Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017608

Physical Location & Seq

Genomic Coordinates Forward (+)

23196775 .. 23197312

Gene Structure 538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAAGGGCCTCCTTTCAAATTCAAGCAGTCTCACAGATGGGAGTAAGTTTATCACTGTAAGCTCAGATAAGAAGGGTCTTATTTTTGATGGGAAGACTGCGGAGAAGATCGGAGAGCTTTCATCGAAAGATGGCCACAAAGGCAGCATTTATGCTCTTAGCTGGAGTCCTGATGGCAAACAGATTTTGACTGTGTCCGCTGACAAGTCGGCGAAAGTATGGGATATATGTGAGGATGGTAATGGGAAGGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

85

Amino Acids

8.98

Weight (kDa)

7.82

Isoelectric Point (pI)

21.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Gbeta	PF25391	3 - 78	1.5e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	8 - 77	3.6e-07	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	11 - 77	4.5e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	13 - 77	1.3e-09	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	13 - 77	9.6e-08	WDR5 beta-propeller domain
EIF3I	PF24805	13 - 77	1.2e-07	EIF3I
Beta-prop_WDR3_1st	PF25173	13 - 77	7.5e-07	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	15 - 77	7.2e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	16 - 76	7.6e-06	WDR3 second beta-propeller domain
WD40	PF00400	42 - 75	5.7e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	44 - 78	2.5e-06	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30420 FvH4_5g16561
malus_domestica	MD09G1280700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0486521 RchiOBHm_Chr5g0062751 RchiOBHm_Chr6g0266701 RchiOBHm_Chr6g0295791
rosa_multiflora	Rmu_sc0014500.1_g000006 Rmu_ssc0000472.1_g000012
rosa_samantha	Rh5AG412300 Rh7DG018200
rosa_wichuraiana	Rw5G043730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 198
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	18, 24
AluBI	AGCT	3 cut(s)	63, 118, 162
AluI	AGCT	3 cut(s)	63, 118, 162
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	7, 133
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	5 cut(s)	32, 83, 125, 167, 230
BcoDI	GTCTC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	2 cut(s)	9, 135
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	9, 135
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	101, 198
BspANI	GGCC	2 cut(s)	9, 135
BspCNI	CTCAG	1 cut(s)	77
BssMI	GATC	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	58, 193
BstDEI	CTNAG	2 cut(s)	64, 158
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	9, 135
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	7
CviJI	RGCY	5 cut(s)	9, 63, 118, 135, 162
CviKI_1	RGCY	5 cut(s)	9, 63, 118, 135, 162
DdeI	CTNAG	2 cut(s)	64, 158
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	7
FaiI	YATR	4 cut(s)	153, 220, 227, 229
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	9, 135
HinfI	GANTC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	67, 113
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	67, 241
HpyCH4III	ACNGT	2 cut(s)	58, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	64, 158
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	2 cut(s)	148, 183
Lsp1109I	GCAGC	1 cut(s)	156
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	106, 118
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	2 cut(s)	19, 253
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	20, 226
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	256
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	1 cut(s)	108
PflFI	GACNNNGTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	256
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	175
SetI	ASST	4 cut(s)	65, 120, 164, 252
SgeI	CNNG	4 cut(s)	36, 175, 182, 217
Sse9I	AATT	2 cut(s)	19, 253
SsiI	CCGC	2 cut(s)	101, 198
TaaI	ACNGT	2 cut(s)	58, 193
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	19, 253
Tru1I	TTAA	1 cut(s)	256
Tru9I	TTAA	1 cut(s)	256
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	17, 111
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.