Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014500.1

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Reverse (-)

14651 .. 16406

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014500.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtcgtcggcatcttctgccgctgcgtctcggccgggagaggatttgtctggaggcggccatttttgcttggctctagcctttgtctaccatctcaggttggtgtttggtgtggttaggaagagtgtgtgtgtgtgtgtgtcagttgcagatccgccgtcggtcgtgaaggaagggagatccaaacgcagtggtgggtttggcgggttctgtgtcccgatctgtgttggtggaggttctgaggggcggcataaggtggtttcgatggtagcagaggctggagagctcctggggttgggctgggttactggggtcgggcggggctgtcctgaattgggccctggccttgtcccaagggcctacccagttttgggcctggttgtgttggcccaggagaaggatcactcgaattttgtgaactctgtaaggtactctccagatgagagtaagtttatcactattttgactgtgtccgctgacaagtcggcgaaagtatgggatatatgtgaggatggtaatgggaaggtgaataaaacattgacatgtcctggatccggtggagtggatgacatgcttgttggtggcctatggcagaatgatcatatagttactgtttcacttggcattgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

210

Amino Acids

21.73

Weight (kDa)

6.51

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	7 cut(s)	21, 57, 155, 204, 247, 319, 474
AclWI	GGATC	5 cut(s)	146, 174, 408, 546, 559
AcoI	YGGCCR	2 cut(s)	32, 58
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	6 cut(s)	295, 335, 370, 371, 397, 554
AflIII	ACRYGT	1 cut(s)	542
AjnI	CCWGG	5 cut(s)	288, 340, 375, 390, 547
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	5 cut(s)	146, 174, 408, 546, 559
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	8 cut(s)	32, 58, 337, 343, 357, 373, 387, 583
ApaI	GGGCCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	5 cut(s)	337, 338, 357, 373, 388
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	551
BanII	GRGCYC	2 cut(s)	288, 341
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	3 cut(s)	99, 259, 506
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	5 cut(s)	290, 342, 377, 392, 549
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	4 cut(s)	21, 24, 58, 248
BlsI	GCNGC	4 cut(s)	22, 25, 59, 249
Bme1390I	CCNGG	6 cut(s)	36, 290, 342, 377, 392, 549
BmgT120I	GGNCC	5 cut(s)	337, 338, 357, 373, 388
BmiI	GGNNCC	2 cut(s)	339, 553
BmrFI	CCNGG	6 cut(s)	36, 290, 342, 377, 392, 549
BmrI	ACTGGG	2 cut(s)	318, 359
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	2 cut(s)	318, 359
BpmI	CTGGAG	3 cut(s)	72, 300, 420
BpuMI	CCSGG	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	289, 340, 353, 390
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	6 cut(s)	295, 335, 370, 371, 397, 554
Bse1I	ACTGG	2 cut(s)	313, 365
BseBI	CCWGG	5 cut(s)	290, 342, 377, 392, 549
BseDI	CCNNGG	4 cut(s)	289, 340, 353, 390
BseGI	GGATG	2 cut(s)	517, 571
BseLI	CCNNNNNNNGG	6 cut(s)	295, 335, 370, 371, 397, 554
BseMII	CTCAG	2 cut(s)	109, 231
BseNI	ACTGG	2 cut(s)	313, 365
BseSI	GKGCMC	1 cut(s)	341
BseX3I	CGGCCG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	300
Bsh1285I	CGRYCG	2 cut(s)	35, 165
BshFI	GGCC	8 cut(s)	34, 60, 339, 345, 359, 375, 389, 585
BsiEI	CGRYCG	2 cut(s)	35, 165
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	35, 555
BslFI	GGGAC	2 cut(s)	200, 335
BslI	CCNNNNNNNGG	6 cut(s)	295, 335, 370, 371, 397, 554
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	200, 335
BsnI	GGCC	8 cut(s)	34, 60, 339, 345, 359, 375, 389, 585
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	288, 341
Bsp143I	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
BspACI	CCGC	7 cut(s)	21, 57, 155, 204, 247, 319, 474
BspANI	GGCC	8 cut(s)	34, 60, 339, 345, 359, 375, 389, 585
BspCNI	CTCAG	2 cut(s)	108, 232
BspLI	GGNNCC	2 cut(s)	339, 553
BspPI	GGATC	5 cut(s)	146, 174, 408, 546, 559
BsrI	ACTGG	2 cut(s)	313, 365
BssECI	CCNNGG	4 cut(s)	289, 340, 353, 390
BssMI	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	5 cut(s)	290, 342, 377, 392, 549
Bst4CI	ACNGT	2 cut(s)	469, 613
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	95, 240
BstF5I	GGATG	2 cut(s)	517, 571
BstKTI	GATC	6 cut(s)	154, 182, 222, 403, 554, 601
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
BstMCI	CGRYCG	2 cut(s)	35, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 66
BstNI	CCWGG	5 cut(s)	290, 342, 377, 392, 549
BstNSI	RCATGY	2 cut(s)	546, 574
BstSCI	CCNGG	6 cut(s)	34, 288, 340, 375, 390, 547
