MD15G1113300.v1.1

DDB1- and CUL4-associated factor homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
7961520 .. 7970384
8865 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1113300.v1.1.491

Sequence Viewer

Length: 5775 bp
ATGGAGGCGGCCGTGGACGAGCAGCAGAACTTAGGGCAAGGCCAAGGGGAGGAAGGCGGAGCCGGGCCTCCAGCTCCGCCTCCACCGGTGGCAGCGCCAGAATCGCAATCTCAGGGAGGTGAGGAGGAAGAAGATGAGGAGGAAGAGGAGGAGGTTAAGAATGAATACGACGAATTGGCTGCCCAGGCTCACAAGCTTATGGACAAGGTCACTGCCGCGCCTGATAGCCCTAATCCTACTGTTCTTCACGCCCTCGCCTCACTTCTTGAAACCCAAGAATCTCGATACATGGAAGAGAATGGTCATTCATCCAGCAATGGTCGGACTTCACATAACATTGGACAGCTAGGGAACTTAGTCCGGGATCATGATGATTTCTTTGAATTAATATCTTCAAAGTACCTGTCAGATGCAAGATACTCCATTGCTGTGCAAGCAGCTGCTGGAAGGCTGCTTTTAACCTGTTCACTAACCTGGAGTTATCCTCATGTTTTTGAAGATGCTGTTTTGGAGAGAATAAAAGATTGGGTGATGGATGAGACTTCAATCTCATCGGTCGAATACCAGAATTGGAAGCATGATTTGGGGGGAAAGGAGGTCTCAGATTTTGAAATGCTGAAGACCTATTCTACTGGACTTCTTGCTGTATGTTTGGCTGGTGGCGGTTCAGTAGTAGAAGATGTGTTGACATCTGGGCTGTCAGCCAAACTTATGCGTTATCTTCGCATGCGTGTTTTGGGGGAGACGAGTATTTCTCAGAAGGATGTTACTCATTTAACAGAGAGCAAAAATATCTTGGGTGCTATTTGCATAAGAGGTAGAGATGAAGGTCGGGGTAGGGCTGGTCCACGGATAACAGATGAGAGATGTTTAGATGACCGGATTGTTGAAGGGGATCATGTCAGGAGTATCAGTAGGCAAACGTTTGGTGAAGAACAATGGGTTGATGGTGGAGAACCACCTGATGGATTGGCTGAAGACGTTGAGATCAATGCTGATGGAAAGATGAAATCTGGAGATCTTGATGAAAATGGGAGAGATGACTCCTCAAGGCGCAGACCCAACCGTGGATGGACAAGATCTAGAGGGAAGGGAAGGACCAATGAAGGACCTCTAGAGGATCAACAGCTCTTGACCTCTCCAGGATCTGGTAGTAGGTTGGGACATGGGAGGAGCCCTAGAGATAGGAGTTCGCTAAAAAATTCTGATGTGAAAAAAATACCAGACTCTAGGAAGTGTGCGGATGTTGTCCTTCTGGAAAGGGCGGATAGTGATGACTGTTTCCAGGACTGCAGAGTTGGATGTAAAGATATCTCTGATCTAGTTATGAAAGCAGTGAGATCTGCAGAAGCTGAAGCTAGAGCAGCCAATGCACCTGAAGAAGCAATCAAAGCTGCTGGTGATGCTGCTGCTGAAGTTGTCAAAAGTGCCTCTTTAGAGGAATTCAGAACTACAAATAATGAAGAAGCTGCAGTTTTGGCTGCTTCAAGAGCAGCGTCTACTGTCATTGATGCTGCTAATTCAGTTGAAGTTTCAAGGAGCTCTAGTGGCATCAATGCTGAATCAATGACTTCAAGCTGCACAGAACCAGAAAATCATGTAGATGCCGAGGAATACTTCATCCTGGATGCTGAGTCCCTTGCGCAGCTGAGAGAAAAATACTGTATTCAATGTCTAGAGACTCTAGGAGAATATGTCGAAGTTCTTGGACCTGTACTGCATGAAAAGGGGGTGGATGTATGTCTTGCACTGTTGCAACGAAATTCTAGACATAGAGAGCCGTCAAAAGTTGCGATGCTTTTGCCTGATGTAATGAAGCTCATCTGTGCTTTGGCTGCTCATCGTAAATTTGCTGCCTTGTTTGTGGATAGGGGTGGCATGCAGAAACTGCTTGCTGTTCCTAGGGTTGCTCAAACCTTCTTTGGTCTTTCTTCATGCCTATTTACCATCGGCTCTCTCCAGGGAATTATGGAGCGTGTTTGTGCTCTTCCTTCAGATGTGGTTTACCAGGTGGTTGAATTAGCTCTTCAACTTCTTGAGTGCTCACAGGATCAAGCCAGGAAAAATGCAGCCTTATTTTTTGCTGCTGCATTTGTTTTCAGGGCAGTTCTTGATGCTTTTGATGCTCAGGATGGATTACAGAAATTACTGGGCCTTTTAAATGATGCTGCATCTGTAAGATCTGGAGTAAATTCTGGGGCATTAGGGCTCCCTAGTTCAGGAACACTACGGAATGACAGGTCACCTGCAGAAGTACTGACTTCATCAGAGAAACAAATAGCTTACCATGCTTGTGTTGCTTTGCGCCAGTACTTCAGAGCACATCTTATTATGCTTGTGGATTCTATTCGTCCAAATAAGAACACTCGAAGTGCAGCTCGGAATCTTCCAAGTGTAAGGGCTGCTTACAAGCCACTTGACATCAGTAATGAAGCTATGGATGCAATATTTCTGCAGCTACAGAAGGACCGAAAGCTGGGTCCTGCATTTGTGAGAACTCGTTGGTCTGCAGTCGATAAGTTTTTGGGTTCTAATGGACATATTACCATGTTGGAGTTATGCCAGGCTCCACCCATTGAGCGTTATTTACATGATTTACTTCAATATGCATTGGGTGTTCTACATATTGTTACATTGGTCCCTAGCAGCCGCAAGTTGATCGTGAATTCTACATTAAGCAATAATCGTGTTGGTATAGCTGTCATTTTGGATGCAGCAAGTGTTGGTGGTAGCTATGTGGACCCTGAGATCATTCAACCGGCACTTAATGTGTTGGTCAATCTTGTCTGTCCTCCACCATCAATCAGTTATAAAGCACCTTTACTTGCACAAGGACAGCAGTCAGTTTCTGCCCAACCCTCTAGTGGTCCTTGTGGGGAATCAGCTGTAGCTGACCGAGGCAGTGCGGCAGCCCCTGGTACGCAGTCCAATAGTAGCAGCGCTCAAGCTCCTGCTGCCACTGCAACTTCAGGATTGGTGGGGGATCGCCGAATATCTTTAGGAGTTGGGGCAGGTTGTGCAGGCATGGCTGCACAATTAGAGCAAGGCTATCGCCAAGCAAGGGAGTCTGTTCGCGCCAACAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCACGCATATATTCTCCTCCTGCTGCACTGGACTGTCTCCGTGCACTTGCTTGCCGAGTCCTTCTTGGTTTAGCCAGAGATGATACTATTGCACATATATTGACAAAGCTCCAGGTTGGAAAGAAACTATCAGAACTAATTCGAGATTCAGGGAGCCAGACAAATGGAACTGAACAAGGCAGGTGGCAAGCTGAACTTTCACAGGCAGCTATTGAGCTCATTGCAATTGTGACAAATTCGGGACGAGCTAGCACATTGGCTGCCACTGATGCTGCTATGCCAACATTGAGGCGTTTAGAAAGGGCAGCTATAGCTGCTGCCACTCCTATCACTTACCATTCCAAGGAACTACTGCTGTTAATACATGAACACCTTCAAGCATCTGGGTTGGCCGCAACAGCTGCCTCTCTACTAAAAGAGGCTCAGTTGATGCCTTTGCCATCTTTGGCTGCCCCCTCATCTCTAGTTCAGCAAGCCACACAAGAAGCTCCTTCAGGGCAACTTCAGTGGCCCTCTGGTCGAACCCCTAGTGGGTTTCTTACAAACAAATCAAAGTTTACTGCAAATGATGAGGAAATAAGTTTCAAATTTGATTCTGCATTCTCGTATTCAAAGAAAAAACCTGTAGTGTTCTCTCCTAATTTAGGTCTACTGTCAAAGAATCAGTCTCAGTCTCATGACTCTCACCCCGCATCATCCAGGAAAGTTGTTAGTGCAGCAAAACAGTTATCTGCTTCTGCGAATGCATCAGAAACTCCATCAGTATCCCTGCCAAAACCTACTACTGATACAGAGTCCCATTGTAAGACACCCATCGTCTTGCCAATGAAACGAAAATTATCTGAGCTGAAGGATCCTGGGTGTTTGTTATCTTCTGGGAAACGCCTTCACACTGGTGACCATGGACTTCGCTCTCCCGTTTGTCTTACACCCACTACGGCGCGCAAGAGTGGCCTACTAACTGATACTGTTGGATTCTCTACCCCAACTGCCAACTTGAGAGATCAGTATGGTCGATCAACACCAGCTATTTTGCCATCAGAGTTTCCAGATGATAACCAGTATGGTAGTGGCCTTGCAACACCCTCCCAATTTGGGCTTCAGAGTGACCCTCAACCAAGCAACTCAGAGCGATTAACTCTAGACTCTGTGGTTGTTCAGTATTTGAAGCACCAGCATCGCCAGTGTCCTGCACCTATAACCACTCTTCCACCACTCTCTCTTTTACACCCACATGTTTGTCCTGAGCCAAAACGAAGCCTCGATGCCCCATCGAATGTAACAGCCCGGCTTGGTACACGTGAGTTCAGAAACATATATGGTGGGGTTCACGGTAATCGCAAGGATCGTCAGTTTGTTTACAGCAGATTCCGACCATGGCGAACTTGTCGGGATGATTCGGGTATCCCCTTGACATGCATCTCTTTTCTTAGTGATTCCTCTCATATCGCAGTAGGCAGCCATGGCGGTGAGCTCAAAATTTTTGACTCCAATAGCAGCAACGTACTGGAGAGTTGTGCAAGCCACCAGTGCCACCAGTCTCCTGTAACGCTTGTTCAGTCACGTCTTTCTGGTGAGACCGAACTTGTGCTTTCGTCAAGCTCCCAGGATGTGAGGTTGTGGGAGGCATCTTCAGTCTCTGCAGGGCCTATGCATTCCTTTGAAGGGTGCAAGGCTGCAAGATTTAGCAATTTCGGGGATATTTTTGCTGCTCTACCAACTGAGCCGGCTAGGAAAGAGATTCTCCTGTATGACATCCAAACTGGCCAGCTGGAATCGAAACTGTCTGATACATCTTCTAGCTCTACAGGTCGTGGACATGTTTATTCTCAAATACATTTCAACCCTTCAGACACAATGCTGCTTTGGAATGGGGTCCTGTGGGACAGGCGGGTTTCTACCCCTGTTCATCGTTTTGATCAGTTTACGGATTATGGGGGTGGTGGCTTCCATCCTGCTGGCAATGAGGTGATTATAAACTCCGAAGTCTGGGATCTCCGGAAATTTAGACTCCTCAGGAGTGTACCTTCATTAGACCAAACAACGATAACTTTCAATGCGCGTGGTGATGTAATTTATGCAATCCTCAGAAGAAATCTTGACGATATAATGTCAGCGGTTCACACCCGACGTGTAAAGCATCCACTCTTTGCTGCTTTCCGCACAGTGGATGCAGTTAACTACTTTGACATTGCCACAAGTCCAGTTGATCGTTGCGTCCTCGACTTCGCAACAGAACCAACTGATTCTTTTGTTGGGTTGATCACAATGGATGACCAAGATGAGATGTTTGCTTCTGCTAGAGTATATGAAATTGGTCGCAGAAGGCCGACCGATGATGATTCTGATCCCGACGACGCTGAGAGTGACGAAGAAGATGAGGATTCGGAAGACGACGACGATGTGGATTTGGACCCCATGCTGGGCCCGGATCTTGATGGGGATGATAGTGATATGGATGATATGAGCAATGACGATGATGATGATGGCGTGAGCGACGATGACGACGACGATGGAGATTTCATCATGGATGACTTTGAGGCTGGAGGTGGAATGCTGGAGATTGTAACGGACGGAGAGGAGGACGACGACGATAGTCAGGGGTTCGAATCGTACAGCAGTGGGGATGAAGATTTTGTGAGCAATGGTTTTGATGTTTGA

Protein Analysis

1925

Amino Acids

208.47

Weight (kDa)

5.01

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 1508 - 1656 1.6e-06 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 1509 - 1585 9.2e-06 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013230)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2811, 5090
AarI CACCTGC 2 cut(s) 2254, 3285
Acc16I TGCGCA 1 cut(s) 1644
Acc36I ACCTGC 3 cut(s) 2254, 3002, 3285
AccB7I CCANNNNNTGG 2 cut(s) 965, 1148
AccI GTMKAC 2 cut(s) 1499, 3763
AccII CGCG 4 cut(s) 218, 3075, 4057, 5176
AccIII TCCGGA 1 cut(s) 5112
AclI AACGTT 1 cut(s) 923
AcoI YGGCCR 3 cut(s) 9, 3504, 4879
AcvI CACGTG 1 cut(s) 4415
AfaI GTAC 9 cut(s) 401, 1716, 2256, 2312, 2920, 4411, 4620, 5139, 5729
AfeI AGCGCT 1 cut(s) 2941
AflIII ACRYGT 4 cut(s) 4348, 4412, 4933, 5245
