Rh6CG298800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017249
Physical Location & Seq
Forward (+)
47980231 .. 47981359
1129 bp
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UTR
Exon/CDS
Intron
Rh6CG298800.1

Sequence Viewer

Length: 561 bp
ATGATCATCATGATCACCAATATCAGGCCTACTCATCAAGCCAGTGAGTATTCATTTAAAAGCAACATCTGTTCTAAAAGCACCTTCAACGGCACCTTCAGCAAAAACCTCAATAATCTCTTCTCCTCCCTCCTCTCTTCAATCAACGCCACCACGTCCACCGGGTTTTACAGCTCCTCGTACGGAGAAATCCCTGACAAAGTTTACGCAATCGGATTCTGTAGAGGAGATCTCAAGCCCTCTGCATGCGCTGCTTGTCTTGCCGCCTCCACCGCCCTGATTGTCAAAAACGCTTGCCCTGATGCGAAGAATGGAGGTGTAGGCTCCATAAATTGCACGCTACGTTACTCCAACATCTCCATTAGTGGCATCAGAGTAGAAGCACCATCTATATCTGGCTACAGCCATGGTGACAATGTCTCATCATCCTCAAGGTTTGATTTTAATCAAAGGCTCACCACATTATTTGAAACATTAAGAAGTAAAGCCGCGGCGGGTAGTGTTCTTAAATTTGCTGTTGGGCACTCAAACGCTCCGATGACACGAGTTCCAACTGAGTAA

Protein Analysis

186

Amino Acids

19.76

Weight (kDa)

