Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Forward (+)

9440988 .. 9441445

Gene Structure 458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16561.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGGACTCTGCCAGCAAAAGAGAAGGTGGATGACCAGCTAGATTTCAAAGAGCTTGTTATGAATGAAGGATATAGTGGAAGTGATCTTATGGTCAGCGCATTAGATTACATATTTGGTTGTCTAGTGGTTCAATGCATATTTAGGTCTGAATTAGAACTTGAATCGACTGTTTTAGAACTTTTCCCAACATCTGACTATCCGACTGTTAGGGAGGATCACTCGAATTATGTGAACTGCGTAAGGTACTCCCCAGATGGGAGTAAGTTTATTACTGTAAGCTCAGATAAGAAGGTTCTGATTTTCGAGGGGAAGACTGCGCAGACGGTCGGAGCTTTCAATCGAAGATGGCCACAAAGGCAGCATGTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

5.13

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	72 - 102	8e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	321
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	350
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	4 cut(s)	49, 134, 164, 340
AluBI	AGCT	4 cut(s)	40, 55, 282, 335
AluI	AGCT	4 cut(s)	40, 55, 282, 335
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	361
AspLEI	GCGC	2 cut(s)	101, 322
BalI	TGGCCA	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	320
BccI	CCATC	2 cut(s)	251, 342
BfaI	CTAG	2 cut(s)	41, 125
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	258
BsnI	GGCC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	85, 217
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	296
BspPI	GGATC	1 cut(s)	225
BssMI	GATC	2 cut(s)	85, 217
Bst4CI	ACNGT	4 cut(s)	172, 208, 277, 328
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	101, 322
BstKTI	GATC	2 cut(s)	88, 220
BstMBI	GATC	2 cut(s)	85, 217
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	2 cut(s)	101, 322
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	5 cut(s)	40, 55, 282, 335, 352
CviKI_1	RGCY	5 cut(s)	40, 55, 282, 335, 352
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	2 cut(s)	87, 219
DpnII	GATC	2 cut(s)	85, 217
EaeI	YGGCCR	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	140
FaeI	CATG	1 cut(s)	368
FaiI	YATR	7 cut(s)	62, 75, 92, 113, 140, 231, 366
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	41, 125
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	2 cut(s)	100, 321
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	101, 322
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	2 cut(s)	99, 320
HinP1I	GCGC	2 cut(s)	99, 320
HinfI	GANTC	2 cut(s)	7, 164
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	6 cut(s)	151, 196, 204, 286, 300, 332
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	19, 62, 286
HpyCH4III	ACNGT	4 cut(s)	172, 208, 277, 328
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	2 cut(s)	99, 320
Kzo9I	GATC	2 cut(s)	85, 217
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	3 cut(s)	27, 50, 267
MaeI	CTAG	2 cut(s)	41, 125
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	87, 219
MboI	GATC	2 cut(s)	85, 217
MboII	GAAGA	2 cut(s)	325, 357
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	2 cut(s)	152, 226
MluNI	TGGCCA	1 cut(s)	352
MmeI	TCCRAC	2 cut(s)	227, 310
MnlI	CCTC	2 cut(s)	208, 301
Mox20I	TGGCCA	1 cut(s)	352
Mph1103I	ATGCAT	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	352
Msp20I	TGGCCA	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	2 cut(s)	85, 217
NlaIII	CATG	1 cut(s)	368
NsbI	TGCGCA	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	363
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	85, 217
SetI	ASST	9 cut(s)	30, 42, 57, 149, 248, 284, 297, 337, 374
SgeI	CNNG	9 cut(s)	26, 49, 53, 68, 137, 173, 235, 266, 319
Sse9I	AATT	2 cut(s)	152, 226
SspMI	CTAG	2 cut(s)	41, 125
TaaI	ACNGT	4 cut(s)	172, 208, 277, 328
TaqI	TCGA	4 cut(s)	167, 224, 306, 343
TasI	AATT	2 cut(s)	152, 226
TfiI	GAWTC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	77, 81
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	2 cut(s)	41, 125
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.