Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000560.1

Orthogroup ID

OG0017249

Physical Location & Seq

Genomic Coordinates Forward (+)

107896 .. 109190

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000560.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgatcatcaccatcaccaatatcaggcctactcatcaggccggtgatgagtattcatttgaaagcaacatctgttctaaaagcaccttcaacggcaccttcggcaaaaacctcaatcatctcttctcctccctcctctcttcaatcaacgccaccacgtccaccgggttttacaactcctcgtacggagaaatccctgacaaagtttacgcaatcggattctgtagaggagatctcaagccccctgcctgcgctgcttgtcttgcctccaccgcccttattgtcaaaaacgcttgccctgatgcgaaggatggaggtgtaggctccataaattgcacgctacgttactccaacatctccattagtggcatcagagtagaagcaccagctatatctggctatagccaaggtgacaatatctcatcatcctcaaggtttgattttaatcaaaggctcaccacattatttgaaacattaagaagtaaagccgccgcgggtagtgttcttaaatttgctgttgggcactcaaacgctccggttagttctggtataacgatatacggacttgcgcagtgcagtccagacttatcggaaacagactgcagtgtttgcataagtaagggtttggagcagctcccaccatgttgttataaatcttggagttatgttggtgccagctgtagcttaaggtatgatcctgacctcttctacgaccccgcaactgatccaacaccactgcctccgccatcaccaccgccagccactaccacaagtaattctggaggaatcgaaagtggcagatctcgaatggtcatcactactcttgtgccagtcgtggtttccatgtttctaattgtatctcattctctatccaatgatctggtatactttttggttcagtttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

302

Amino Acids

32.09

Weight (kDa)

