Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Forward (+)

48732660 .. 48733514

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATCTCCTCAAGATTTCGATTATTCCTTTCACTCATTCCCATGATCATCACCATCACCAATATCAGGCCTACTCATCAGGCCGGTGATGAGTATTCATTTGAAAGCAACATCTGTTCTAAAAGCACCTTCAACGGCACCTTTGGCAAAAACCTCAATCATCTCTTCTCCTCCCTCCTCTCTTCAATCAACGCCGCCACGTCCACCGGGTTTTACAACTCCTCGTACGGAGAAATCCCTGACAAAGTTTACGCAATCGGATTCTGTAGAGGAGATCTCAAGCCCCCTGCCTGCGCTGCTTGTCTTGCCTCCACCGCCCTTATTGTCAAAAACGCTTGCCCTGATGCGAAGGATGGAGGTGTAGGCTCCATAAATTGCACGCTACGTTACTCCAACATCTCCATTAGTGGCATCAGAGTAGAAGCACCAGCTATATCTGGCTATAGCCAAGGTGACAATATCTCATCATCCTCAAGGTTTGATTTTAATCAAAGGCTCACCACATTATTTGAAACATTAAGAAGTAAAGCCGCCGCGGGTAGTGTTCTTAAATTTGCTGTTGGGCACTCAAACGCTCCGGTTAGTTCTGGTATAACGATATACGGACTTGCGCAGTGCAGTCCAGACTTATCGGAAACAGACTGCAGTGTTTGCATAAGTAAGGGTTTGGAGCAGCTCCCACCATGTTGTTATAAATCTTGGAGTTATGTTGGTGCCAGCTGTAGCTTAAGGTATGATCCTGACCTCTTCTACGACCCCGCAACTGATCCGACACCACTGCCTCCGCCATCACCACCGCCAGCCACTACCACAAGTAATTCTGGAGGTAAATTTACCTGCATATATGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

284

Amino Acids

30.17

Weight (kDa)

