Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Reverse (-)

23146852 .. 23148080

Gene Structure 1229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29873.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTTTCCTCAAGATCTCGATTATTCCTTTCTCTCATTCCCTTGATCATCACGATCACCAATATCAGACCAACTCATCAAGACGGTGATGATTTTAGGTATGATGTCAACACTTGTCATTTAAGCTCCTTCAACGGCACCTTCGGCAAAAACCTCAATCATCTCTTCTCCTCCATGCTCTCTTCAAGCAAGGCCAACACCTCCACCGGCTTTTACAGCTCCTCCTACGGAGCATTCCCTGATAAAGCTTACGCAATCGGAATCTGTAGAGGAGATCTCAAGCCCCGTGCCTGCGCTGCTTGTCTCTCCGACTCCACTGCCACCATTCTCCACAGCGCTTGCCCTGATACCAAGGAGGGAGTTATAGGCTACATAAATTGCACGGTACGTTACTCCAACATCTCCATAAGTGGCATCAGAGTAGAAGCTCCAGCAATATGGGGCGGCAATAGCGAAAAAGACAAAGTTTCAACGTCCCTCGGGTTTGATTTTAATCAACGGCTCACCACGTTATTTGAAACATTAAGAAATAAAGCCGCCGCAGGTAGCAGTGTTCTTAAGTTTGCTGTTGGGCACTCGAACGCTCCGGTTAGTTCTGGTATAACCATATACGGACTTGCGCAGTGCAGTCCAGACCTATCAGAAGCAGACTGCGGTGTTTGCTTTAGCAAGGCTTTGGAGCAGCTACCTCCATGTTGTTTTAAATCTTGGTTTTATATTGGTGCAAGCTGTACCTTAGCGTATAAACCTTACCTCTTCTATGACCCCGCAACTGATCCGACGCCCCTGCCTCTGCCGTCCACTACCACGAGTAATTCAGGAGGAATTGAAAGTAGTACAGCTGGGACGGTCGACGTCAATACTATTGTGCCAATCGTTGTTTCTATGTTACTAATTGTATCTCTTTGTCTATCCAATGATTTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

310

Amino Acids

32.91

Weight (kDa)

