Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Forward (+)

39190992 .. 39192045

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCATATGGACCGCGCACAGATTAAGGCAGGCATAATGGTTTCCACTAGATTTCAACTATTTCTTCCCCTAATTTTGTTACCGGTCATCGGTACTCAAGCCGTTGATATGTTCAACTGTCTTGACGCCTTTCCTAACACCACCATTCTCAATAGTACCTATCTCAAAAACGGCGAAAACTCTGACAAAGTTTATGCAATCGGGCTCTGTAGAGGGGATCTGAAGCATGATGCTTGCGTTACTTGCCTCAACGCCTCCAGATATGATCTCATGGAGGTTTGCCCTAATGACAGGGAGGCAAGTTTGTGGACAGAAAAATGCAAGTTACGCTACTCGAACCACTCCATGCATGGAACCGTGGAATTGATTCCATCTTCCACGGGGTACAGCAACAAAAATGTATCGTCGTCGTTGTCGGTCCTGGAAGGGTTTAACCAACGGCTGATGGCGTTGCTGGGAGTACTAAAAGTTGAAGTAGCGGCTGGCGGTGATGTTGTTAAGTTTGCAGTGGGAAATGCAAATGTTTCTATATATTCTAAGAATATAAGTACAATATATGGACTTGCGCAGTGCAGTCCAGATTTTTCAGAGCTGGGATGTAACAATTGCTTAGATGAAGCTTTAGAAAAGATCCAAATGTATTGTTATGGGAGTGGTTTTGGGAGCTATGTTAATCCCAGCTGTGACGTATATTATCAGGTTGATCACCTCTTCTTTGACCCTGCAGCTCAGACGGTACCAGTGGCATTGCCACCATTAATATCTCCACCTTCAGCCAATGCAAGAGGAAAGAAGAGCAACATATCTCAAACTCTCATCGTTATTTTCGTGTCGATCCTACTTCCTTTCATCGTTATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

288

Amino Acids

31.36

Weight (kDa)

