DDB1- and CUL4-associated factor homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31160 |
| fragaria_vesca | FvH4_2g30560 |
| malus_domestica | MD08G1132100.v1.1 MD15G1113300.v1.1 |
| prunus_persica | Prupe.1G463700_v2.0.a1 |
| pyrus_communis | pycom08g11060 pycom15g10160 |
| rosa_chinensis | RchiOBHm_Chr6g0312521 |
| rosa_laevigata | RLG00000010322 |
| rosa_multiflora | Rmu_sc0003094.1_g000015 Rmu_sc0035272.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00156780 |
| rosa_rugosa | Rorug06G0396000 |
| rosa_samantha | Rh6AG513400 Rh6BG526600 Rh6CG531500 Rh6DG515500 |
| rosa_wichuraiana | Rw6G044640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5081 |
| AarI | CACCTGC | 4 cut(s) | 1381, 3291, 3862, 4138 |
| AatII | GACGTC | 1 cut(s) | 674 |
| Acc36I | ACCTGC | 5 cut(s) | 811, 1381, 3291, 3862, 4138 |
| Acc65I | GGTACC | 1 cut(s) | 2635 |
| AccB1I | GGYRCC | 4 cut(s) | 55, 82, 2635, 3550 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 926, 3980 |
| AccI | GTMKAC | 2 cut(s) | 1737, 4060 |
| AccII | CGCG | 3 cut(s) | 53, 306, 4920 |
| AccIII | TCCGGA | 1 cut(s) | 5103 |
| AclI | AACGTT | 1 cut(s) | 3809 |
| AcoI | YGGCCR | 2 cut(s) | 162, 4490 |
| AcuI | CTGAAG | 9 cut(s) | 620, 1371, 1431, 3215, 3608, 3752, 3811, 4202, 4304 |
| AcyI | GRCGYC | 3 cut(s) | 56, 83, 671 |
| AfeI | AGCGCT | 2 cut(s) | 1585, 2579 |
| AflIII | ACRYGT | 2 cut(s) | 1740, 4351 |
| AjiI | CACGTC | 3 cut(s) | 1741, 3365, 4720 |
| AjnI | CCWGG | 8 cut(s) | 33, 414, 1123, 1281, 2001, 2010, 2559, 3461 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 548, 580, 3725, 3757, 4200, 4232, 4833, 4865 |
| AleI | CACNNNNGTG | 1 cut(s) | 2289 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1119, 1151 |
| Alw21I | GWGCWC | 4 cut(s) | 1990, 2048, 2320, 4701 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 425, 826, 1130, 4282 |
| Ama87I | CYCGRG | 3 cut(s) | 1679, 2741, 3959 |
| Aor13HI | TCCGGA | 1 cut(s) | 5103 |
| Aor51HI | AGCGCT | 2 cut(s) | 1585, 2579 |
| Asp718I | GGTACC | 1 cut(s) | 2635 |
| AspLEI | GCGC | 7 cut(s) | 58, 85, 218, 1038, 1586, 2580, 3414 |
| AsuC2I | CCSGG | 3 cut(s) | 781, 3028, 4405 |
| AsuII | TTCGAA | 1 cut(s) | 2227 |
| AsuNHI | GCTAGC | 2 cut(s) | 3368, 4907 |
| AvaI | CYCGRG | 3 cut(s) | 1679, 2741, 3959 |
| AvaII | GGWCC | 8 cut(s) | 333, 346, 1712, 2464, 2477, 2737, 4754, 5531 |
| AxyI | CCTNAGG | 1 cut(s) | 2215 |
| BaeGI | GKGCMC | 3 cut(s) | 1060, 3166, 3646 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2619, 2652 |
| BalI | TGGCCA | 1 cut(s) | 164 |
| BamHI | GGATCC | 1 cut(s) | 847 |