6.5

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 133	1.9e-19	Salt stress response/antifungal
Stress-antifung	PF01657	162 - 249	1e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	858
Acc16I	TGCGCA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	5 cut(s)	444, 537, 540, 654, 768
AclWI	GGATC	1 cut(s)	770
AcyI	GRCGYC	2 cut(s)	782, 855
AfaI	GTAC	3 cut(s)	387, 733, 838
AfeI	AGCGCT	1 cut(s)	337
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	133, 186, 471, 518, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AluBI	AGCT	7 cut(s)	126, 219, 248, 428, 685, 729, 842
AluI	AGCT	7 cut(s)	126, 219, 248, 428, 685, 729, 842
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	479
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	296, 682
AspLEI	GCGC	3 cut(s)	296, 338, 622
AsuHPI	GGTGA	3 cut(s)	49, 98, 496
AvaI	CYCGRG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	808
BbvI	GCAGC	2 cut(s)	283, 694
BceAI	ACGGC	3 cut(s)	151, 515, 781
BcgI	CGANNNNNNTGC	4 cut(s)	299, 333, 769, 803
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	533
BglII	AGATCT	2 cut(s)	14, 274
BisI	GCNGC	5 cut(s)	297, 445, 537, 540, 683
BlsI	GCNGC	5 cut(s)	298, 446, 538, 541, 684
BmeT110I	CYCGRG	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	736
BpuEI	CTTGAG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	782, 855
BsaJI	CCNNGG	2 cut(s)	351, 478
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse118I	RCCGGY	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	351, 478
BseJI	GATNNNNATC	1 cut(s)	492
BseRI	GAGGAG	3 cut(s)	160, 211, 285
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	283, 694
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	646
Bsh1285I	CGRYCG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	207, 587
BslFI	GGGAC	2 cut(s)	460, 859
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	460, 859
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	14, 45, 54, 274, 775
BspACI	CCGC	5 cut(s)	444, 537, 540, 654, 768
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	557
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	351, 478
BssMI	GATC	5 cut(s)	14, 45, 54, 274, 775
BssNI	GRCGYC	2 cut(s)	782, 855
BssSI	CACGAG	1 cut(s)	808
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	808
Bst4CI	ACNGT	3 cut(s)	86, 385, 850
Bst6I	CTCTTC	3 cut(s)	170, 187, 761
BstACI	GRCGYC	2 cut(s)	782, 855
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	292, 340, 727
BstDEI	CTNAG	1 cut(s)	736
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	296, 338, 622
BstKTI	GATC	5 cut(s)	17, 48, 57, 277, 778
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	5 cut(s)	14, 45, 54, 274, 775
BstMCI	CGRYCG	1 cut(s)	852
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 216, 296, 450, 660
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	283, 694
BstX2I	RGATCY	2 cut(s)	14, 274
BstXI	CCANNNNNNTGG	2 cut(s)	438, 922
BstYI	RGATCY	2 cut(s)	14, 274
BsuRI	GGCC	1 cut(s)	194
BtsI	GCAGTG	3 cut(s)	315, 556, 629
BtsIMutI	CAGTG	3 cut(s)	315, 556, 629
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	292, 340, 727
CfoI	GCGC	3 cut(s)	296, 338, 622
Cfr10I	RCCGGY	1 cut(s)	206
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	386, 732, 837
CspCI	CAANNNNNGTGG	4 cut(s)	320, 355, 496, 531
CviAII	CATG	2 cut(s)	175, 693
CviQI	GTAC	3 cut(s)	386, 732, 837
DdeI	CTNAG	1 cut(s)	736
DpnI	GATC	5 cut(s)	16, 47, 56, 276, 777
DpnII	GATC	5 cut(s)	14, 45, 54, 274, 775
DraI	TTTAAA	1 cut(s)	703
Eam1104I	CTCTTC	3 cut(s)	170, 187, 761
EarI	CTCTTC	3 cut(s)	170, 187, 761
Eco130I	CCWWGG	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	178, 696
FaqI	GGGAC	2 cut(s)	460, 859
FatI	CATG	2 cut(s)	174, 692
FauI	CCCGC	1 cut(s)	775
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	5 cut(s)	297, 445, 537, 540, 683
Fsp4HI	GCNGC	5 cut(s)	297, 445, 537, 540, 683
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	3 cut(s)	295, 337, 621
GluI	GCNGC	5 cut(s)	297, 445, 537, 540, 683
GsaI	CCCAGC	1 cut(s)	846
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	207, 587
HgaI	GACGC	1 cut(s)	790
HhaI	GCGC	3 cut(s)	296, 338, 622
Hin1I	GRCGYC	2 cut(s)	782, 855
Hin1II	CATG	2 cut(s)	178, 696
Hin6I	GCGC	3 cut(s)	294, 336, 620
HinP1I	GCGC	3 cut(s)	294, 336, 620
HincII	GTYRAC	2 cut(s)	109, 853
HindII	GTYRAC	2 cut(s)	109, 853
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	261, 311
HpaII	CCGG	2 cut(s)	207, 587
HphI	GGTGA	3 cut(s)	49, 98, 496
Hpy166II	GTNNAC	3 cut(s)	109, 801, 853
Hpy188I	TCNGA	6 cut(s)	68, 260, 310, 419, 643, 780
Hpy188III	TCNNGA	6 cut(s)	12, 18, 52, 80, 632, 819
Hpy8I	GTNNAC	3 cut(s)	109, 801, 853
Hpy99I	CGWCG	2 cut(s)	784, 857
HpyAV	CCTTC	2 cut(s)	139, 151
HpyCH4III	ACNGT	3 cut(s)	86, 385, 850
HpyCH4IV	ACGT	4 cut(s)	388, 473, 509, 855
HpyCH4V	TGCA	3 cut(s)	381, 627, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 216, 296, 450, 660
HpyF3I	CTNAG	1 cut(s)	736
HpySE526I	ACGT	4 cut(s)	388, 473, 509, 855
Hsp92I	GRCGYC	2 cut(s)	782, 855
Hsp92II	CATG	2 cut(s)	178, 696
HspAI	GCGC	3 cut(s)	294, 336, 620
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	14, 45, 54, 274, 775
LmnI	GCTCC	6 cut(s)	131, 224, 230, 433, 589, 679
Lsp1109I	GCAGC	2 cut(s)	283, 694
LweI	GCATC	1 cut(s)	423
MaeII	ACGT	4 cut(s)	388, 473, 509, 855
MaeIII	GTNAC	2 cut(s)	389, 888
MalI	GATC	5 cut(s)	16, 47, 56, 276, 777
MboI	GATC	5 cut(s)	14, 45, 54, 274, 775
MboII	GAAGA	3 cut(s)	157, 174, 748
MflI	RGATCY	2 cut(s)	14, 274
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	4 cut(s)	376, 814, 825, 894
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	3 cut(s)	333, 420, 803
MseI	TTAA	5 cut(s)	122, 492, 524, 558, 702
MspA1I	CMGCKG	1 cut(s)	842
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	2 cut(s)	207, 587
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	144, 216, 296, 450, 660
NdeII	GATC	5 cut(s)	14, 45, 54, 274, 775
NlaIII	CATG	2 cut(s)	178, 696
NlaIV	GGNNCC	1 cut(s)	139
NsbI	TGCGCA	1 cut(s)	621
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	5 cut(s)	298, 446, 538, 541, 684
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	842
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	14, 274
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	3 cut(s)	387, 733, 838
RsaNI	GTAC	3 cut(s)	386, 732, 837
SalI	GTCGAC	1 cut(s)	851
SaqAI	TTAA	5 cut(s)	122, 492, 524, 558, 702
SatI	GCNGC	5 cut(s)	297, 445, 537, 540, 683
Sau3AI	GATC	5 cut(s)	14, 45, 54, 274, 775
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	265
SmlI	CTYRAG	3 cut(s)	10, 278, 557
SmoI	CTYRAG	3 cut(s)	10, 278, 557
Sse9I	AATT	4 cut(s)	376, 814, 825, 894
SsiI	CCGC	5 cut(s)	444, 537, 540, 654, 768
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	86, 385, 850
TaiI	ACGT	4 cut(s)	391, 476, 512, 858
TaqI	TCGA	3 cut(s)	19, 578, 852
TasI	AATT	4 cut(s)	376, 814, 825, 894
TatI	WGTACW	1 cut(s)	836
TauI	GCSGC	3 cut(s)	447, 539, 542
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	5 cut(s)	122, 492, 524, 558, 702
Tru9I	TTAA	5 cut(s)	122, 492, 524, 558, 702
TscAI	CASTG	3 cut(s)	322, 556, 629
TseI	GCWGC	2 cut(s)	296, 682
TspGWI	ACGGA	2 cut(s)	243, 627
TspRI	CASTG	3 cut(s)	322, 556, 629
Vha464I	CTTAAG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	852
ZraI	GACGTC	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.