6.07

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica	Prupe.1G470700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286721
rosa_laevigata	RLG00000012548
rosa_multiflora	Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii	Rroxscaffold_7G00182070
rosa_samantha	Rh6CG298800 Rh6DG290800
rosa_wichuraiana	Rw6G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc16I	TGCGCA	1 cut(s)	570
AccB1I	GGYRCC	2 cut(s)	95, 671
AccI	GTMKAC	1 cut(s)	885
AccII	CGCG	1 cut(s)	494
AciI	CCGC	7 cut(s)	273, 489, 492, 494, 717, 743, 755
AclWI	GGATC	2 cut(s)	689, 719
AcsI	RAATTY	1 cut(s)	509
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	685
AgsI	TTSAA	4 cut(s)	62, 91, 144, 470
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	4 cut(s)	389, 634, 678, 684
AluI	AGCT	4 cut(s)	389, 634, 678, 684
AlwI	GGATC	2 cut(s)	689, 719
AoxI	GGCC	2 cut(s)	26, 39
ApeKI	GCWGC	2 cut(s)	254, 631
ApoI	RAATTY	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	254, 571
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	5 cut(s)	7, 56, 422, 448, 741
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	95, 671
BbvI	GCAGC	2 cut(s)	241, 643
BccI	CCATC	3 cut(s)	20, 305, 754
BceAI	ACGGC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	166
BfmI	CTRYAG	4 cut(s)	223, 400, 601, 679
BfrI	CTTAAG	1 cut(s)	685
BglII	AGATCT	2 cut(s)	232, 800
BisI	GCNGC	4 cut(s)	255, 489, 492, 632
BlsI	GCNGC	4 cut(s)	256, 490, 493, 633
Bme1390I	CCNGG	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	97, 325, 673
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	292, 378
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpmI	CTGGAG	1 cut(s)	801
BpuEI	CTTGAG	2 cut(s)	221, 415
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	406, 492
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	830
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	406, 492
BseGI	GGATG	2 cut(s)	316, 425
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	4 cut(s)	118, 125, 169, 243
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	241, 643
BsgI	GTGCAG	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	28, 41
BshNI	GGYRCC	2 cut(s)	95, 671
BsiSI	CCGG	3 cut(s)	42, 165, 536
BsiWI	CGTACG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	2 cut(s)	28, 41
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
BspACI	CCGC	7 cut(s)	273, 489, 492, 494, 717, 743, 755
BspANI	GGCC	2 cut(s)	28, 41
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	3 cut(s)	97, 325, 673
BspMAI	CTGCAG	1 cut(s)	605
BspPI	GGATC	2 cut(s)	689, 719
BspT107I	GGYRCC	2 cut(s)	95, 671
BspTI	CTTAAG	1 cut(s)	685
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	830
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	406, 492
BssMI	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
BssNAI	GTATAC	1 cut(s)	886
BssT1I	CCWWGG	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	886
Bst6I	CTCTTC	3 cut(s)	128, 145, 710
BstAFI	CTTAAG	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	609
BstC8I	GCNNGC	5 cut(s)	250, 295, 338, 676, 759
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	316, 425
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	254, 571
BstKTI	GATC	6 cut(s)	6, 235, 697, 727, 803, 880
BstMBI	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 254, 263, 272, 609
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	4 cut(s)	223, 400, 601, 679
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	241, 643
BstX2I	RGATCY	2 cut(s)	232, 800
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	2 cut(s)	232, 800
BstZ17I	GTATAC	1 cut(s)	886
BsuRI	GGCC	2 cut(s)	28, 41
BtgI	CCRYGG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	316, 425
BtsI	GCAGTG	3 cut(s)	578, 610, 734
BtsIMutI	CAGTG	3 cut(s)	578, 610, 734
Cac8I	GCNNGC	5 cut(s)	250, 295, 338, 676, 759
CfoI	GCGC	2 cut(s)	254, 571
Cfr10I	RCCGGY	1 cut(s)	41
Cfr42I	CCGCGG	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	2 cut(s)	642, 844
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	6 cut(s)	5, 234, 696, 726, 802, 879
DpnII	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
Eam1104I	CTCTTC	3 cut(s)	128, 145, 710
EarI	CTCTTC	3 cut(s)	128, 145, 710
EciI	GGCGGA	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	2 cut(s)	645, 847
FatI	CATG	2 cut(s)	641, 843
FauI	CCCGC	2 cut(s)	487, 724
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	4 cut(s)	255, 489, 492, 632
FokI	GGATG	2 cut(s)	323, 412
Fsp4HI	GCNGC	4 cut(s)	255, 489, 492, 632
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	2 cut(s)	253, 570
GluI	GCNGC	4 cut(s)	255, 489, 492, 632
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	28, 41
HapII	CCGG	3 cut(s)	42, 165, 536
HhaI	GCGC	2 cut(s)	254, 571
Hin1II	CATG	2 cut(s)	645, 847
Hin6I	GCGC	2 cut(s)	252, 569
HinP1I	GCGC	2 cut(s)	252, 569
HinfI	GANTC	2 cut(s)	219, 786
HpaII	CCGG	3 cut(s)	42, 165, 536
HphI	GGTGA	5 cut(s)	7, 56, 422, 448, 741
Hpy166II	GTNNAC	3 cut(s)	162, 208, 886
Hpy188I	TCNGA	3 cut(s)	218, 374, 592
Hpy188III	TCNNGA	4 cut(s)	581, 698, 780, 804
Hpy8I	GTNNAC	3 cut(s)	162, 208, 886
HpyAV	CCTTC	3 cut(s)	97, 109, 301
HpyCH4IV	ACGT	2 cut(s)	158, 343
HpyCH4V	TGCA	4 cut(s)	336, 576, 603, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 254, 263, 272, 609
HpySE526I	ACGT	2 cut(s)	158, 343
Hsp92II	CATG	2 cut(s)	645, 847
HspAI	GCGC	2 cut(s)	252, 569
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
LmnI	GCTCC	4 cut(s)	329, 538, 628, 639
Lsp1109I	GCAGC	2 cut(s)	241, 643
LweI	GCATC	2 cut(s)	292, 378
MaeII	ACGT	2 cut(s)	158, 343
MaeIII	GTNAC	2 cut(s)	344, 410
MalI	GATC	6 cut(s)	5, 234, 696, 726, 802, 879
MboI	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
MboII	GAAGA	3 cut(s)	115, 132, 697
MflI	RGATCY	2 cut(s)	232, 800
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	4 cut(s)	331, 509, 775, 852
MmeI	TCCRAC	2 cut(s)	375, 752
MseI	TTAA	4 cut(s)	444, 476, 507, 686
MspA1I	CMGCKG	2 cut(s)	494, 678
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	3 cut(s)	42, 165, 536
MspR9I	CCNGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	5 cut(s)	102, 254, 263, 272, 609
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
NlaIII	CATG	2 cut(s)	645, 847
NlaIV	GGNNCC	3 cut(s)	97, 325, 673
NmuCI	GTSAC	1 cut(s)	410
NsbI	TGCGCA	1 cut(s)	570
PceI	AGGCCT	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	219, 786
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	256, 490, 493, 633
PsiI	TTATAA	1 cut(s)	651
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	97, 325, 673
PstI	CTGCAG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	232, 800
PvuII	CAGCTG	1 cut(s)	678
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	444, 476, 507, 686
SatI	GCNGC	4 cut(s)	255, 489, 492, 632
Sau3AI	GATC	6 cut(s)	3, 232, 694, 724, 800, 877
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	292, 378
SfcI	CTRYAG	4 cut(s)	223, 400, 601, 679
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SmlI	CTYRAG	3 cut(s)	236, 430, 685
SmoI	CTYRAG	3 cut(s)	236, 430, 685
Sse9I	AATT	4 cut(s)	331, 509, 775, 852
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	7 cut(s)	273, 489, 492, 494, 717, 743, 755
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	406
TaiI	ACGT	2 cut(s)	161, 346
TaqI	TCGA	2 cut(s)	789, 805
TasI	AATT	4 cut(s)	331, 509, 775, 852
TauI	GCSGC	2 cut(s)	491, 494
TfiI	GAWTC	2 cut(s)	219, 786
Tru1I	TTAA	4 cut(s)	444, 476, 507, 686
Tru9I	TTAA	4 cut(s)	444, 476, 507, 686
TscAI	CASTG	3 cut(s)	578, 610, 741
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	254, 631
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	201, 576
TspRI	CASTG	3 cut(s)	578, 610, 741
Vha464I	CTTAAG	1 cut(s)	685
XapI	RAATTY	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.