| BanI | GGYRCC | 4 cut(s) | 55, 82, 2635, 3550 |
| BanII | GRGCYC | 1 cut(s) | 2320 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1974, 2006 |
| BauI | CACGAG | 2 cut(s) | 975, 4416 |
| BbsI | GAAGAC | 6 cut(s) | 153, 489, 608, 3758, 3817, 4722 |
| Bbv12I | GWGCWC | 4 cut(s) | 1990, 2048, 2320, 4701 |
| BbvCI | CCTCAGC | 1 cut(s) | 2974 |
| BceAI | ACGGC | 2 cut(s) | 341, 5695 |
| BciT130I | CCWGG | 8 cut(s) | 35, 416, 1125, 1283, 2003, 2012, 2561, 3463 |
| BciVI | GTATCC | 1 cut(s) | 3898 |
| BclI | TGATCA | 2 cut(s) | 5023, 5367 |
| BcnI | CCSGG | 3 cut(s) | 781, 3028, 4405 |
| BfmI | CTRYAG | 9 cut(s) | 26, 1374, 1425, 1467, 1961, 2450, 2505, 2871, 3494 |
| BfoI | RGCGCY | 5 cut(s) | 59, 86, 219, 1587, 2581 |
| BfuAI | ACCTGC | 5 cut(s) | 811, 1381, 3291, 3862, 4138 |
| BfuI | GTATCC | 1 cut(s) | 3898 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1388 |
| BglII | AGATCT | 1 cut(s) | 2183 |
| BlpI | GCTNAGC | 1 cut(s) | 3291 |
| BmcAI | AGTACT | 5 cut(s) | 1203, 2151, 2253, 2309, 2884 |
| Bme18I | GGWCC | 8 cut(s) | 333, 346, 1712, 2464, 2477, 2737, 4754, 5531 |
| BmeT110I | CYCGRG | 3 cut(s) | 1679, 2741, 3959 |
| BmgBI | CACGTC | 3 cut(s) | 1741, 3365, 4720 |
| BmrI | ACTGGG | 5 cut(s) | 517, 2382, 3538, 5073, 5537 |
| BmtI | GCTAGC | 2 cut(s) | 3372, 4911 |
| BmuI | ACTGGG | 5 cut(s) | 517, 2382, 3538, 5073, 5537 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1743 |
| BpiI | GAAGAC | 6 cut(s) | 153, 489, 608, 3758, 3817, 4722 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4213, 4245 |
| BpmI | CTGGAG | 3 cut(s) | 909, 2208, 3065 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2130, 2420, 2974 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3291 |
| Bpu14I | TTCGAA | 1 cut(s) | 2227 |
| BpuEI | CTTGAG | 2 cut(s) | 1015, 5684 |
| BpuMI | CCSGG | 3 cut(s) | 781, 3028, 4405 |
| BsaAI | YACGTR | 1 cut(s) | 3161 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5451 |
| BsaHI | GRCGYC | 3 cut(s) | 56, 83, 671 |
| BsaI | GGTCTC | 2 cut(s) | 586, 4023 |
| BsaWI | WCCGGW | 5 cut(s) | 1845, 2466, 4651, 5103, 5308 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1683, 1713, 1725, 1755, 3038, 3068 |
| Bse118I | RCCGGY | 2 cut(s) | 79, 4834 |
| Bse21I | CCTNAGG | 1 cut(s) | 2215 |
| Bse3DI | GCAATG | 6 cut(s) | 304, 1803, 2431, 2968, 3402, 5295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5451 |
| BseAI | TCCGGA | 1 cut(s) | 5103 |
| BseBI | CCWGG | 8 cut(s) | 35, 416, 1125, 1283, 2003, 2012, 2561, 3463 |
| BseJI | GATNNNNATC | 1 cut(s) | 5451 |
| BseMI | GCAATG | 6 cut(s) | 304, 1803, 2431, 2968, 3402, 5295 |
