Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Reverse (-)

68491941 .. 68492491

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGGGACTTTGATGGGCATTCGAAACAGGTTTTGAGTTGTTGTTTTAAGCCAACAAGACCCTTTCGCATTGTCACATGCGGTGAGGATTTCCTGGTCAATTTCTATGAAGGGCCTCCTTTCAAATTCAAGCAGTCTCACAGGTACTCTCCAGATGGGAGTAAGTTTATCACTGTAAGCTCAGATAAGAAGGGTCTTATTTTTTATGGGAAGACTATGGAGAAGATCAGAGAGCTTTCATCGGAAGATGGCCACAAAGGCAGCATTTATGCTCTTAGCTGGAGTCCTTATGGCAAACAAGTAACATTTGATTGGTTTCTTCTGGCAATAGATTTTGTTCTTTTGCATTACTGGTTGTGTTACGAAATGTGTTCACGCTTGCTTCGTGTTGAATTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

133

Amino Acids

15.49

Weight (kDa)

8.19

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	124, 130, 392
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	180, 235, 279
AluI	AGCT	3 cut(s)	180, 235, 279
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	113, 250
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	3 cut(s)	8, 149, 242
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	135, 301
Bpu14I	TTCGAA	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	2 cut(s)	115, 252
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	115, 252
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	115, 252
BspCNI	CTCAG	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	181, 275
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	115, 252
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	6 cut(s)	52, 115, 180, 235, 252, 279
CviKI_1	RGCY	6 cut(s)	52, 115, 180, 235, 252, 279
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	181, 275
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	81
FaiI	YATR	7 cut(s)	79, 108, 207, 218, 270, 291, 397
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	262
GsuI	CTGGAG	2 cut(s)	135, 301
HaeIII	GGCC	2 cut(s)	115, 252
Hin1II	CATG	1 cut(s)	81
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	184, 230, 244
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	104, 184
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	181, 275
Hsp92II	CATG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	8 cut(s)	14, 80, 107, 127, 165, 265, 308, 337
Lsp1109I	GCAGC	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	73, 301, 359
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	4 cut(s)	223, 235, 257, 311
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	3 cut(s)	100, 125, 392
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	2 cut(s)	79, 126
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	5 cut(s)	33, 146, 182, 237, 281
SfuI	TTCGAA	1 cut(s)	23
Sse9I	AATT	3 cut(s)	100, 125, 392
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	100, 125, 392
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	123, 228
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.