3 cut(s)	94, 325, 673
BmsI	GCATC	3 cut(s)	90, 292, 378
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	406, 489
BsaWI	WCCGGW	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	406, 489
BseGI	GGATG	2 cut(s)	316, 425
BseJI	GATNNNNATC	1 cut(s)	444
BseRI	GAGGAG	4 cut(s)	115, 122, 166, 240
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	238, 643
BsgI	GTGCAG	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	28, 809
BshNI	GGYRCC	2 cut(s)	92, 671
BsiSI	CCGG	2 cut(s)	162, 536
BsiWI	CGTACG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	28, 809
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	3, 12, 229, 694, 724
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	9 cut(s)	264, 273, 489, 491, 494, 601, 717, 743, 755
BspANI	GGCC	2 cut(s)	28, 809
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	94, 325, 673
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	2 cut(s)	689, 719
BspT107I	GGYRCC	2 cut(s)	92, 671
BspTI	CTTAAG	2 cut(s)	430, 685
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	406, 489
BssMI	GATC	5 cut(s)	3, 12, 229, 694, 724
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	3 cut(s)	125, 142, 710
BstAFI	CTTAAG	2 cut(s)	430, 685
BstAPI	GCANNNNNTGC	2 cut(s)	251, 609
BstC8I	GCNNGC	5 cut(s)	247, 295, 338, 676, 759
BstDSI	CCRYGG	2 cut(s)	406, 489
BstF5I	GGATG	2 cut(s)	316, 425
BstFNI	CGCG	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	251, 571
BstKTI	GATC	5 cut(s)	6, 15, 232, 697, 727
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	5 cut(s)	3, 12, 229, 694, 724
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 251, 260, 272, 609
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	3 cut(s)	220, 400, 679
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	238, 643
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	28, 809
BtgI	CCRYGG	2 cut(s)	406, 489
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	316, 425
BtsI	GCAGTG	3 cut(s)	578, 610, 734
BtsIMutI	CAGTG	3 cut(s)	578, 610, 734
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	5 cut(s)	247, 295, 338, 676, 759
CaiI	CAGNNNCTG	1 cut(s)	219
CfoI	GCGC	2 cut(s)	251, 571
Cfr10I	RCCGGY	1 cut(s)	161
Cfr42I	CCGCGG	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	93, 181
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	3 cut(s)	246, 407, 642
CviQI	GTAC	2 cut(s)	93, 181
DpnI	GATC	5 cut(s)	5, 14, 231, 696, 726
DpnII	GATC	5 cut(s)	3, 12, 229, 694, 724
Eam1104I	CTCTTC	3 cut(s)	125, 142, 710
EarI	CTCTTC	3 cut(s)	125, 142, 710
EciI	GGCGGA	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	3 cut(s)	249, 410, 645
FatI	CATG	3 cut(s)	245, 406, 641
FauI	CCCGC	2 cut(s)	487, 724
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
FokI	GGATG	2 cut(s)	323, 412
Fsp4HI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	2 cut(s)	250, 570
GluI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	28, 809
HapII	CCGG	2 cut(s)	162, 536
HhaI	GCGC	2 cut(s)	251, 571
Hin1II	CATG	3 cut(s)	249, 410, 645
Hin6I	GCGC	2 cut(s)	249, 569
HinP1I	GCGC	2 cut(s)	249, 569
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	162, 536
HphI	GGTGA	3 cut(s)	422, 448, 741
Hpy166II	GTNNAC	2 cut(s)	159, 205
Hpy188I	TCNGA	4 cut(s)	215, 374, 592, 729
Hpy188III	TCNNGA	4 cut(s)	10, 581, 698, 780
Hpy8I	GTNNAC	2 cut(s)	159, 205
HpyAV	CCTTC	2 cut(s)	106, 301
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	2 cut(s)	155, 343
HpyCH4V	TGCA	5 cut(s)	245, 336, 576, 612, 798
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 251, 260, 272, 609
HpySE526I	ACGT	2 cut(s)	155, 343
Hsp92II	CATG	3 cut(s)	249, 410, 645
HspAI	GCGC	2 cut(s)	249, 569
KpnI	GGTACC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	3, 12, 229, 694, 724
LmnI	GCTCC	5 cut(s)	179, 329, 538, 628, 639
Lsp1109I	GCAGC	2 cut(s)	238, 643
LweI	GCATC	3 cut(s)	90, 292, 378
MaeII	ACGT	2 cut(s)	155, 343
MaeIII	GTNAC	2 cut(s)	344, 410
MalI	GATC	5 cut(s)	5, 14, 231, 696, 726
MboI	GATC	5 cut(s)	3, 12, 229, 694, 724
MboII	GAAGA	4 cut(s)	76, 112, 129, 697
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	4 cut(s)	331, 509, 775, 788
MmeI	TCCRAC	1 cut(s)	752
MseI	TTAA	6 cut(s)	431, 444, 476, 507, 686, 844
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	491, 678
MspCI	CTTAAG	2 cut(s)	430, 685
MspI	CCGG	2 cut(s)	162, 536
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	171, 251, 260, 272, 609
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	3, 12, 229, 694, 724
NlaIII	CATG	3 cut(s)	249, 410, 645
NlaIV	GGNNCC	3 cut(s)	94, 325, 673
NmuCI	GTSAC	1 cut(s)	410
NsbI	TGCGCA	1 cut(s)	570
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	216
Pfl23II	CGTACG	1 cut(s)	180
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	5 cut(s)	253, 265, 490, 493, 633
PsiI	TTATAA	1 cut(s)	651
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	94, 325, 673
PstNI	CAGNNNCTG	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	678
RsaI	GTAC	2 cut(s)	94, 182
RsaNI	GTAC	2 cut(s)	93, 181
RseI	CAYNNNNRTG	1 cut(s)	803
SacII	CCGCGG	1 cut(s)	492
SaqAI	TTAA	6 cut(s)	431, 444, 476, 507, 686, 844
SatI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
Sau3AI	GATC	5 cut(s)	3, 12, 229, 694, 724
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	90, 292, 378
SfcI	CTRYAG	3 cut(s)	220, 400, 679
Sfr303I	CCGCGG	1 cut(s)	492
SgrBI	CCGCGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	3 cut(s)	233, 430, 685
SmoI	CTYRAG	3 cut(s)	233, 430, 685
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	331, 509, 775, 788
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	9 cut(s)	264, 273, 489, 491, 494, 601, 717, 743, 755
StuI	AGGCCT	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	2 cut(s)	158, 346
TasI	AATT	4 cut(s)	331, 509, 775, 788
TauI	GCSGC	3 cut(s)	266, 491, 494
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	6 cut(s)	431, 444, 476, 507, 686, 844
Tru9I	TTAA	6 cut(s)	431, 444, 476, 507, 686, 844
TscAI	CASTG	3 cut(s)	578, 610, 741
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	251, 631
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	2 cut(s)	198, 576
TspRI	CASTG	3 cut(s)	578, 610, 741
Tth111I	GACNNNGTC	1 cut(s)	416
Vha464I	CTTAAG	2 cut(s)	430, 685
XapI	RAATTY	2 cut(s)	509, 788
XceI	RCATGY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.