| BseRI | GAGGAG | 9 cut(s) | 119, 143, 146, 906, 1018, 3126, 3701, 5108, 5664 |
| BseSI | GKGCMC | 3 cut(s) | 1060, 3166, 3646 |
| BseYI | CCCAGC | 5 cut(s) | 212, 638, 2909, 3786, 4076 |
| BsgI | GTGCAG | 3 cut(s) | 2391, 2603, 3834 |
| Bsh1236I | CGCG | 3 cut(s) | 53, 306, 4920 |
| BshNI | GGYRCC | 4 cut(s) | 55, 82, 2635, 3550 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1990, 2048, 2320, 4701 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1679, 2741, 3959 |
| BslFI | GGGAC | 8 cut(s) | 346, 359, 1886, 2215, 4321, 4344, 5003, 5651 |
| BsmBI | CGTCTC | 1 cut(s) | 69 |
| BsmFI | GGGAC | 8 cut(s) | 346, 359, 1886, 2215, 4321, 4344, 5003, 5651 |
| BsmI | GAATGC | 4 cut(s) | 1237, 1546, 4762, 5664 |
| Bso31I | GGTCTC | 2 cut(s) | 586, 4023 |
| BsoBI | CYCGRG | 3 cut(s) | 1679, 2741, 3959 |
| Bsp119I | TTCGAA | 1 cut(s) | 2227 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1060, 1990, 2048, 2320, 3166, 3646, 4701 |
| Bsp13I | TCCGGA | 1 cut(s) | 5103 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3291 |
| Bsp19I | CCATGG | 3 cut(s) | 12, 4493, 5755 |
| BspEI | TCCGGA | 1 cut(s) | 5103 |
| BspFNI | CGCG | 3 cut(s) | 53, 306, 4920 |
| BspMAI | CTGCAG | 6 cut(s) | 1378, 1429, 1471, 1965, 2454, 2509 |
| BspMI | ACCTGC | 5 cut(s) | 811, 1381, 3291, 3862, 4138 |
| BspOI | GCTAGC | 2 cut(s) | 3372, 4911 |
| BspQI | GCTCTTC | 1 cut(s) | 1995 |
| BspT104I | TTCGAA | 1 cut(s) | 2227 |
| BspT107I | GGYRCC | 4 cut(s) | 55, 82, 2635, 3550 |
| BspTNI | GGTCTC | 2 cut(s) | 586, 4023 |
| BsrDI | GCAATG | 6 cut(s) | 304, 1803, 2431, 2968, 3402, 5295 |
| BsrFI | RCCGGY | 2 cut(s) | 79, 4834 |
| BssAI | RCCGGY | 2 cut(s) | 79, 4834 |
| BssNI | GRCGYC | 3 cut(s) | 56, 83, 671 |
| BssSI | CACGAG | 2 cut(s) | 975, 4416 |
| BssT1I | CCWWGG | 7 cut(s) | 12, 165, 851, 3564, 4493, 5359, 5755 |
| Bst2BI | CACGAG | 2 cut(s) | 975, 4416 |
| Bst2UI | CCWGG | 8 cut(s) | 35, 416, 1125, 1283, 2003, 2012, 2561, 3463 |
| Bst6I | CTCTTC | 8 cut(s) | 111, 120, 787, 1995, 2349, 4329, 4708, 5682 |
| BstACI | GRCGYC | 3 cut(s) | 56, 83, 671 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 425, 1367 |
| BstBAI | YACGTR | 1 cut(s) | 3161 |
| BstBI | TTCGAA | 1 cut(s) | 2227 |
| BstDSI | CCRYGG | 8 cut(s) | 12, 51, 336, 1048, 4493, 4918, 5167, 5755 |
| BstEII | GGTNACC | 2 cut(s) | 2238, 4520 |
| BstFNI | CGCG | 3 cut(s) | 53, 306, 4920 |
| BstH2I | RGCGCY | 5 cut(s) | 59, 86, 219, 1587, 2581 |
| BstHHI | GCGC | 7 cut(s) | 58, 85, 218, 1038, 1586, 2580, 3414 |
| BstNI | CCWGG | 8 cut(s) | 35, 416, 1125, 1283, 2003, 2012, 2561, 3463 |
