Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007546.1

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Forward (+)

39815 .. 40714

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007546.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgatcatcatgatcaccaatatcaggcctactcatcaagccagtgagtattcatttagaagcaacatctgttctaaaagcaccttcaacggcaccttcggcaaaaacctcaataatctcttctcctccctcctctcttcaatcaacgccaccacgtccaccgggttttacaactcctcgtacggagaaatccctgacaaagtttacgcaatcggattctgtagaggagatctcaagccctctgcatgcgctgcttgtcttgccgcctccaccgcccttattgtcaaaaacgcttgccctgatgcgaagaatggaggtgtaggctccataaattgcacgctacgttactccaacatctccattagtggcatcagagtagaagcaccaactatatctggctacagccatggtgacaatgtctcatcatccttaaggtttgattttaatcaaaggctcaccacattatttgaaacattaagaagtaaagccgcggcgggtagtgttcttaaatttgctgttgggcactcaaacgctccagttagctctggtataacgatatacggacttgcgcagtgcagtccagacttatcggaaacagactgcagtgtttgcataagtaagggtttggagcagctcccaccatgttgttataaatcttggagttatgttggtgccagctggagcttaaggtatgattctgacctcttctacgaccccgcaactgatcccaaaccactgcctgccactacaccactgcctccgccatcacccccgccagccactacaccactgcctccgccatcaccaccgccagccactaacacaagtaattctggaggtaaatttacctgcatgtatgtggcctcatattatatttgtagtgaatgtattgaggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

299

Amino Acids

31.72

Weight (kDa)

