DDB1- and CUL4-associated factor homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31160 |
| fragaria_vesca | FvH4_2g30560 |
| malus_domestica | MD08G1132100.v1.1 MD15G1113300.v1.1 |
| prunus_persica | Prupe.1G463700_v2.0.a1 |
| pyrus_communis | pycom08g11060 pycom15g10160 |
| rosa_chinensis | RchiOBHm_Chr6g0312521 |
| rosa_laevigata | RLG00000010322 |
| rosa_multiflora | Rmu_sc0003094.1_g000015 Rmu_sc0035272.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00156780 |
| rosa_rugosa | Rorug06G0396000 |
| rosa_samantha | Rh6AG513400 Rh6BG526600 Rh6CG531500 Rh6DG515500 |
| rosa_wichuraiana | Rw6G044640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5114 |
| AarI | CACCTGC | 4 cut(s) | 1426, 2296, 3318, 4237 |
| Acc36I | ACCTGC | 6 cut(s) | 1426, 2296, 2435, 3044, 3318, 4237 |
| Acc65I | GGTACC | 1 cut(s) | 4550 |
| AccB1I | GGYRCC | 2 cut(s) | 103, 4550 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1190, 2261 |
| AccI | GTMKAC | 4 cut(s) | 1541, 2046, 3790, 5458 |
| AccII | CGCG | 4 cut(s) | 227, 1110, 4447, 5271 |
| AccIII | TCCGGA | 1 cut(s) | 5136 |
| AclI | AACGTT | 1 cut(s) | 962 |
| AcoI | YGGCCR | 3 cut(s) | 9, 1521, 3537 |
| AcyI | GRCGYC | 3 cut(s) | 68, 104, 3944 |
| AfaI | GTAC | 9 cut(s) | 1624, 1758, 2151, 2298, 2354, 2956, 4552, 4653, 5163 |
| AflIII | ACRYGT | 4 cut(s) | 4445, 4957, 5269, 5424 |
| AjiI | CACGTC | 1 cut(s) | 5548 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 517, 549, 575, 607, 4230, 4262 |
| AleI | CACNNNNGTG | 2 cut(s) | 2334, 4029 |
| Alw21I | GWGCWC | 6 cut(s) | 1586, 2029, 2087, 2365, 3193, 4623 |
| Alw44I | GTGCAC | 1 cut(s) | 3189 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 452, 1190, 1394, 2951, 4778 |
| Ama87I | CYCGRG | 3 cut(s) | 62, 356, 805 |
| Aor13HI | TCCGGA | 1 cut(s) | 5136 |
| ApaI | GGGCCC | 1 cut(s) | 5567 |
| ApaLI | GTGCAC | 1 cut(s) | 3189 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 398, 430, 2506, 2538, 3791, 3823, 4484, 4516 |
| AseI | ATTAAT | 2 cut(s) | 395, 3506 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3285, 3519 |
| Asp718I | GGTACC | 1 cut(s) | 4550 |
| AspA2I | CCTAGG | 1 cut(s) | 1943 |
| AspLEI | GCGC | 6 cut(s) | 106, 229, 1098, 2978, 3441, 4742 |
| AsuC2I | CCSGG | 5 cut(s) | 63, 64, 371, 4435, 5567 |
| AsuNHI | GCTAGC | 1 cut(s) | 3395 |
| AvaI | CYCGRG | 3 cut(s) | 62, 356, 805 |
| AvaII | GGWCC | 9 cut(s) | 360, 1140, 1751, 2509, 2522, 2680, 2903, 4492, 5551 |
| AvrII | CCTAGG | 1 cut(s) | 1943 |
| BaeGI | GKGCMC | 3 cut(s) | 2245, 3193, 5567 |
| BamHI | GGATCC | 1 cut(s) | 3988 |
| BanI | GGYRCC | 2 cut(s) | 103, 4550 |
| BanII | GRGCYC | 3 cut(s) | 1586, 4623, 5567 |
| BauI | CACGAG | 1 cut(s) | 5199 |
| BbsI | GAAGAC | 1 cut(s) | 5535 |