AgeI ACCGGT 1 cut(s) 85
AjiI CACGTC 2 cut(s) 4679, 5246
AjuI GAANNNNNNNTTGG 6 cut(s) 508, 540, 566, 598, 4197, 4229
AleI CACNNNNGTG 1 cut(s) 4008
Alw21I GWGCWC 7 cut(s) 1544, 1987, 2045, 2323, 3160, 3333, 4590
Alw44I GTGCAC 1 cut(s) 3156
AlwNI CAGNNNCTG 7 cut(s) 443, 1148, 1352, 1888, 2849, 2915, 4754
Aor13HI TCCGGA 1 cut(s) 5112
Aor51HI AGCGCT 1 cut(s) 2941
ApaI GGGCCC 1 cut(s) 5543
ApaLI GTGCAC 1 cut(s) 3156
ArsI GACNNNNNNTTYG 6 cut(s) 389, 421, 2464, 2496, 3764, 3796
AseI ATTAAT 1 cut(s) 386
AsiGI ACCGGT 1 cut(s) 85
Asp700I GAANNNNTTC 2 cut(s) 3252, 3486
AspA2I CCTAGG 1 cut(s) 1901
AsuC2I CCSGG 4 cut(s) 64, 362, 4402, 5543
AsuII TTCGAA 1 cut(s) 5721
AsuNHI GCTAGC 1 cut(s) 3362
AvrII CCTAGG 1 cut(s) 1901
AxyI CCTNAGG 1 cut(s) 5129
BaeGI GKGCMC 2 cut(s) 3160, 5543
BalI TGGCCA 1 cut(s) 4881
BamHI GGATCC 1 cut(s) 3967
BanII GRGCYC 6 cut(s) 1178, 1544, 2211, 3333, 4590, 5543
BbrPI CACGTG 1 cut(s) 4415
BbsI GAAGAC 3 cut(s) 626, 984, 5511
Bbv12I GWGCWC 7 cut(s) 1544, 1987, 2045, 2323, 3160, 3333, 4590
BceAI ACGGC 2 cut(s) 1765, 4068
BciVI GTATCC 2 cut(s) 3889, 4529
BclI TGATCA 2 cut(s) 5032, 5376
BcnI CCSGG 4 cut(s) 64, 362, 4402, 5543
BfoI RGCGCY 2 cut(s) 98, 2943
BfuAI ACCTGC 3 cut(s) 2254, 3002, 3285
BfuI GTATCC 2 cut(s) 3889, 4529
BglII AGATCT 4 cut(s) 1018, 1079, 1340, 2180
BlnI CCTAGG 1 cut(s) 1901
BmcAI AGTACT 2 cut(s) 2256, 2312
BmgBI CACGTC 2 cut(s) 4679, 5246
BmrI ACTGGG 1 cut(s) 2159
BmtI GCTAGC 1 cut(s) 3366
BmuI ACTGGG 1 cut(s) 2159
BoxI GACNNNNGTC 2 cut(s) 2839, 5709
BpiI GAAGAC 3 cut(s) 626, 984, 5511
BplI GAGNNNNNCTC 6 cut(s) 469, 501, 739, 771, 4210, 4242
Bpu10I CCTNAGC 2 cut(s) 2127, 4359
Bpu14I TTCGAA 1 cut(s) 5721
BpuEI CTTGAG 4 cut(s) 1033, 2057, 2928, 4132
BpuMI CCSGG 4 cut(s) 64, 362, 4402, 5543
BsaAI YACGTR 1 cut(s) 4415
BsaBI GATNNNNATC 1 cut(s) 5460
BsaI GGTCTC 2 cut(s) 604, 4685
BsaWI WCCGGW 3 cut(s) 85, 879, 5112
BsaXI ACNNNNNCTCC 6 cut(s) 898, 928, 1531, 1561, 1680, 1710
Bse118I RCCGGY 3 cut(s) 85, 2758, 4840
Bse21I CCTNAGG 1 cut(s) 5129
Bse3DI GCAATG 7 cut(s) 322, 423, 3333, 5083, 5304, 5590, 5764
Bse8I GATNNNNATC 1 cut(s) 5460
BseAI TCCGGA 1 cut(s) 5112
BseJI GATNNNNATC 1 cut(s) 5460
BseMI GCAATG 7 cut(s) 322, 423, 3333, 5083, 5304, 5590, 5764
BsePI GCGCGC 1 cut(s) 4055
