Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000472.1

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Forward (+)

66063 .. 66875

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000472.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgggcattcaaaacggggatcactcgaattttgtgaactctgtaaggtactctccagatgggagtaagtttatcactgtaagctcagataagaagggtcttattttttatgggaagactacggagaagattggagagctttcattggaagatggccacaaaggcagcatttatgctcttagctggagtccttatggcaaacaagtaacattggattggtttcttctggcaatagattttgttcttttgcattactggtcggcgaaagtatgggatatatgtgaggatggtaatgggaaggtgaataaaacattgacatgtcctggatccggtggagtggaagacatgcttgttggtggcctatggcagaatgatcatatagttactgtttcacttggcgttgatcaggaaaggggtgaggaagagcctccgcagacgagagaggagagtagggaacgattggcggtgtggttgggttggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

4.93

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	431, 464
AclWI	GGATC	3 cut(s)	27, 321, 334
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	4 cut(s)	84, 139, 183, 483
AluI	AGCT	4 cut(s)	84, 139, 183, 483
AlwI	GGATC	3 cut(s)	27, 321, 334
AoxI	GGCC	2 cut(s)	154, 358
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	313, 428
BalI	TGGCCA	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	326
BbsI	GAAGAC	2 cut(s)	122, 348
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	3 cut(s)	53, 146, 281
BciT130I	CCWGG	1 cut(s)	324
BclI	TGATCA	2 cut(s)	373, 403
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	324
BpiI	GAAGAC	2 cut(s)	122, 348
BpmI	CTGGAG	2 cut(s)	39, 205
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	177
BshFI	GGCC	2 cut(s)	156, 360
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	156, 360
Bsp143I	GATC	4 cut(s)	19, 326, 373, 403
BspACI	CCGC	2 cut(s)	431, 464
BspANI	GGCC	2 cut(s)	156, 360
BspCNI	CTCAG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	3 cut(s)	27, 321, 334
BspQI	GCTCTTC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	19, 326, 373, 403
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	79, 388
Bst6I	CTCTTC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	85, 179
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	4 cut(s)	22, 329, 376, 406
BstMBI	GATC	4 cut(s)	19, 326, 373, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	321, 349
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	2 cut(s)	122, 348
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	156, 360
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	318, 346
CviJI	RGCY	7 cut(s)	84, 139, 156, 183, 360, 427, 483
CviKI_1	RGCY	7 cut(s)	84, 139, 156, 183, 360, 427, 483
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	85, 179
DpnI	GATC	4 cut(s)	21, 328, 375, 405
DpnII	GATC	4 cut(s)	19, 326, 373, 403
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	321, 349
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	2 cut(s)	317, 345
FbaI	TGATCA	2 cut(s)	373, 403
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	2 cut(s)	39, 205
HaeIII	GGCC	2 cut(s)	156, 360
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	321, 349
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	313, 428
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	56, 407
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	88, 292
HpyCH4III	ACNGT	2 cut(s)	79, 388
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	85, 179
Hsp92II	CATG	2 cut(s)	321, 349
Ksp22I	TGATCA	2 cut(s)	373, 403
Kzo9I	GATC	4 cut(s)	19, 326, 373, 403
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	8 cut(s)	69, 169, 212, 241, 309, 336, 343, 392
Lsp1109I	GCAGC	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	205, 382
MalI	GATC	4 cut(s)	21, 328, 375, 405
MboI	GATC	4 cut(s)	19, 326, 373, 403
MboII	GAAGA	6 cut(s)	127, 139, 161, 215, 353, 434
MflI	RGATCY	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	1 cut(s)	28
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	277, 412, 436, 438
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	316
Msp20I	TGGCCA	1 cut(s)	156
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	4 cut(s)	19, 326, 373, 403
NlaIII	CATG	2 cut(s)	321, 349
NlaIV	GGNNCC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	321, 349
PciI	ACATGT	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	417
PctI	GAATGC	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PscI	ACATGT	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	316
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	4 cut(s)	19, 326, 373, 403
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	6 cut(s)	50, 86, 141, 185, 303, 485
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	431, 464
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	79, 388
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	28
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	2 cut(s)	321, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.