| BstNSI | RCATGY | 4 cut(s) | 1885, 2825, 4355, 4536 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1743 |
| BstPI | GGTNACC | 2 cut(s) | 2238, 4520 |
| BstSFI | CTRYAG | 9 cut(s) | 26, 1374, 1425, 1467, 1961, 2450, 2505, 2871, 3494 |
| BstSLI | GKGCMC | 3 cut(s) | 1060, 3166, 3646 |
| BstUI | CGCG | 3 cut(s) | 53, 306, 4920 |
| BstV2I | GAAGAC | 6 cut(s) | 153, 489, 608, 3758, 3817, 4722 |
| BstX2I | RGATCY | 4 cut(s) | 847, 1127, 2183, 5098 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 5063, 5762 |
| BstYI | RGATCY | 4 cut(s) | 847, 1127, 2183, 5098 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2215 |
| BsuI | GTATCC | 1 cut(s) | 3898 |
| BtgI | CCRYGG | 8 cut(s) | 12, 51, 336, 1048, 4493, 4918, 5167, 5755 |
| BtgZI | GCGATG | 2 cut(s) | 4280, 5748 |
| BtrI | CACGTC | 3 cut(s) | 1741, 3365, 4720 |
| BtsI | GCAGTG | 6 cut(s) | 973, 1099, 3527, 4398, 4554, 5734 |
| BveI | ACCTGC | 5 cut(s) | 811, 1381, 3291, 3862, 4138 |
| CaiI | CAGNNNCTG | 4 cut(s) | 425, 826, 1130, 4282 |
| CfoI | GCGC | 7 cut(s) | 58, 85, 218, 1038, 1586, 2580, 3414 |
| Cfr10I | RCCGGY | 2 cut(s) | 79, 4834 |
| Cfr42I | CCGCGG | 2 cut(s) | 54, 4921 |
| CseI | GACGC | 5 cut(s) | 873, 2126, 2291, 3597, 5285 |
| CsiI | ACCWGGT | 2 cut(s) | 2001, 2010 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 3284, 3319, 3608, 3643, 4192, 4227 |
| DinI | GGCGCC | 2 cut(s) | 57, 84 |
| DraI | TTTAAA | 1 cut(s) | 2163 |
| EaeI | YGGCCR | 2 cut(s) | 162, 4490 |
| Eam1104I | CTCTTC | 8 cut(s) | 111, 120, 787, 1995, 2349, 4329, 4708, 5682 |
| EarI | CTCTTC | 8 cut(s) | 111, 120, 787, 1995, 2349, 4329, 4708, 5682 |
| EciI | GGCGGA | 4 cut(s) | 57, 66, 125, 4513 |
| Ecl136II | GAGCTC | 1 cut(s) | 2318 |
| Eco130I | CCWWGG | 7 cut(s) | 12, 165, 851, 3564, 4493, 5359, 5755 |
| Eco24I | GRGCYC | 1 cut(s) | 2320 |
| Eco31I | GGTCTC | 2 cut(s) | 586, 4023 |
| Eco32I | GATATC | 4 cut(s) | 372, 3000, 4013, 4864 |
| Eco47I | GGWCC | 8 cut(s) | 333, 346, 1712, 2464, 2477, 2737, 4754, 5531 |
| Eco47III | AGCGCT | 2 cut(s) | 1585, 2579 |
| Eco53kI | GAGCTC | 1 cut(s) | 2318 |
| Eco57I | CTGAAG | 9 cut(s) | 620, 1371, 1431, 3215, 3608, 3752, 3811, 4202, 4304 |
| Eco81I | CCTNAGG | 1 cut(s) | 2215 |
| Eco88I | CYCGRG | 3 cut(s) | 1679, 2741, 3959 |
| Eco91I | GGTNACC | 2 cut(s) | 2238, 4520 |
| EcoICRI | GAGCTC | 1 cut(s) | 2318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5531 |
| EcoO65I | GGTNACC | 2 cut(s) | 2238, 4520 |
| EcoRI | GAATTC | 4 cut(s) | 1183, 1439, 1616, 2662 |
| EcoRII | CCWGG | 8 cut(s) | 33, 414, 1123, 1281, 2001, 2010, 2559, 3461 |
| EcoRV | GATATC | 4 cut(s) | 372, 3000, 4013, 4864 |
