Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Reverse (-)

76690922 .. 76693910

Gene Structure 2989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACGGCGTTGGCTTCGACGGTTAAGGAGGTGAGGACCGTCTATTGGGTGTCGGACTTGGAAGCATACTCACCGGAATCCGACGAAGCATCTACAACTCCATTTCTGAGGGACGTCGCTTTGCGATCTTGGTGGGATTCTGGGTCGACTGTCGGGGACTTTGATGGGCATTCGAAACGGGTTTTGAGCTGTTGTTTTAAGCCAACAAGACCCTTTCGCATTGTCACATGCGATGGGAGTAAGTTTATCACTGTAAGCTCAGATAAGAAGGGTCTTATTTTTGATGGGAAGACTGCGGAGAAGATCGGAGAGCTTTCATCGAAAGATGGCCACAAAGGCAGCATTTATGCTCTTAGCTGGAGTCCTGATGGAAAACAGATTTTGACTGTGTCCGCTGACAAGTCGGCGAAAGTATGGGATATATGTGAGGATGGTAATGGGAAGGAAAGGGGTGAGGAAGAGCCTCCGCAGACGAGAGAGGAGAGTAGGGATCGATTGGCGGTGAGGTTGGTTCGGGCTGAGATGGGCGCGTACCCAGTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

181

Amino Acids

20.02

Weight (kDa)

5.36

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	41 - 141	1.7e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	47 - 141	8.4e-07	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	51 - 142	1e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	77 - 142	1.5e-09	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	78 - 142	8.4e-07	WDR5 beta-propeller domain
EIF3I	PF24805	78 - 143	6.2e-07	EIF3I
WD40	PF00400	107 - 140	2.5e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	146, 540
AccII	CGCG	1 cut(s)	530
AciI	CCGC	4 cut(s)	296, 393, 467, 500
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	189, 258, 313, 357
AluI	AGCT	4 cut(s)	189, 258, 313, 357
AlwI	GGATC	1 cut(s)	498
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	4 cut(s)	43, 63, 464, 514
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	7 cut(s)	158, 227, 278, 320, 362, 425, 517
BceAI	ACGGC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	544
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	379
Bpu14I	TTCGAA	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	493
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	98, 273, 510
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	125, 170
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	125, 170
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	125, 303, 490
BspACI	CCGC	4 cut(s)	296, 393, 467, 500
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	3 cut(s)	99, 272, 511
BspDI	ATCGAT	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	530
BspPI	GGATC	1 cut(s)	498
BspQI	GCTCTTC	1 cut(s)	453
BspT104I	TTCGAA	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	536
BssMI	GATC	3 cut(s)	125, 303, 490
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	5 cut(s)	22, 40, 151, 253, 388
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	173
BstDEI	CTNAG	4 cut(s)	107, 259, 353, 519
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	3 cut(s)	128, 306, 493
BstMBI	GATC	3 cut(s)	125, 303, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	231
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	249
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	9 cut(s)	14, 189, 202, 258, 313, 330, 357, 463, 518
CviKI_1	RGCY	9 cut(s)	14, 189, 202, 258, 313, 330, 357, 463, 518
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	4 cut(s)	107, 259, 353, 519
DpnI	GATC	3 cut(s)	127, 305, 492
DpnII	GATC	3 cut(s)	125, 303, 490
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	36
FaeI	CATG	1 cut(s)	231
FaiI	YATR	6 cut(s)	67, 229, 348, 415, 422, 424
FaqI	GGGAC	2 cut(s)	125, 170
FatI	CATG	1 cut(s)	227
FblI	GTMKAC	2 cut(s)	146, 540
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	544
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	2 cut(s)	147, 541
HindII	GTYRAC	2 cut(s)	147, 541
HinfI	GANTC	3 cut(s)	77, 137, 361
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	4 cut(s)	43, 63, 464, 514
Hpy166II	GTNNAC	2 cut(s)	147, 541
Hpy188I	TCNGA	5 cut(s)	55, 82, 108, 262, 308
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	147, 541
Hpy99I	CGWCG	3 cut(s)	22, 86, 119
HpyAV	CCTTC	2 cut(s)	262, 436
HpyCH4III	ACNGT	5 cut(s)	22, 40, 151, 253, 388
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	4 cut(s)	107, 259, 353, 519
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	125, 303, 490
LguI	GCTCTTC	1 cut(s)	453
LpnPI	CCDG	4 cut(s)	87, 126, 343, 378
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	127, 305, 492
MboI	GATC	3 cut(s)	125, 303, 490
MboII	GAAGA	3 cut(s)	301, 313, 470
MlsI	TGGCCA	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	33, 105
MnlI	CCTC	8 cut(s)	22, 27, 102, 421, 448, 472, 474, 498
Mox20I	TGGCCA	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	2 cut(s)	24, 198
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	169
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	3 cut(s)	125, 303, 490
NlaIII	CATG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	77, 137
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SalI	GTCGAC	2 cut(s)	145, 539
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	24, 198
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	3 cut(s)	125, 303, 490
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	370
SetI	ASST	7 cut(s)	33, 117, 191, 260, 315, 359, 509
SfaNI	GCATC	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	1 cut(s)	36
SsiI	CCGC	4 cut(s)	296, 393, 467, 500
SspMI	CTAG	1 cut(s)	544
TaaI	ACNGT	5 cut(s)	22, 40, 151, 253, 388
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	6 cut(s)	17, 146, 173, 320, 493, 540
TfiI	GAWTC	2 cut(s)	77, 137
Tru1I	TTAA	2 cut(s)	24, 198
Tru9I	TTAA	2 cut(s)	24, 198
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	36
XceI	RCATGY	1 cut(s)	231
XmiI	GTMKAC	2 cut(s)	146, 540
XspI	CTAG	1 cut(s)	544
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.