5.94

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	567
Acc65I	GGTACC	1 cut(s)	736
AccB1I	GGYRCC	1 cut(s)	736
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	13, 479, 486
AclWI	GGATC	3 cut(s)	225, 625, 829
AcuI	CTGAAG	2 cut(s)	242, 756
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	6 cut(s)	94, 157, 386, 462, 550, 738
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	56, 115, 473
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	5 cut(s)	592, 620, 666, 681, 728
AluI	AGCT	5 cut(s)	592, 620, 666, 681, 728
AlwI	GGATC	3 cut(s)	225, 625, 829
ApeKI	GCWGC	1 cut(s)	725
AseI	ATTAAT	1 cut(s)	758
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	736
AspLEI	GCGC	2 cut(s)	17, 568
AspS9I	GGNCC	2 cut(s)	10, 418
AsuHPI	GGTGA	2 cut(s)	500, 698
AvaII	GGWCC	2 cut(s)	10, 418
BanI	GGYRCC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	737
BccI	CCATC	2 cut(s)	379, 439
BceAI	ACGGC	3 cut(s)	86, 187, 455
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	703
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	2 cut(s)	208, 723
BisI	GCNGC	2 cut(s)	480, 726
BlsI	GCNGC	2 cut(s)	481, 727
BmcAI	AGTACT	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	2 cut(s)	10, 418
BmgT120I	GGNCC	2 cut(s)	10, 418
BmiI	GGNNCC	2 cut(s)	355, 738
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	357, 378
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	740
Bse3DI	GCAATG	1 cut(s)	746
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	357, 378
BseGI	GGATG	1 cut(s)	602
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	1 cut(s)	740
BseXI	GCAGC	1 cut(s)	737
BseYI	CCCAGC	3 cut(s)	454, 592, 677
BsgI	GTGCAG	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	736
BshTI	ACCGGT	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	217, 265, 630, 703, 834
BspACI	CCGC	3 cut(s)	13, 479, 486
BspCNI	CTCAG	1 cut(s)	742
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	355, 738
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	3 cut(s)	225, 625, 829
BspQI	GCTCTTC	1 cut(s)	788
BspT107I	GGYRCC	1 cut(s)	736
BsrDI	GCAATG	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	357, 378
BssMI	GATC	5 cut(s)	217, 265, 630, 703, 834
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	119, 358, 736
Bst6I	CTCTTC	2 cut(s)	716, 788
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	31, 235, 484
BstDEI	CTNAG	3 cut(s)	537, 610, 729
BstDSI	CCRYGG	2 cut(s)	357, 378
BstF5I	GGATG	1 cut(s)	602
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	17, 568
BstKTI	GATC	5 cut(s)	220, 268, 633, 706, 837
BstMBI	GATC	5 cut(s)	217, 265, 630, 703, 834
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 327
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	208, 723
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	737
BstX2I	RGATCY	2 cut(s)	217, 630
BstYI	RGATCY	2 cut(s)	217, 630
BtgI	CCRYGG	2 cut(s)	357, 378
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	2 cut(s)	513, 575
BtsIMutI	CAGTG	3 cut(s)	513, 575, 747
Cac8I	GCNNGC	3 cut(s)	31, 235, 484
CfoI	GCGC	2 cut(s)	17, 568
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	10, 418
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	6 cut(s)	93, 156, 385, 461, 549, 737
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	4 cut(s)	227, 271, 346, 350
CviQI	GTAC	6 cut(s)	93, 156, 385, 461, 549, 737
DdeI	CTNAG	3 cut(s)	537, 610, 729
DpnI	GATC	5 cut(s)	219, 267, 632, 705, 836
DpnII	GATC	5 cut(s)	217, 265, 630, 703, 834
Eam1104I	CTCTTC	2 cut(s)	716, 788
EarI	CTCTTC	2 cut(s)	716, 788
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	10, 418
Eco57I	CTGAAG	2 cut(s)	242, 756
EcoRII	CCWGG	1 cut(s)	420
EcoT22I	ATGCAT	2 cut(s)	6, 351
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	4 cut(s)	230, 274, 349, 353
FatI	CATG	4 cut(s)	226, 270, 345, 349
FauNDI	CATATG	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	2 cut(s)	480, 726
FokI	GGATG	1 cut(s)	609
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	480, 726
FspBI	CTAG	1 cut(s)	48
FspI	TGCGCA	1 cut(s)	567
GlaI	GCGC	2 cut(s)	16, 567
GluI	GCNGC	2 cut(s)	480, 726
GsaI	CCCAGC	3 cut(s)	458, 596, 681
GsuI	CTGGAG	1 cut(s)	241
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	2 cut(s)	17, 568
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	230, 274, 349, 353
Hin6I	GCGC	2 cut(s)	15, 566
HinP1I	GCGC	2 cut(s)	15, 566
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	500, 698
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	4 cut(s)	184, 222, 589, 732
Hpy188III	TCNNGA	3 cut(s)	122, 258, 578
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	2 cut(s)	409, 412
HpyAV	CCTTC	2 cut(s)	419, 780
HpyCH4III	ACNGT	3 cut(s)	119, 358, 736
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	9 cut(s)	4, 197, 321, 349, 506, 518, 573, 725, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 327
HpyF3I	CTNAG	3 cut(s)	537, 610, 729
HpySE526I	ACGT	1 cut(s)	687
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	230, 274, 349, 353
HspAI	GCGC	2 cut(s)	15, 566
KpnI	GGTACC	1 cut(s)	740
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	5 cut(s)	217, 265, 630, 703, 834
LguI	GCTCTTC	1 cut(s)	788
LmnI	GCTCC	1 cut(s)	663
Lsp1109I	GCAGC	1 cut(s)	737
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	5 cut(s)	78, 238, 324, 599, 683
MalI	GATC	5 cut(s)	219, 267, 632, 705, 836
MboI	GATC	5 cut(s)	217, 265, 630, 703, 834
MboII	GAAGA	4 cut(s)	56, 366, 703, 805
MfeI	CAATTG	1 cut(s)	604
MflI	RGATCY	2 cut(s)	217, 630
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	3 cut(s)	72, 362, 604
MnlI	CCTC	7 cut(s)	206, 257, 265, 268, 289, 719, 779
Mph1103I	ATGCAT	2 cut(s)	6, 351
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	5 cut(s)	24, 432, 498, 672, 758
MslI	CAYNNNNRTG	1 cut(s)	854
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	243, 327
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	5 cut(s)	217, 265, 630, 703, 834
NlaIII	CATG	4 cut(s)	230, 274, 349, 353
NlaIV	GGNNCC	2 cut(s)	355, 738
NmuCI	GTSAC	1 cut(s)	683
NsbI	TGCGCA	1 cut(s)	567
NsiI	ATGCAT	2 cut(s)	6, 351
PciSI	GCTCTTC	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	420
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	481, 727
PshBI	ATTAAT	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	3 cut(s)	454, 592, 677
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	355, 738
PspPI	GGNCC	2 cut(s)	10, 418
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	217, 630
PvuII	CAGCTG	1 cut(s)	681
RsaI	GTAC	6 cut(s)	94, 157, 386, 462, 550, 738
RsaNI	GTAC	6 cut(s)	93, 156, 385, 461, 549, 737
RseI	CAYNNNNRTG	1 cut(s)	854
SapI	GCTCTTC	1 cut(s)	788
SaqAI	TTAA	5 cut(s)	24, 432, 498, 672, 758
SatI	GCNGC	2 cut(s)	480, 726
Sau3AI	GATC	5 cut(s)	217, 265, 630, 703, 834
Sau96I	GGNCC	2 cut(s)	10, 418
ScaI	AGTACT	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	208, 723
SinI	GGWCC	2 cut(s)	10, 418
SmiMI	CAYNNNNRTG	1 cut(s)	854
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	72, 362, 604
SsiI	CCGC	3 cut(s)	13, 479, 486
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	119, 358, 736
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	2 cut(s)	335, 833
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	3 cut(s)	72, 362, 604
TatI	WGTACW	2 cut(s)	460, 548
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	5 cut(s)	24, 432, 498, 672, 758
Tru9I	TTAA	5 cut(s)	24, 432, 498, 672, 758
TscAI	CASTG	3 cut(s)	513, 575, 747
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	2 cut(s)	630, 838
TspRI	CASTG	3 cut(s)	513, 575, 747
VpaK11BI	GGWCC	2 cut(s)	10, 418
VspI	ATTAAT	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	462
Zsp2I	ATGCAT	2 cut(s)	6, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.