| EcoT14I | CCWWGG | 7 cut(s) | 12, 165, 851, 3564, 4493, 5359, 5755 |
| EcoT22I | ATGCAT | 4 cut(s) | 2608, 4538, 4738, 4764 |
| EcoT38I | GRGCYC | 1 cut(s) | 2320 |
| EgeI | GGCGCC | 2 cut(s) | 57, 84 |
| EheI | GGCGCC | 2 cut(s) | 57, 84 |
| ErhI | CCWWGG | 7 cut(s) | 12, 165, 851, 3564, 4493, 5359, 5755 |
| Esp3I | CGTCTC | 1 cut(s) | 69 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2386, 2418, 4836, 4868, 5116, 5148 |
| FaqI | GGGAC | 8 cut(s) | 346, 359, 1886, 2215, 4321, 4344, 5003, 5651 |
| FauI | CCCGC | 3 cut(s) | 3010, 4433, 4989 |
| FauNDI | CATATG | 2 cut(s) | 1826, 4768 |
| FbaI | TGATCA | 2 cut(s) | 5023, 5367 |
| FblI | GTMKAC | 2 cut(s) | 1737, 4060 |
| FriOI | GRGCYC | 1 cut(s) | 2320 |
| GlaI | GCGC | 7 cut(s) | 57, 84, 217, 1037, 1585, 2579, 3413 |
| GsaI | CCCAGC | 5 cut(s) | 216, 642, 2913, 3790, 4080 |
| GsuI | CTGGAG | 3 cut(s) | 909, 2208, 3065 |
| HaeII | RGCGCY | 5 cut(s) | 59, 86, 219, 1587, 2581 |
| HgaI | GACGC | 5 cut(s) | 873, 2126, 2291, 3597, 5285 |
| HhaI | GCGC | 7 cut(s) | 58, 85, 218, 1038, 1586, 2580, 3414 |
| Hin1I | GRCGYC | 3 cut(s) | 56, 83, 671 |
| Hin6I | GCGC | 7 cut(s) | 56, 83, 216, 1036, 1584, 2578, 3412 |
| HinP1I | GCGC | 7 cut(s) | 56, 83, 216, 1036, 1584, 2578, 3412 |
| HincII | GTYRAC | 4 cut(s) | 669, 1116, 4254, 5284 |
| HindII | GTYRAC | 4 cut(s) | 669, 1116, 4254, 5284 |
| HindIII | AAGCTT | 4 cut(s) | 1156, 2471, 3227, 3697 |
| HpaI | GTTAAC | 1 cut(s) | 5284 |
| Hpy99I | CGWCG | 6 cut(s) | 23, 5238, 5546, 5612, 5687, 5699 |
| HpyCH4IV | ACGT | 9 cut(s) | 486, 671, 1740, 3160, 3364, 3809, 4620, 4670, 4719 |
| HpySE526I | ACGT | 9 cut(s) | 486, 671, 1740, 3160, 3364, 3809, 4620, 4670, 4719 |
| Hsp92I | GRCGYC | 3 cut(s) | 56, 83, 671 |
| HspAI | GCGC | 7 cut(s) | 56, 83, 216, 1036, 1584, 2578, 3412 |
| KasI | GGCGCC | 2 cut(s) | 55, 82 |
| Kpn2I | TCCGGA | 1 cut(s) | 5103 |
| KpnI | GGTACC | 1 cut(s) | 2639 |
| KroI | GCCGGC | 2 cut(s) | 79, 4834 |
| KroNI | GCCGGC | 2 cut(s) | 81, 4836 |
| Ksp22I | TGATCA | 2 cut(s) | 5023, 5367 |
| KspAI | GTTAAC | 1 cut(s) | 5284 |
| KspI | CCGCGG | 2 cut(s) | 54, 4921 |
| LguI | GCTCTTC | 1 cut(s) | 1995 |
| LmnI | GCTCC | 9 cut(s) | 133, 1975, 2569, 2854, 3046, 3273, 3287, 3877, 5592 |
| MabI | ACCWGGT | 2 cut(s) | 2001, 2010 |
| MaeII | ACGT | 9 cut(s) | 486, 671, 1740, 3160, 3364, 3809, 4620, 4670, 4719 |
| MfeI | CAATTG | 3 cut(s) | 1521, 1950, 3207 |
| MflI | RGATCY | 4 cut(s) | 847, 1127, 2183, 5098 |
| MhlI | GDGCHC | 7 cut(s) | 1060, 1990, 2048, 2320, 3166, 3646, 4701 |
| MlsI | TGGCCA | 1 cut(s) | 164 |