BseSI GKGCMC 2 cut(s) 3160, 5543
BseX3I CGGCCG 1 cut(s) 9
BseYI CCCAGC 2 cut(s) 2476, 5536
BsgI GTGCAG 7 cut(s) 1564, 2394, 3015, 3039, 3123, 3849, 4290
Bsh1236I CGCG 4 cut(s) 218, 3075, 4057, 5176
Bsh1285I CGRYCG 3 cut(s) 12, 558, 5448
BshTI ACCGGT 1 cut(s) 85
BsiEI CGRYCG 3 cut(s) 12, 558, 5448
BsiHKAI GWGCWC 7 cut(s) 1544, 1987, 2045, 2323, 3160, 3333, 4590
BsiSI CCGG 9 cut(s) 63, 86, 361, 880, 2759, 4402, 4841, 5113, 5543
BslFI GGGAC 6 cut(s) 1176, 1621, 2624, 3369, 3895, 5012
BsmBI CGTCTC 1 cut(s) 737
BsmFI GGGAC 6 cut(s) 1176, 1621, 2624, 3369, 3895, 5012
BsmI GAATGC 4 cut(s) 3713, 3862, 4768, 5673
Bso31I GGTCTC 2 cut(s) 604, 4685
Bsp119I TTCGAA 1 cut(s) 5721
Bsp120I GGGCCC 1 cut(s) 5539
Bsp13I TCCGGA 1 cut(s) 5112
Bsp19I CCATGG 3 cut(s) 4015, 4490, 4576
BspEI TCCGGA 1 cut(s) 5112
BspFNI CGCG 4 cut(s) 218, 3075, 4057, 5176
BspHI TCATGA 2 cut(s) 367, 3790
BspMAI CTGCAG 7 cut(s) 1295, 1348, 1474, 2251, 2457, 2512, 4759
BspMI ACCTGC 3 cut(s) 2254, 3002, 3285
BspOI GCTAGC 1 cut(s) 3366
BspQI GCTCTTC 2 cut(s) 1992, 2031
BspT104I TTCGAA 1 cut(s) 5721
BspTNI GGTCTC 2 cut(s) 604, 4685
BsrDI GCAATG 7 cut(s) 322, 423, 3333, 5083, 5304, 5590, 5764
BsrFI RCCGGY 3 cut(s) 85, 2758, 4840
BssAI RCCGGY 3 cut(s) 85, 2758, 4840
BssHII GCGCGC 1 cut(s) 4055
BssT1I CCWWGG 6 cut(s) 43, 1901, 3456, 4015, 4490, 4576
Bst6I CTCTTC 5 cut(s) 138, 288, 1992, 2031, 4326
BstAPI GCANNNNNTGC 4 cut(s) 1370, 1888, 3017, 3515
BstBAI YACGTR 1 cut(s) 4415
BstBI TTCGAA 1 cut(s) 5721
BstDSI CCRYGG 6 cut(s) 12, 848, 1066, 4015, 4490, 4576
BstEII GGTNACC 2 cut(s) 2241, 4010
BstENI CCTNNNNNAGG 2 cut(s) 2217, 3756
BstFNI CGCG 4 cut(s) 218, 3075, 4057, 5176
BstH2I RGCGCY 2 cut(s) 98, 2943
BstMCI CGRYCG 3 cut(s) 12, 558, 5448
BstNSI RCATGY 5 cut(s) 730, 1882, 4352, 4533, 4937
BstPAI GACNNNNGTC 2 cut(s) 2839, 5709
BstPI GGTNACC 2 cut(s) 2241, 4010
BstSLI GKGCMC 2 cut(s) 3160, 5543
BstUI CGCG 4 cut(s) 218, 3075, 4057, 5176
BstV2I GAAGAC 3 cut(s) 626, 984, 5511
BstX2I RGATCY 8 cut(s) 1018, 1079, 1145, 1340, 2180, 3967, 5107, 5545
BstXI CCANNNNNNTGG 2 cut(s) 3278, 5072
BstYI RGATCY 8 cut(s) 1018, 1079, 1145, 1340, 2180, 3967, 5107, 5545
BstZI CGGCCG 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 5129
BsuI GTATCC 2 cut(s) 3889, 4529
BtgI CCRYGG 6 cut(s) 12, 848, 1066, 4015, 4490, 4576