7.87

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc16I	TGCGCA	1 cut(s)	570
Acc36I	ACCTGC	1 cut(s)	857
AccB1I	GGYRCC	2 cut(s)	92, 671
AccII	CGCG	1 cut(s)	491
AclWI	GGATC	1 cut(s)	719
AcsI	RAATTY	2 cut(s)	509, 842
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	2 cut(s)	430, 685
AgsI	TTSAA	3 cut(s)	88, 141, 470
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	4 cut(s)	543, 634, 678, 684
AluI	AGCT	4 cut(s)	543, 634, 678, 684
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	2 cut(s)	26, 861
ApeKI	GCWGC	2 cut(s)	251, 631
ApoI	RAATTY	2 cut(s)	509, 842
AspLEI	GCGC	2 cut(s)	251, 571
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	5 cut(s)	7, 422, 448, 759, 795
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	92, 671
BbvI	GCAGC	2 cut(s)	238, 643
BccI	CCATC	2 cut(s)	772, 808
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	2 cut(s)	3, 12
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	424
BfmI	CTRYAG	3 cut(s)	220, 400, 601
BfrI	CTTAAG	2 cut(s)	430, 685
BfuAI	ACCTGC	1 cut(s)	857
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
BlsI	GCNGC	5 cut(s)	253, 265, 490, 493, 633
Bme1390I	CCNGG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	156
BmiI	GGNNCC	3 cut(s)	94, 325, 673
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	292, 378
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	3 cut(s)	519, 700, 855
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	406, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	42, 536
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	406, 489
BseGI	GGATG	1 cut(s)	425
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	42, 536
BseRI	GAGGAG	4 cut(s)	115, 122, 166, 240
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	238, 643
BsgI	GTGCAG	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	28, 863
BshNI	GGYRCC	2 cut(s)	92, 671
BsiSI	CCGG	1 cut(s)	162
BsiWI	CGTACG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	28, 863
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	3, 12, 229, 724
Bsp19I	CCATGG	1 cut(s)	406
BspANI	GGCC	2 cut(s)	28, 863
BspFNI	CGCG	1 cut(s)	491
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	94, 325, 673
BspMAI	CTGCAG	1 cut(s)	605
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	1 cut(s)	719
BspT107I	GGYRCC	2 cut(s)	92, 671
BspTI	CTTAAG	2 cut(s)	430, 685
BsrI	ACTGG	2 cut(s)	42, 536
BssECI	CCNNGG	2 cut(s)	406, 489
BssMI	GATC	4 cut(s)	3, 12, 229, 724
BssT1I	CCWWGG	1 cut(s)	406
Bst6I	CTCTTC	3 cut(s)	125, 142, 710
BstAFI	CTTAAG	2 cut(s)	430, 685
BstAPI	GCANNNNNTGC	2 cut(s)	251, 609
BstC8I	GCNNGC	7 cut(s)	247, 295, 338, 676, 741, 777, 813
BstDSI	CCRYGG	2 cut(s)	406, 489
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	251, 571
BstKTI	GATC	4 cut(s)	6, 15, 232, 727
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	4 cut(s)	3, 12, 229, 724
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 251, 260, 272, 609
BstNSI	RCATGY	2 cut(s)	249, 856
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	3 cut(s)	220, 400, 601
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	238, 643
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	28, 863
BtgI	CCRYGG	2 cut(s)	406, 489
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	5 cut(s)	578, 610, 734, 752, 788
BtsIMutI	CAGTG	6 cut(s)	49, 578, 610, 734, 752, 788
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	7 cut(s)	247, 295, 338, 676, 741, 777, 813
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	2 cut(s)	251, 571
Cfr42I	CCGCGG	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	5 cut(s)	10, 246, 407, 642, 853
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	4 cut(s)	5, 14, 231, 726
DpnII	GATC	4 cut(s)	3, 12, 229, 724
Eam1104I	CTCTTC	3 cut(s)	125, 142, 710
EarI	CTCTTC	3 cut(s)	125, 142, 710
EciI	GGCGGA	2 cut(s)	750, 786
Eco130I	CCWWGG	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	5 cut(s)	13, 249, 410, 645, 856
FatI	CATG	5 cut(s)	9, 245, 406, 641, 852
FauI	CCCGC	3 cut(s)	487, 724, 780
FbaI	TGATCA	2 cut(s)	3, 12
Fnu4HI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	2 cut(s)	250, 570
GluI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
GsuI	CTGGAG	3 cut(s)	519, 700, 855
HaeIII	GGCC	2 cut(s)	28, 863
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	2 cut(s)	251, 571
Hin1II	CATG	5 cut(s)	13, 249, 410, 645, 856
Hin6I	GCGC	2 cut(s)	249, 569
HinP1I	GCGC	2 cut(s)	249, 569
HinfI	GANTC	2 cut(s)	216, 695
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	5 cut(s)	7, 422, 448, 759, 795
Hpy166II	GTNNAC	2 cut(s)	159, 205
Hpy188I	TCNGA	4 cut(s)	215, 374, 592, 700
Hpy188III	TCNNGA	3 cut(s)	10, 581, 834
Hpy8I	GTNNAC	2 cut(s)	159, 205
HpyAV	CCTTC	2 cut(s)	94, 106
HpyCH4IV	ACGT	2 cut(s)	155, 343
HpyCH4V	TGCA	6 cut(s)	245, 336, 576, 603, 612, 852
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 251, 260, 272, 609
HpySE526I	ACGT	2 cut(s)	155, 343
Hsp92II	CATG	5 cut(s)	13, 249, 410, 645, 856
HspAI	GCGC	2 cut(s)	249, 569
Ksp22I	TGATCA	2 cut(s)	3, 12
KspI	CCGCGG	1 cut(s)	492
Kzo9I	GATC	4 cut(s)	3, 12, 229, 724
LmnI	GCTCC	5 cut(s)	329, 538, 628, 639, 681
Lsp1109I	GCAGC	2 cut(s)	238, 643
LweI	GCATC	2 cut(s)	292, 378
MaeII	ACGT	2 cut(s)	155, 343
MaeIII	GTNAC	2 cut(s)	344, 410
MalI	GATC	4 cut(s)	5, 14, 231, 726
MboI	GATC	4 cut(s)	3, 12, 229, 724
MboII	GAAGA	4 cut(s)	112, 129, 319, 697
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	4 cut(s)	331, 509, 829, 842
MmeI	TCCRAC	1 cut(s)	375
MseI	TTAA	6 cut(s)	431, 444, 476, 507, 686, 898
MslI	CAYNNNNRTG	1 cut(s)	857
MspA1I	CMGCKG	2 cut(s)	491, 678
MspCI	CTTAAG	2 cut(s)	430, 685
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	99, 251, 260, 272, 609
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	3, 12, 229, 724
NlaIII	CATG	5 cut(s)	13, 249, 410, 645, 856
NlaIV	GGNNCC	3 cut(s)	94, 325, 673
NmuCI	GTSAC	1 cut(s)	410
NsbI	TGCGCA	1 cut(s)	570
NspI	RCATGY	2 cut(s)	249, 856
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	216, 695
Pfl23II	CGTACG	1 cut(s)	180
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	5 cut(s)	253, 265, 490, 493, 633
PsiI	TTATAA	1 cut(s)	651
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	94, 325, 673
PstI	CTGCAG	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	678
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	857
SacII	CCGCGG	1 cut(s)	492
SaqAI	TTAA	6 cut(s)	431, 444, 476, 507, 686, 898
SatI	GCNGC	5 cut(s)	252, 264, 489, 492, 632
Sau3AI	GATC	4 cut(s)	3, 12, 229, 724
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	292, 378
SfcI	CTRYAG	3 cut(s)	220, 400, 601
Sfr303I	CCGCGG	1 cut(s)	492
SgrBI	CCGCGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	3 cut(s)	233, 430, 685
SmoI	CTYRAG	3 cut(s)	233, 430, 685
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	331, 509, 829, 842
SseBI	AGGCCT	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	406
TaiI	ACGT	2 cut(s)	158, 346
TasI	AATT	4 cut(s)	331, 509, 829, 842
TauI	GCSGC	3 cut(s)	266, 491, 494
TfiI	GAWTC	2 cut(s)	216, 695
Tru1I	TTAA	6 cut(s)	431, 444, 476, 507, 686, 898
Tru9I	TTAA	6 cut(s)	431, 444, 476, 507, 686, 898
TscAI	CASTG	6 cut(s)	49, 578, 610, 741, 759, 795
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	251, 631
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	2 cut(s)	198, 576
TspRI	CASTG	6 cut(s)	49, 578, 610, 741, 759, 795
Tth111I	GACNNNGTC	1 cut(s)	416
Vha464I	CTTAAG	2 cut(s)	430, 685
XapI	RAATTY	2 cut(s)	509, 842
XceI	RCATGY	2 cut(s)	249, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.