| MluNI | TGGCCA | 1 cut(s) | 164 |
| Mly113I | GGCGCC | 2 cut(s) | 56, 83 |
| MlyI | GAGTC | 8 cut(s) | 734, 1019, 1678, 3186, 3791, 4249, 4256, 5109 |
| MmeI | TCCRAC | 7 cut(s) | 301, 1276, 2529, 2876, 3142, 3217, 4860 |
| Mox20I | TGGCCA | 1 cut(s) | 164 |
| Mph1103I | ATGCAT | 4 cut(s) | 2608, 4538, 4738, 4764 |
| MreI | CGCCGGCG | 1 cut(s) | 79 |
| MroI | TCCGGA | 1 cut(s) | 5103 |
| MroNI | GCCGGC | 2 cut(s) | 79, 4834 |
| MscI | TGGCCA | 1 cut(s) | 164 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1605, 2289, 4147, 4767 |
| Msp20I | TGGCCA | 1 cut(s) | 164 |
| MspA1I | CMGCKG | 6 cut(s) | 53, 422, 1111, 3437, 4904, 4920 |
| MunI | CAATTG | 3 cut(s) | 1521, 1950, 3207 |
| Mva1269I | GAATGC | 4 cut(s) | 1237, 1546, 4762, 5664 |
| MvaI | CCWGG | 8 cut(s) | 35, 416, 1125, 1283, 2003, 2012, 2561, 3463 |
| MvnI | CGCG | 3 cut(s) | 53, 306, 4920 |
| NaeI | GCCGGC | 2 cut(s) | 81, 4836 |
| NarI | GGCGCC | 2 cut(s) | 56, 83 |
| NciI | CCSGG | 3 cut(s) | 781, 3028, 4405 |
| NcoI | CCATGG | 3 cut(s) | 12, 4493, 5755 |
| NdeI | CATATG | 2 cut(s) | 1826, 4768 |
| NgoMIV | GCCGGC | 2 cut(s) | 79, 4834 |
| NheI | GCTAGC | 2 cut(s) | 3368, 4907 |
| NmeAIII | GCCGAG | 2 cut(s) | 162, 5491 |
| NmuCI | GTSAC | 6 cut(s) | 2238, 3349, 4396, 4550, 4654, 5558 |
| NsiI | ATGCAT | 4 cut(s) | 2608, 4538, 4738, 4764 |
| NspI | RCATGY | 4 cut(s) | 1885, 2825, 4355, 4536 |
| NspV | TTCGAA | 1 cut(s) | 2227 |
| OliI | CACNNNNGTG | 1 cut(s) | 2289 |
| PaeI | GCATGC | 1 cut(s) | 1885 |
| PaeR7I | CTCGAG | 1 cut(s) | 1679 |
| PaqCI | CACCTGC | 4 cut(s) | 1381, 3291, 3862, 4138 |
| PciI | ACATGT | 1 cut(s) | 4351 |
| PciSI | GCTCTTC | 1 cut(s) | 1995 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 4462, 5691 |
| PctI | GAATGC | 4 cut(s) | 1237, 1546, 4762, 5664 |
| PdiI | GCCGGC | 2 cut(s) | 81, 4836 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 926, 3980 |
| PfoI | TCCNGGA | 1 cut(s) | 1281 |
| PleI | GAGTC | 8 cut(s) | 733, 1019, 1678, 3185, 3791, 4249, 4256, 5109 |
| PluTI | GGCGCC | 2 cut(s) | 59, 86 |
| PpsI | GAGTC | 8 cut(s) | 733, 1019, 1678, 3185, 3791, 4249, 4256, 5109 |
| Ppu21I | YACGTR | 1 cut(s) | 3161 |
| PpuMI | RGGWCCY | 1 cut(s) | 5531 |
| PscI | ACATGT | 1 cut(s) | 4351 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1743 |
| PsiI | TTATAA | 1 cut(s) | 5081 |
| Psp124BI | GAGCTC | 1 cut(s) | 2320 |
| Psp1406I | AACGTT | 1 cut(s) | 3809 |
| Psp5II | RGGWCCY | 1 cut(s) | 5531 |
| Psp6I | CCWGG | 8 cut(s) | 33, 414, 1123, 1281, 2001, 2010, 2559, 3461 |
| PspEI | GGTNACC | 2 cut(s) | 2238, 4520 |
| PspFI | CCCAGC | 5 cut(s) | 212, 638, 2909, 3786, 4076 |