BtgZI GCGATG 2 cut(s) 1808, 4277
BtrI CACGTC 2 cut(s) 4679, 5246
BtsI GCAGTG 5 cut(s) 210, 1341, 2908, 2958, 5740
BveI ACCTGC 3 cut(s) 2254, 3002, 3285
CaiI CAGNNNCTG 7 cut(s) 443, 1148, 1352, 1888, 2849, 2915, 4754
CciI TCATGA 2 cut(s) 367, 3790
Cfr10I RCCGGY 3 cut(s) 85, 2758, 4840
CseI GACGC 3 cut(s) 1485, 5320, 5480
CsiI ACCWGGT 1 cut(s) 2007
Csp6I GTAC 9 cut(s) 400, 1715, 2255, 2311, 2919, 4410, 4619, 5138, 5728
CspAI ACCGGT 1 cut(s) 85
CspCI CAANNNNNGTGG 6 cut(s) 3278, 3313, 3602, 3637, 5158, 5193
CviQI GTAC 9 cut(s) 400, 1715, 2255, 2311, 2919, 4410, 4619, 5138, 5728
DraI TTTAAA 1 cut(s) 2160
EaeI YGGCCR 3 cut(s) 9, 3504, 4879
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 5 cut(s) 138, 288, 1992, 2031, 4326
EarI CTCTTC 5 cut(s) 138, 288, 1992, 2031, 4326
EciI GGCGGA 3 cut(s) 66, 72, 1280
Ecl136II GAGCTC 3 cut(s) 1542, 3331, 4588
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 6 cut(s) 43, 1901, 3456, 4015, 4490, 4576
Eco24I GRGCYC 6 cut(s) 1178, 1544, 2211, 3333, 4590, 5543
Eco31I GGTCTC 2 cut(s) 604, 4685
Eco32I GATATC 1 cut(s) 1312
Eco47III AGCGCT 1 cut(s) 2941
Eco52I CGGCCG 1 cut(s) 9
Eco53kI GAGCTC 3 cut(s) 1542, 3331, 4588
Eco72I CACGTG 1 cut(s) 4415
Eco81I CCTNAGG 1 cut(s) 5129
Eco91I GGTNACC 2 cut(s) 2241, 4010
EcoICRI GAGCTC 3 cut(s) 1542, 3331, 4588
EcoNI CCTNNNNNAGG 2 cut(s) 2217, 3756
EcoO109I RGGNCCY 4 cut(s) 1109, 2480, 4760, 4990
EcoO65I GGTNACC 2 cut(s) 2241, 4010
EcoRI GAATTC 2 cut(s) 1442, 2665
EcoRV GATATC 1 cut(s) 1312
EcoT14I CCWWGG 6 cut(s) 43, 1901, 3456, 4015, 4490, 4576
EcoT22I ATGCAT 4 cut(s) 2611, 3862, 4535, 4770
EcoT38I GRGCYC 6 cut(s) 1178, 1544, 2211, 3333, 4590, 5543
ErhI CCWWGG 6 cut(s) 43, 1901, 3456, 4015, 4490, 4576
Esp3I CGTCTC 1 cut(s) 737
FalI AAGNNNNNCTT 6 cut(s) 1417, 1449, 2389, 2421, 3294, 3326
FaqI GGGAC 6 cut(s) 1176, 1621, 2624, 3369, 3895, 5012
FauI CCCGC 2 cut(s) 3811, 4998
FbaI TGATCA 2 cut(s) 5032, 5376
FblI GTMKAC 2 cut(s) 1499, 3763
FriOI GRGCYC 6 cut(s) 1178, 1544, 2211, 3333, 4590, 5543
FspI TGCGCA 1 cut(s) 1644
GsaI CCCAGC 2 cut(s) 2480, 5540
HaeII RGCGCY 2 cut(s) 98, 2943
HapII CCGG 9 cut(s) 63, 86, 361, 880, 2759, 4402, 4841, 5113, 5543
HgaI GACGC 3 cut(s) 1485, 5320, 5480
HincII GTYRAC 2 cut(s) 687, 5293
HindII GTYRAC 2 cut(s) 687, 5293