9.24

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 24 - 118 3.5e-20 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017249)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29872 FvH4_2g29873 FvH4_2g29874 FvH4_2g29876
prunus_persica Prupe.1G470700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0286721
rosa_laevigata RLG00000012548
rosa_multiflora Rmu_sc0000560.1_g000019 Rmu_sc0007546.1_g000006
rosa_roxburghii Rroxscaffold_7G00182070
rosa_samantha Rh6CG298800 Rh6DG290800
rosa_wichuraiana Rw6G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 1 cut(s) 491
AciI CCGC 5 cut(s) 264, 273, 489, 491, 494
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 3 cut(s) 88, 141, 470
AjiI CACGTC 1 cut(s) 156
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 424
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 509
AspLEI GCGC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 7, 422, 448
BaeGI GKGCMC 1 cut(s) 525
BanI GGYRCC 1 cut(s) 92
BauI CACGAG 1 cut(s) 543
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 106
BclI TGATCA 2 cut(s) 3, 12
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 424
BfmI CTRYAG 2 cut(s) 220, 400
BglII AGATCT 1 cut(s) 229
BisI GCNGC 4 cut(s) 252, 264, 489, 492
BlsI GCNGC 4 cut(s) 253, 265, 490, 493
Bme1390I CCNGG 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 94, 325
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 2 cut(s) 292, 378
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpuEI CTTGAG 2 cut(s) 218, 415
BpuMI CCSGG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 406, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 406, 489
BseGI GGATG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 4 cut(s) 115, 122, 166, 240
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 162
BsiWI CGTACG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 424
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 3, 12, 229
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 5 cut(s) 264, 273, 489, 491, 494
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 547
BspFNI CGCG 1 cut(s) 491
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 94, 325
BspT107I GGYRCC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 406, 489
BssMI GATC 3 cut(s) 3, 12, 229
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 543
Bst6I CTCTTC 2 cut(s) 125, 142
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 247, 295, 338
BstDEI CTNAG 1 cut(s) 555
BstDSI CCRYGG 2 cut(s) 406, 489
BstF5I GGATG 1 cut(s) 425
BstFNI CGCG 1 cut(s) 491
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 3 cut(s) 6, 15, 232
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 3 cut(s) 3, 12, 229
BstMWI GCNNNNNNNGC 4 cut(s) 99, 251, 260, 272
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 2 cut(s) 220, 400
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 28
BtgI CCRYGG 2 cut(s) 406, 489
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 247, 295, 338
CciI TCATGA 1 cut(s) 9
CfoI GCGC 1 cut(s) 251
Cfr42I CCGCGG 1 cut(s) 492
Csp6I GTAC 1 cut(s) 181
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 3 cut(s) 10, 246, 407
CviJI RGCY 9 cut(s) 28, 41, 174, 238, 324, 399, 405, 454, 488
CviKI_1 RGCY 9 cut(s) 28, 41, 174, 238, 324, 399, 405, 454, 488
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 555
DpnI GATC 3 cut(s) 5, 14, 231
DpnII GATC 3 cut(s) 3, 12, 229
DraI TTTAAA 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 125, 142
EarI CTCTTC 2 cut(s) 125, 142
Eco130I CCWWGG 1 cut(s) 406
Eco147I AGGCCT 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 3 cut(s) 13, 249, 410
FaiI YATR 5 cut(s) 11, 247, 329, 392, 408
FatI CATG 3 cut(s) 9, 245, 406
FauI CCCGC 1 cut(s) 487
FbaI TGATCA 2 cut(s) 3, 12
Fnu4HI GCNGC 4 cut(s) 252, 264, 489, 492
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 4 cut(s) 252, 264, 489, 492
GlaI GCGC 1 cut(s) 250
GluI GCNGC 4 cut(s) 252, 264, 489, 492
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 251
Hin1II CATG 3 cut(s) 13, 249, 410
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 162
HphI GGTGA 3 cut(s) 7, 422, 448
Hpy166II GTNNAC 2 cut(s) 159, 205
Hpy188I TCNGA 3 cut(s) 215, 374, 537
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 159, 205
HpyAV CCTTC 2 cut(s) 94, 106
HpyCH4IV ACGT 2 cut(s) 155, 343
HpyCH4V TGCA 2 cut(s) 245, 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 251, 260, 272
HpyF3I CTNAG 1 cut(s) 555
HpySE526I ACGT 2 cut(s) 155, 343
Hsp92II CATG 3 cut(s) 13, 249, 410
HspAI GCGC 1 cut(s) 249
Ksp22I TGATCA 2 cut(s) 3, 12
KspI CCGCGG 1 cut(s) 492
Kzo9I GATC 3 cut(s) 3, 12, 229
LmnI GCTCC 3 cut(s) 179, 329, 538
LpnPI CCDG 7 cut(s) 10, 55, 175, 207, 290, 312, 381
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 292, 378
MaeII ACGT 2 cut(s) 155, 343
MaeIII GTNAC 2 cut(s) 344, 410
MalI GATC 3 cut(s) 5, 14, 231
MboI GATC 3 cut(s) 3, 12, 229
MboII GAAGA 3 cut(s) 112, 129, 319
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 2 cut(s) 331, 509
MmeI TCCRAC 1 cut(s) 375
MseI TTAA 4 cut(s) 57, 444, 476, 507
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 99, 251, 260, 272
NciI CCSGG 1 cut(s) 163
NcoI CCATGG 1 cut(s) 406
NdeII GATC 3 cut(s) 3, 12, 229
NlaIII CATG 3 cut(s) 13, 249, 410
NlaIV GGNNCC 2 cut(s) 94, 325
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 249
PaeI GCATGC 1 cut(s) 249
PagI TCATGA 1 cut(s) 9
PceI AGGCCT 1 cut(s) 28
PfeI GAWTC 1 cut(s) 216
Pfl23II CGTACG 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 4 cut(s) 253, 265, 490, 493
PspLI CGTACG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 94, 325
PsuI RGATCY 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 416
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacII CCGCGG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 57, 444, 476, 507
SatI GCNGC 4 cut(s) 252, 264, 489, 492
Sau3AI GATC 3 cut(s) 3, 12, 229
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 525
SetI ASST 8 cut(s) 86, 98, 111, 158, 176, 319, 346, 437
SfaNI GCATC 2 cut(s) 292, 378
SfcI CTRYAG 2 cut(s) 220, 400
Sfr303I CCGCGG 1 cut(s) 492
SgrBI CCGCGG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 233, 430
SmoI CTYRAG 2 cut(s) 233, 430
SphI GCATGC 1 cut(s) 249
Sse9I AATT 2 cut(s) 331, 509
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 5 cut(s) 264, 273, 489, 491, 494
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 406
TaiI ACGT 2 cut(s) 158, 346
TasI AATT 2 cut(s) 331, 509
TauI GCSGC 3 cut(s) 266, 491, 494
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 4 cut(s) 57, 444, 476, 507
Tru9I TTAA 4 cut(s) 57, 444, 476, 507
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 416
XapI RAATTY 1 cut(s) 509
XceI RCATGY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.