| PspGI | CCWGG | 8 cut(s) | 33, 414, 1123, 1281, 2001, 2010, 2559, 3461 |
| PspPPI | RGGWCCY | 1 cut(s) | 5531 |
| PstI | CTGCAG | 6 cut(s) | 1378, 1429, 1471, 1965, 2454, 2509 |
| PstNI | CAGNNNCTG | 4 cut(s) | 425, 826, 1130, 4282 |
| PsuI | RGATCY | 4 cut(s) | 847, 1127, 2183, 5098 |
| PvuII | CAGCTG | 4 cut(s) | 422, 1111, 3437, 4904 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1605, 2289, 4147, 4767 |
| SacI | GAGCTC | 1 cut(s) | 2320 |
| SacII | CCGCGG | 2 cut(s) | 54, 4921 |
| SapI | GCTCTTC | 1 cut(s) | 1995 |
| ScaI | AGTACT | 5 cut(s) | 1203, 2151, 2253, 2309, 2884 |
| SchI | GAGTC | 8 cut(s) | 734, 1019, 1678, 3186, 3791, 4249, 4256, 5109 |
| SduI | GDGCHC | 7 cut(s) | 1060, 1990, 2048, 2320, 3166, 3646, 4701 |
| SexAI | ACCWGGT | 2 cut(s) | 2001, 2010 |
| SfcI | CTRYAG | 9 cut(s) | 26, 1374, 1425, 1467, 1961, 2450, 2505, 2871, 3494 |
| SfoI | GGCGCC | 2 cut(s) | 57, 84 |
| Sfr274I | CTCGAG | 1 cut(s) | 1679 |
| Sfr303I | CCGCGG | 2 cut(s) | 54, 4921 |
| SfuI | TTCGAA | 1 cut(s) | 2227 |
| SgrAI | CRCCGGYG | 1 cut(s) | 79 |
| SgrBI | CCGCGG | 2 cut(s) | 54, 4921 |
| SinI | GGWCC | 8 cut(s) | 333, 346, 1712, 2464, 2477, 2737, 4754, 5531 |
| SlaI | CTCGAG | 1 cut(s) | 1679 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1605, 2289, 4147, 4767 |
| SmlI | CTYRAG | 3 cut(s) | 1030, 1679, 5663 |
| SmoI | CTYRAG | 3 cut(s) | 1030, 1679, 5663 |
| SphI | GCATGC | 1 cut(s) | 1885 |
| SspDI | GGCGCC | 2 cut(s) | 55, 82 |
| SspI | AATATT | 1 cut(s) | 4042 |
| SstI | GAGCTC | 1 cut(s) | 2320 |
| StyI | CCWWGG | 7 cut(s) | 12, 165, 851, 3564, 4493, 5359, 5755 |
| TaiI | ACGT | 9 cut(s) | 489, 674, 1743, 3163, 3367, 3812, 4623, 4673, 4722 |
| TaqII | GACCGA | 1 cut(s) | 4005 |
| TatI | WGTACW | 7 cut(s) | 1201, 2149, 2251, 2307, 2882, 3830, 5323 |
| TauI | GCSGC | 8 cut(s) | 11, 53, 56, 73, 3146, 3395, 3524, 4920 |
| TseFI | GTSAC | 6 cut(s) | 2238, 3349, 4396, 4550, 4654, 5558 |
| Tsp45I | GTSAC | 6 cut(s) | 2238, 3349, 4396, 4550, 4654, 5558 |
| TspGWI | ACGGA | 3 cut(s) | 400, 701, 5661 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 926, 3980 |
| VpaK11BI | GGWCC | 8 cut(s) | 333, 346, 1712, 2464, 2477, 2737, 4754, 5531 |
| XbaI | TCTAGA | 3 cut(s) | 1064, 1432, 2038 |
| XceI | RCATGY | 4 cut(s) | 1885, 2825, 4355, 4536 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3898 |
| XhoI | CTCGAG | 1 cut(s) | 1679 |
| XmiI | GTMKAC | 2 cut(s) | 1737, 4060 |
| ZraI | GACGTC | 1 cut(s) | 672 |
| ZrmI | AGTACT | 5 cut(s) | 1203, 2151, 2253, 2309, 2884 |
| Zsp2I | ATGCAT | 4 cut(s) | 2608, 4538, 4738, 4764 |