7.42

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	39 - 132	5.7e-19	Salt stress response/antifungal
Stress-antifung	PF01657	158 - 246	2.4e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc16I	TGCGCA	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	845
AccB1I	GGYRCC	2 cut(s)	137, 713
AccII	CGCG	1 cut(s)	536
AciI	CCGC	8 cut(s)	195, 315, 531, 534, 536, 759, 785, 797
AclWI	GGATC	2 cut(s)	731, 761
AcsI	RAATTY	2 cut(s)	551, 830
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	104, 133, 186, 512
AjiI	CACGTC	1 cut(s)	201
AluBI	AGCT	4 cut(s)	431, 676, 720, 726
AluI	AGCT	4 cut(s)	431, 676, 720, 726
AlwI	GGATC	2 cut(s)	731, 761
AoxI	GGCC	3 cut(s)	68, 81, 849
ApeKI	GCWGC	2 cut(s)	296, 673
ApoI	RAATTY	2 cut(s)	551, 830
AspLEI	GCGC	2 cut(s)	296, 613
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	6 cut(s)	43, 49, 98, 464, 490, 783
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	2 cut(s)	137, 713
BbvI	GCAGC	2 cut(s)	283, 685
BccI	CCATC	3 cut(s)	62, 347, 796
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	760, 794
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	208
BfmI	CTRYAG	4 cut(s)	265, 442, 643, 721
BfrI	CTTAAG	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	845
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	5 cut(s)	195, 297, 531, 534, 674
BlsI	GCNGC	5 cut(s)	196, 298, 532, 535, 675
Bme1390I	CCNGG	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	139, 367, 715
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	334, 420
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpmI	CTGGAG	1 cut(s)	843
BpuEI	CTTGAG	2 cut(s)	263, 457
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	448, 534
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	448, 534
BseGI	GGATG	2 cut(s)	358, 467
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseRI	GAGGAG	4 cut(s)	160, 167, 211, 285
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	283, 685
BsgI	GTGCAG	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	3 cut(s)	70, 83, 851
BshNI	GGYRCC	2 cut(s)	137, 713
BsiSI	CCGG	3 cut(s)	84, 207, 578
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	3 cut(s)	70, 83, 851
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	5 cut(s)	3, 45, 274, 736, 766
BspACI	CCGC	8 cut(s)	195, 315, 531, 534, 536, 759, 785, 797
BspANI	GGCC	3 cut(s)	70, 83, 851
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	3 cut(s)	139, 367, 715
BspMAI	CTGCAG	1 cut(s)	647
BspMI	ACCTGC	1 cut(s)	845
BspPI	GGATC	2 cut(s)	731, 761
BspT107I	GGYRCC	2 cut(s)	137, 713
BspTI	CTTAAG	1 cut(s)	727
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	448, 534
BssMI	GATC	5 cut(s)	3, 45, 274, 736, 766
BssT1I	CCWWGG	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	170, 187, 752
BstAFI	CTTAAG	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstC8I	GCNNGC	5 cut(s)	292, 337, 380, 718, 801
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	358, 467
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	296, 613
BstKTI	GATC	5 cut(s)	6, 48, 277, 739, 769
BstMBI	GATC	5 cut(s)	3, 45, 274, 736, 766
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 296, 305, 314, 651
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	4 cut(s)	265, 442, 643, 721
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	283, 685
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	70, 83, 851
BtgI	CCRYGG	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	358, 467
BtsI	GCAGTG	3 cut(s)	620, 652, 776
BtsIMutI	CAGTG	3 cut(s)	620, 652, 776
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	5 cut(s)	292, 337, 380, 718, 801
CfoI	GCGC	2 cut(s)	296, 613
Cfr10I	RCCGGY	1 cut(s)	83
Cfr42I	CCGCGG	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	43, 684
CviQI	GTAC	1 cut(s)	226
DpnI	GATC	5 cut(s)	5, 47, 276, 738, 768
DpnII	GATC	5 cut(s)	3, 45, 274, 736, 766
Eam1104I	CTCTTC	3 cut(s)	170, 187, 752
EarI	CTCTTC	3 cut(s)	170, 187, 752
EciI	GGCGGA	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	448
Eco147I	AGGCCT	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	46, 687
FatI	CATG	2 cut(s)	42, 683
FauI	CCCGC	2 cut(s)	529, 766
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	5 cut(s)	195, 297, 531, 534, 674
FokI	GGATG	2 cut(s)	365, 454
Fsp4HI	GCNGC	5 cut(s)	195, 297, 531, 534, 674
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	2 cut(s)	295, 612
GluI	GCNGC	5 cut(s)	195, 297, 531, 534, 674
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	3 cut(s)	70, 83, 851
HapII	CCGG	3 cut(s)	84, 207, 578
HhaI	GCGC	2 cut(s)	296, 613
Hin1II	CATG	2 cut(s)	46, 687
Hin6I	GCGC	2 cut(s)	294, 611
HinP1I	GCGC	2 cut(s)	294, 611
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	3 cut(s)	84, 207, 578
HphI	GGTGA	6 cut(s)	43, 49, 98, 464, 490, 783
Hpy166II	GTNNAC	2 cut(s)	204, 250
Hpy188I	TCNGA	4 cut(s)	260, 416, 634, 771
Hpy188III	TCNNGA	4 cut(s)	12, 623, 740, 822
Hpy8I	GTNNAC	2 cut(s)	204, 250
HpyAV	CCTTC	2 cut(s)	139, 343
HpyCH4IV	ACGT	2 cut(s)	200, 385
HpyCH4V	TGCA	5 cut(s)	378, 618, 645, 654, 840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 296, 305, 314, 651
HpySE526I	ACGT	2 cut(s)	200, 385
Hsp92II	CATG	2 cut(s)	46, 687
HspAI	GCGC	2 cut(s)	294, 611
Ksp22I	TGATCA	1 cut(s)	45
KspI	CCGCGG	1 cut(s)	537
Kzo9I	GATC	5 cut(s)	3, 45, 274, 736, 766
LmnI	GCTCC	4 cut(s)	371, 580, 670, 681
Lsp1109I	GCAGC	2 cut(s)	283, 685
LweI	GCATC	2 cut(s)	334, 420
MaeII	ACGT	2 cut(s)	200, 385
MaeIII	GTNAC	2 cut(s)	386, 452
MalI	GATC	5 cut(s)	5, 47, 276, 738, 768
MboI	GATC	5 cut(s)	3, 45, 274, 736, 766
MboII	GAAGA	3 cut(s)	157, 174, 739
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	4 cut(s)	373, 551, 817, 830
MmeI	TCCRAC	2 cut(s)	417, 794
MseI	TTAA	4 cut(s)	486, 518, 549, 728
MslI	CAYNNNNRTG	2 cut(s)	41, 845
MspA1I	CMGCKG	2 cut(s)	536, 720
MspCI	CTTAAG	1 cut(s)	727
MspI	CCGG	3 cut(s)	84, 207, 578
MspR9I	CCNGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	5 cut(s)	144, 296, 305, 314, 651
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	5 cut(s)	3, 45, 274, 736, 766
NlaIII	CATG	2 cut(s)	46, 687
NlaIV	GGNNCC	3 cut(s)	139, 367, 715
NmuCI	GTSAC	1 cut(s)	452
NsbI	TGCGCA	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	261
Pfl23II	CGTACG	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	196, 298, 532, 535, 675
PsiI	TTATAA	1 cut(s)	693
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	139, 367, 715
PstI	CTGCAG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	720
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	41, 845
SacII	CCGCGG	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	486, 518, 549, 728
SatI	GCNGC	5 cut(s)	195, 297, 531, 534, 674
Sau3AI	GATC	5 cut(s)	3, 45, 274, 736, 766
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	334, 420
SfcI	CTRYAG	4 cut(s)	265, 442, 643, 721
Sfr303I	CCGCGG	1 cut(s)	537
SgrBI	CCGCGG	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	41, 845
SmlI	CTYRAG	4 cut(s)	10, 278, 472, 727
SmoI	CTYRAG	4 cut(s)	10, 278, 472, 727
Sse9I	AATT	4 cut(s)	373, 551, 817, 830
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	8 cut(s)	195, 315, 531, 534, 536, 759, 785, 797
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	448
TaiI	ACGT	2 cut(s)	203, 388
TaqI	TCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	373, 551, 817, 830
TauI	GCSGC	3 cut(s)	197, 533, 536
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	4 cut(s)	486, 518, 549, 728
Tru9I	TTAA	4 cut(s)	486, 518, 549, 728
TscAI	CASTG	3 cut(s)	620, 652, 783
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	296, 673
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	2 cut(s)	243, 618
TspRI	CASTG	3 cut(s)	620, 652, 783
Vha464I	CTTAAG	1 cut(s)	727
XapI	RAATTY	2 cut(s)	551, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.