| Bbv12I | GWGCWC | 6 cut(s) | 1586, 2029, 2087, 2365, 3193, 4623 |
| BceAI | ACGGC | 1 cut(s) | 368 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 170, 204, 3065, 3099, 3218, 3252, 4307, 4341 |
| BciVI | GTATCC | 1 cut(s) | 3910 |
| BclI | TGATCA | 3 cut(s) | 2700, 5056, 5400 |
| BcnI | CCSGG | 5 cut(s) | 63, 64, 371, 4435, 5567 |
| BfoI | RGCGCY | 3 cut(s) | 107, 3442, 4743 |
| BfuAI | ACCTGC | 6 cut(s) | 1426, 2296, 2435, 3044, 3318, 4237 |
| BfuI | GTATCC | 1 cut(s) | 3910 |
| BglII | AGATCT | 2 cut(s) | 1121, 2222 |
| BlnI | CCTAGG | 1 cut(s) | 1943 |
| BmcAI | AGTACT | 3 cut(s) | 2151, 2298, 2354 |
| Bme18I | GGWCC | 9 cut(s) | 360, 1140, 1751, 2509, 2522, 2680, 2903, 4492, 5551 |
| BmeT110I | CYCGRG | 3 cut(s) | 62, 356, 805 |
| BmgBI | CACGTC | 1 cut(s) | 5548 |
| BmrI | ACTGGG | 2 cut(s) | 2201, 5570 |
| BmtI | GCTAGC | 1 cut(s) | 3399 |
| BmuI | ACTGGG | 2 cut(s) | 2201, 5570 |
| BoxI | GACNNNNGTC | 3 cut(s) | 365, 2678, 4045 |
| BpiI | GAAGAC | 1 cut(s) | 5535 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 4243, 4275, 4866, 4898 |
| BpmI | CTGGAG | 8 cut(s) | 1077, 1167, 1985, 2247, 3242, 4035, 4676, 5720 |
| BpuEI | CTTGAG | 7 cut(s) | 267, 1075, 1739, 2099, 3658, 4153, 5699 |
| BpuMI | CCSGG | 5 cut(s) | 63, 64, 371, 4435, 5567 |
| BsaAI | YACGTR | 1 cut(s) | 2779 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5484 |
| BsaHI | GRCGYC | 3 cut(s) | 68, 104, 3944 |
| BsaI | GGTCTC | 3 cut(s) | 613, 4053, 4709 |
| BsaWI | WCCGGW | 5 cut(s) | 1264, 1630, 1884, 5136, 5341 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1573, 1603, 1722, 1752, 2235, 2265, 4519, 4549 |
| Bse118I | RCCGGY | 1 cut(s) | 94 |
| Bse3DI | GCAATG | 6 cut(s) | 331, 4593, 4654, 5328, 5614, 5794 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5484 |
| BseAI | TCCGGA | 1 cut(s) | 5136 |
| BseJI | GATNNNNATC | 1 cut(s) | 5484 |
| BseMI | GCAATG | 6 cut(s) | 331, 4593, 4654, 5328, 5614, 5794 |
| BseRI | GAGGAG | 8 cut(s) | 146, 167, 170, 173, 1078, 3131, 3153, 5735 |
| BseSI | GKGCMC | 3 cut(s) | 2245, 3193, 5567 |
| BseYI | CCCAGC | 3 cut(s) | 2518, 4781, 5096 |
| BsgI | GTGCAG | 6 cut(s) | 1491, 2436, 3048, 3072, 3870, 4323 |
| Bsh1236I | CGCG | 4 cut(s) | 227, 1110, 4447, 5271 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5472 |
| BshNI | GGYRCC | 2 cut(s) | 103, 4550 |
| BsiEI | CGRYCG | 1 cut(s) | 5472 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1586, 2029, 2087, 2365, 3193, 4623 |
| BsiHKCI | CYCGRG | 3 cut(s) | 62, 356, 805 |
| BslFI | GGGAC | 9 cut(s) | 79, 373, 1218, 1663, 2666, 3402, 3916, 5036, 5558 |
| BsmBI | CGTCTC | 1 cut(s) | 3219 |
| BsmFI | GGGAC | 9 cut(s) | 79, 373, 1218, 1663, 2666, 3402, 3916, 5036, 5558 |
