Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Forward (+)

23571521 .. 23579114

Gene Structure 7594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGGACTCTGCCGGCAAAGGAGAAGGTGTGTGACCAGCTGGATTTCAAAGAGCTTGTTATGAATGAAGGATATAGTGGAAGTGATCTTAAGGTCAGCACATTAGATTACATATTTGGTTGTCTAGTGGTTCAATGCATATTTAGGTCTGAATTAGAACTTGAATCGACTGTTTTAGAACTTTTCCCAACATCTGGCTATCCAAATGCTAGGGAGTTAATACAGGCAGAGAGTGAGAGACAAAAGGATTTTATGGGACTCATGGGAGTAAGTACTGTAAGCTCAGATAAGAAGGTTCTGATTTTCGAGGGGAAGACTGTGCAGAAGGTCGGAGCTTTCATCGGAAGATGGCCACAAAGGCAGCATGCCATACCTTTTGCGCTTCGGTATCTGGTATTGATCATGGATGCTGGGGACTTGAATCCGTCATCGTGCCAGAGGCACAAACGCCATAGCGAGGATCCCAGAGCCATGAGCACAGGAGATTATGTCGGAATAGCTACAGGCCTTATATCGACGAGGCTCGACTCGAATCCGTCGTCGTTCGAACCGGAGGCACAAACGCCGTACACCTCACACATTGCACATGCAAGACCGTTGGACCTCCTATCACTTTGGTTTGGAAACTTTTGGGCTTGTTTTGCAAATATCTTGAAGCTCATGTCGGCCTCTTTGGCGTTGATGGTCGAGGAAGAAGACCCCGAGGATACCTCCTATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017076 GO:0017111 GO:0019867 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

241

Amino Acids

26.87

Weight (kDa)

5.09

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AclWI	GGATC	2 cut(s)	455, 468
AcoI	YGGCCR	1 cut(s)	350
AfaI	GTAC	2 cut(s)	274, 569
AfiI	CCNNNNNNNGG	2 cut(s)	194, 457
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	5 cut(s)	49, 134, 164, 421, 655
AluBI	AGCT	6 cut(s)	40, 55, 282, 335, 500, 658
AluI	AGCT	6 cut(s)	40, 55, 282, 335, 500, 658
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	455, 468
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	3 cut(s)	350, 505, 666
ApeKI	GCWGC	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	601
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	320, 702
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	342, 676
BceAI	ACGGC	1 cut(s)	550
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	125, 210
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	700
BglI	GCCNNNNNGGC	2 cut(s)	358, 674
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	320, 702
BplI	GAGNNNNNCTC	1 cut(s)	695
Bpu14I	TTCGAA	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	702
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 457
Bse118I	RCCGGY	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	194, 457
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	352, 507, 668
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	14, 551
BslFI	GGGAC	2 cut(s)	270, 428
BslI	CCNNNNNNNGG	2 cut(s)	194, 457
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	270, 428
BsnI	GGCC	3 cut(s)	352, 507, 668
BsoBI	CYCGRG	1 cut(s)	701
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	85, 399, 460
BspANI	GGCC	3 cut(s)	352, 507, 668
BspCNI	CTCAG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	2 cut(s)	455, 468
BspT104I	TTCGAA	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	3 cut(s)	85, 399, 460
Bst4CI	ACNGT	4 cut(s)	172, 277, 319, 597
BstAFI	CTTAAG	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	15, 366
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	3 cut(s)	88, 402, 463
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	85, 399, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 641, 674
BstNSI	RCATGY	2 cut(s)	368, 590
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	2 cut(s)	320, 702
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	352, 507, 668
BtsCI	GGATG	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	15, 366
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	273, 568
CviAII	CATG	6 cut(s)	262, 365, 403, 472, 587, 661
CviQI	GTAC	2 cut(s)	273, 568
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	3 cut(s)	87, 401, 462
DpnII	GATC	3 cut(s)	85, 399, 460
EaeI	YGGCCR	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	140
FaeI	CATG	6 cut(s)	265, 368, 406, 475, 590, 664
FaqI	GGGAC	2 cut(s)	270, 428
FatI	CATG	6 cut(s)	261, 364, 402, 471, 586, 660
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	125, 210
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	352, 507, 668
HapII	CCGG	2 cut(s)	14, 551
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	6 cut(s)	265, 368, 406, 475, 590, 664
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	6 cut(s)	7, 164, 258, 421, 527, 532
HpaII	CCGG	2 cut(s)	14, 551
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	6 cut(s)	151, 286, 300, 332, 344, 494
Hpy188III	TCNNGA	1 cut(s)	652
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	3 cut(s)	520, 541, 544
HpyAV	CCTTC	4 cut(s)	19, 62, 286, 319
HpyCH4III	ACNGT	4 cut(s)	172, 277, 319, 597
HpyCH4V	TGCA	5 cut(s)	138, 322, 584, 590, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 641, 674
HpyF3I	CTNAG	1 cut(s)	283
Hsp92II	CATG	6 cut(s)	265, 368, 406, 475, 590, 664
HspAI	GCGC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	85, 399, 460
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	125, 210
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	87, 401, 462
MboI	GATC	3 cut(s)	85, 399, 460
MboII	GAAGA	4 cut(s)	325, 357, 704, 707
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	1 cut(s)	152
MluNI	TGGCCA	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	252, 521
MmeI	TCCRAC	3 cut(s)	310, 472, 579
Mox20I	TGGCCA	1 cut(s)	352
Mph1103I	ATGCAT	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	352
MseI	TTAA	2 cut(s)	90, 218
Msp20I	TGGCCA	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	40
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	2 cut(s)	14, 551
MwoI	GCNNNNNNNGC	3 cut(s)	358, 641, 674
NaeI	GCCGGC	1 cut(s)	15
NdeII	GATC	3 cut(s)	85, 399, 460
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	6 cut(s)	265, 368, 406, 475, 590, 664
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	2 cut(s)	368, 590
NspV	TTCGAA	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	164, 421, 532
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	2 cut(s)	252, 521
PpsI	GAGTC	2 cut(s)	252, 521
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	2 cut(s)	274, 569
RsaNI	GTAC	2 cut(s)	273, 568
SaqAI	TTAA	2 cut(s)	90, 218
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	3 cut(s)	85, 399, 460
Sau96I	GGNCC	1 cut(s)	601
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	2 cut(s)	252, 521
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	507
SspMI	CTAG	2 cut(s)	125, 210
StuI	AGGCCT	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	172, 277, 319, 597
TaqI	TCGA	7 cut(s)	167, 306, 515, 525, 530, 546, 687
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	164, 421, 532
Tru1I	TTAA	2 cut(s)	90, 218
Tru9I	TTAA	2 cut(s)	90, 218
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	77, 81, 328
TspGWI	ACGGA	2 cut(s)	414, 525
Van91I	CCANNNNNTGG	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	601
XceI	RCATGY	2 cut(s)	368, 590
XspI	CTAG	2 cut(s)	125, 210
ZrmI	AGTACT	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.