HindIII AAGCTT 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 5293
HpaII CCGG 9 cut(s) 63, 86, 361, 880, 2759, 4402, 4841, 5113, 5543
HpyCH4IV ACGT 6 cut(s) 923, 981, 4414, 4617, 4678, 5245
HpySE526I ACGT 6 cut(s) 923, 981, 4414, 4617, 4678, 5245
Kpn2I TCCGGA 1 cut(s) 5112
KroI GCCGGC 1 cut(s) 4840
KroNI GCCGGC 1 cut(s) 4842
Ksp22I TGATCA 2 cut(s) 5032, 5376
KspAI GTTAAC 1 cut(s) 5293
LguI GCTCTTC 2 cut(s) 1992, 2031
MabI ACCWGGT 1 cut(s) 2007
MaeII ACGT 6 cut(s) 923, 981, 4414, 4617, 4678, 5245
MfeI CAATTG 1 cut(s) 3339
MflI RGATCY 8 cut(s) 1018, 1079, 1145, 1340, 2180, 3967, 5107, 5545
MlsI TGGCCA 1 cut(s) 4881
MluNI TGGCCA 1 cut(s) 4881
MmeI TCCRAC 7 cut(s) 302, 1279, 2532, 3136, 3211, 4066, 4510
Mox20I TGGCCA 1 cut(s) 4881
Mph1103I ATGCAT 4 cut(s) 2611, 3862, 4535, 4770
MroI TCCGGA 1 cut(s) 5112
MroNI GCCGGC 1 cut(s) 4840
MroXI GAANNNNTTC 2 cut(s) 3252, 3486
MscI TGGCCA 1 cut(s) 4881
MslI CAYNNNNRTG 6 cut(s) 428, 1602, 2292, 4008, 4347, 4581
Msp20I TGGCCA 1 cut(s) 4881
MspA1I CMGCKG 6 cut(s) 440, 1648, 2885, 3515, 4885, 5231
MspI CCGG 9 cut(s) 63, 86, 361, 880, 2759, 4402, 4841, 5113, 5543
MunI CAATTG 1 cut(s) 3339
Mva1269I GAATGC 4 cut(s) 3713, 3862, 4768, 5673
MvnI CGCG 4 cut(s) 218, 3075, 4057, 5176
NaeI GCCGGC 1 cut(s) 4842
NciI CCSGG 4 cut(s) 64, 362, 4402, 5543
NcoI CCATGG 3 cut(s) 4015, 4490, 4576
NgoMIV GCCGGC 1 cut(s) 4840
NheI GCTAGC 1 cut(s) 3362
NmeAIII GCCGAG 2 cut(s) 1633, 3194
NmuCI GTSAC 7 cut(s) 208, 2241, 3343, 4010, 4220, 4674, 5480
NsbI TGCGCA 1 cut(s) 1644
NsiI ATGCAT 4 cut(s) 2611, 3862, 4535, 4770
NspI RCATGY 5 cut(s) 730, 1882, 4352, 4533, 4937
NspV TTCGAA 1 cut(s) 5721
OliI CACNNNNGTG 1 cut(s) 4008
PaeI GCATGC 2 cut(s) 730, 1882
PagI TCATGA 2 cut(s) 367, 3790
PaqCI CACCTGC 2 cut(s) 2254, 3285
PauI GCGCGC 1 cut(s) 4055
PciI ACATGT 2 cut(s) 4348, 4933
PciSI GCTCTTC 2 cut(s) 1992, 2031
PcsI WCGNNNNNNNCGW 2 cut(s) 4459, 5619
PctI GAATGC 4 cut(s) 3713, 3862, 4768, 5673
PdiI GCCGGC 1 cut(s) 4842
PdmI GAANNNNTTC 2 cut(s) 3252, 3486
PflFI GACNNNGTC 1 cut(s) 206
PflMI CCANNNNNTGG 2 cut(s) 965, 1148
PfoI TCCNGGA 5 cut(s) 360, 1141, 1284, 1623, 3812
PinAI ACCGGT 1 cut(s) 85
PmaCI CACGTG 1 cut(s) 4415
PmlI CACGTG 1 cut(s) 4415
Ppu21I YACGTR 1 cut(s) 4415
PpuMI RGGWCCY 3 cut(s) 1109, 2480, 4990
PscI ACATGT 2 cut(s) 4348, 4933