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	3 cut(s)	151, 179, 551
BstYI	RGATCY	3 cut(s)	151, 179, 551
BstZI	CGGCCG	1 cut(s)	32
BsuRI	GGCC	8 cut(s)	34, 60, 339, 345, 359, 375, 389, 585
BtsCI	GGATG	2 cut(s)	517, 571
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	5 cut(s)	337, 338, 357, 373, 388
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	2 cut(s)	543, 571
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	95, 240
DpnI	GATC	6 cut(s)	153, 181, 221, 402, 553, 600
DpnII	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
EaeI	YGGCCR	2 cut(s)	32, 58
EagI	CGGCCG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	288, 341
Eco52I	CGGCCG	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	2 cut(s)	338, 357
EcoRII	CCWGG	5 cut(s)	288, 340, 375, 390, 547
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	288, 341
ErhI	CCWWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	546, 574
FaiI	YATR	9 cut(s)	252, 496, 503, 505, 544, 572, 589, 603, 605
FaqI	GGGAC	2 cut(s)	200, 335
FatI	CATG	2 cut(s)	542, 570
FauI	CCCGC	2 cut(s)	197, 312
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	21, 24, 58, 248
FokI	GGATG	2 cut(s)	524, 578
FriOI	GRGCYC	2 cut(s)	288, 341
Fsp4HI	GCNGC	4 cut(s)	21, 24, 58, 248
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	4 cut(s)	21, 24, 58, 248
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	3 cut(s)	72, 300, 420
HaeIII	GGCC	8 cut(s)	34, 60, 339, 345, 359, 375, 389, 585
HapII	CCGG	2 cut(s)	35, 555
HgaI	GACGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	546, 574
HpaII	CCGG	2 cut(s)	35, 555
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	2 cut(s)	88, 418
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	5 cut(s)	51, 166, 217, 329, 437
Hpy8I	GTNNAC	2 cut(s)	88, 418
Hpy99I	CGWCG	2 cut(s)	10, 163
HpyAV	CCTTC	4 cut(s)	163, 167, 391, 517
HpyCH4III	ACNGT	2 cut(s)	469, 613
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 66
HpyF3I	CTNAG	2 cut(s)	95, 240
Hsp92II	CATG	2 cut(s)	546, 574
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	304, 607
MalI	GATC	6 cut(s)	153, 181, 221, 402, 553, 600
MboI	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
MboII	GAAGA	2 cut(s)	6, 133
MflI	RGATCY	3 cut(s)	151, 179, 551
MhlI	GDGCHC	2 cut(s)	288, 341
MluCI	AATT	2 cut(s)	332, 409
MnlI	CCTC	6 cut(s)	34, 47, 227, 235, 268, 502
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	2 cut(s)	23, 476
MspI	CCGG	2 cut(s)	35, 555
MspR9I	CCNGG	6 cut(s)	36, 290, 342, 377, 392, 549
MvaI	CCWGG	5 cut(s)	290, 342, 377, 392, 549
MwoI	GCNNNNNNNGC	2 cut(s)	17, 66
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
NlaIII	CATG	2 cut(s)	546, 574
NlaIV	GGNNCC	2 cut(s)	339, 553
NmeAIII	GCCGAG	1 cut(s)	10
NspI	RCATGY	2 cut(s)	546, 574
PciI	ACATGT	1 cut(s)	542
PflFI	GACNNNGTC	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	22, 25, 59, 249
PscI	ACATGT	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	5 cut(s)	288, 340, 375, 390, 547
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	5 cut(s)	288, 340, 375, 390, 547
PspN4I	GGNNCC	2 cut(s)	339, 553
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	5 cut(s)	337, 338, 357, 373, 388
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	3 cut(s)	151, 179, 551
PsyI	GACNNNGTC	1 cut(s)	469
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	541
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	4 cut(s)	21, 24, 58, 248
Sau3AI	GATC	6 cut(s)	151, 179, 219, 400, 551, 598
Sau96I	GGNCC	5 cut(s)	337, 338, 357, 373, 388
ScrFI	CCNGG	6 cut(s)	36, 290, 342, 377, 392, 549
SduI	GDGCHC	2 cut(s)	288, 341
SetI	ASST	6 cut(s)	101, 238, 258, 288, 431, 528
SfaNI	GCATC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	541
Sse9I	AATT	2 cut(s)	332, 409
SsiI	CCGC	7 cut(s)	21, 57, 155, 204, 247, 319, 474
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	6 cut(s)	34, 288, 340, 375, 390, 547
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	469, 613
TaqI	TCGA	2 cut(s)	263, 407
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	2 cut(s)	332, 409
TauI	GCSGC	3 cut(s)	23, 60, 250
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	23
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	546, 574
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.