PshAI GACNNNNGTC 2 cut(s) 2839, 5709
PshBI ATTAAT 1 cut(s) 386
PsiI TTATAA 2 cut(s) 2811, 5090
Psp124BI GAGCTC 3 cut(s) 1544, 3333, 4590
Psp1406I AACGTT 1 cut(s) 923
Psp5II RGGWCCY 3 cut(s) 1109, 2480, 4990
PspCI CACGTG 1 cut(s) 4415
PspEI GGTNACC 2 cut(s) 2241, 4010
PspFI CCCAGC 2 cut(s) 2476, 5536
PspOMI GGGCCC 1 cut(s) 5539
PspPPI RGGWCCY 3 cut(s) 1109, 2480, 4990
PsrI GAACNNNNNNTAC 2 cut(s) 4653, 4685
PstI CTGCAG 7 cut(s) 1295, 1348, 1474, 2251, 2457, 2512, 4759
PstNI CAGNNNCTG 7 cut(s) 443, 1148, 1352, 1888, 2849, 2915, 4754
PsuI RGATCY 8 cut(s) 1018, 1079, 1145, 1340, 2180, 3967, 5107, 5545
PsyI GACNNNGTC 1 cut(s) 206
PteI GCGCGC 1 cut(s) 4055
PvuII CAGCTG 5 cut(s) 440, 1648, 2885, 3515, 4885
RsaI GTAC 9 cut(s) 401, 1716, 2256, 2312, 2920, 4411, 4620, 5139, 5729
RsaNI GTAC 9 cut(s) 400, 1715, 2255, 2311, 2919, 4410, 4619, 5138, 5728
RseI CAYNNNNRTG 6 cut(s) 428, 1602, 2292, 4008, 4347, 4581
SacI GAGCTC 3 cut(s) 1544, 3333, 4590
SapI GCTCTTC 2 cut(s) 1992, 2031
ScaI AGTACT 2 cut(s) 2256, 2312
SexAI ACCWGGT 1 cut(s) 2007
SfuI TTCGAA 1 cut(s) 5721
SgrAI CRCCGGYG 1 cut(s) 85
SmiMI CAYNNNNRTG 6 cut(s) 428, 1602, 2292, 4008, 4347, 4581
SmlI CTYRAG 4 cut(s) 1048, 2036, 2943, 4111
SmoI CTYRAG 4 cut(s) 1048, 2036, 2943, 4111
SphI GCATGC 2 cut(s) 730, 1882
SspI AATATT 1 cut(s) 2448
SstI GAGCTC 3 cut(s) 1544, 3333, 4590
StyI CCWWGG 6 cut(s) 43, 1901, 3456, 4015, 4490, 4576
TaiI ACGT 6 cut(s) 926, 984, 4417, 4620, 4681, 5248
TaqII GACCGA 5 cut(s) 544, 2484, 2910, 4709, 5462
TatI WGTACW 3 cut(s) 1714, 2254, 2310
TauI GCSGC 5 cut(s) 11, 218, 2652, 2909, 3509
TseFI GTSAC 7 cut(s) 208, 2241, 3343, 4010, 4220, 4674, 5480
Tsp45I GTSAC 7 cut(s) 208, 2241, 3343, 4010, 4220, 4674, 5480
TspGWI ACGGA 6 cut(s) 865, 2245, 3143, 5057, 5699, 5703
Tth111I GACNNNGTC 1 cut(s) 206
Van91I CCANNNNNTGG 2 cut(s) 965, 1148
VneI GTGCAC 1 cut(s) 3156
VspI ATTAAT 1 cut(s) 386
XagI CCTNNNNNAGG 2 cut(s) 2217, 3756
XbaI TCTAGA 5 cut(s) 1082, 1114, 1675, 1766, 4255
XceI RCATGY 5 cut(s) 730, 1882, 4352, 4533, 4937
XcmI CCANNNNNNNNNTGG 2 cut(s) 2861, 4181
XmaJI CCTAGG 1 cut(s) 1901
XmiI GTMKAC 2 cut(s) 1499, 3763
XmnI GAANNNNTTC 2 cut(s) 3252, 3486
ZrmI AGTACT 2 cut(s) 2256, 2312
Zsp2I ATGCAT 4 cut(s) 2611, 3862, 4535, 4770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.