| BsmI | GAATGC | 2 cut(s) | 4792, 5700 |
| Bso31I | GGTCTC | 3 cut(s) | 613, 4053, 4709 |
| BsoBI | CYCGRG | 3 cut(s) | 62, 356, 805 |
| Bsp120I | GGGCCC | 1 cut(s) | 5563 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1586, 2029, 2087, 2245, 2365, 3193, 4623, 5567 |
| Bsp13I | TCCGGA | 1 cut(s) | 5136 |
| Bsp19I | CCATGG | 4 cut(s) | 12, 4036, 4523, 4609 |
| BspEI | TCCGGA | 1 cut(s) | 5136 |
| BspFNI | CGCG | 4 cut(s) | 227, 1110, 4447, 5271 |
| BspHI | TCATGA | 3 cut(s) | 2170, 2703, 3811 |
| BspMAI | CTGCAG | 7 cut(s) | 1390, 1423, 1516, 2293, 2499, 2554, 2947 |
| BspMI | ACCTGC | 6 cut(s) | 1426, 2296, 2435, 3044, 3318, 4237 |
| BspOI | GCTAGC | 1 cut(s) | 3399 |
| BspQI | GCTCTTC | 2 cut(s) | 2034, 2073 |
| BspT107I | GGYRCC | 2 cut(s) | 103, 4550 |
| BspTNI | GGTCTC | 3 cut(s) | 613, 4053, 4709 |
| BsrDI | GCAATG | 6 cut(s) | 331, 4593, 4654, 5328, 5614, 5794 |
| BsrFI | RCCGGY | 1 cut(s) | 94 |
| BssAI | RCCGGY | 1 cut(s) | 94 |
| BssNI | GRCGYC | 3 cut(s) | 68, 104, 3944 |
| BssSI | CACGAG | 1 cut(s) | 5199 |
| BssT1I | CCWWGG | 9 cut(s) | 12, 43, 192, 1943, 2543, 3489, 4036, 4523, 4609 |
| Bst2BI | CACGAG | 1 cut(s) | 5199 |
| Bst6I | CTCTTC | 8 cut(s) | 144, 297, 1011, 1271, 2034, 2073, 4076, 4359 |
| BstACI | GRCGYC | 3 cut(s) | 68, 104, 3944 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 452, 1412, 3050, 3548, 4229 |
| BstBAI | YACGTR | 1 cut(s) | 2779 |
| BstDSI | CCRYGG | 6 cut(s) | 12, 1108, 4036, 4071, 4523, 4609 |
| BstEII | GGTNACC | 3 cut(s) | 2283, 3299, 4031 |
| BstFNI | CGCG | 4 cut(s) | 227, 1110, 4447, 5271 |
| BstH2I | RGCGCY | 3 cut(s) | 107, 3442, 4743 |
| BstHHI | GCGC | 6 cut(s) | 106, 229, 1098, 2978, 3441, 4742 |
| BstMCI | CGRYCG | 1 cut(s) | 5472 |
| BstNSI | RCATGY | 4 cut(s) | 2984, 4566, 4961, 5428 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 365, 2678, 4045 |
| BstPI | GGTNACC | 3 cut(s) | 2283, 3299, 4031 |
| BstSLI | GKGCMC | 3 cut(s) | 2245, 3193, 5567 |
| BstUI | CGCG | 4 cut(s) | 227, 1110, 4447, 5271 |
| BstV2I | GAAGAC | 1 cut(s) | 5535 |
| BstX2I | RGATCY | 6 cut(s) | 1121, 1187, 2222, 3988, 5131, 5569 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 5096 |
| BstYI | RGATCY | 6 cut(s) | 1121, 1187, 2222, 3988, 5131, 5569 |
| BsuI | GTATCC | 1 cut(s) | 3910 |
| BtgI | CCRYGG | 6 cut(s) | 12, 1108, 4036, 4071, 4523, 4609 |
| BtgZI | GCGATG | 3 cut(s) | 3813, 4310, 5628 |
| BtrI | CACGTC | 1 cut(s) | 5548 |
| BtsI | GCAGTG | 3 cut(s) | 219, 2940, 5770 |
| BveI | ACCTGC | 6 cut(s) | 1426, 2296, 2435, 3044, 3318, 4237 |
| CaiI | CAGNNNCTG | 5 cut(s) | 452, 1190, 1394, 2951, 4778 |
| CciI | TCATGA | 3 cut(s) | 2170, 2703, 3811 |
| CfoI | GCGC | 6 cut(s) | 106, 229, 1098, 2978, 3441, 4742 |
| Cfr10I | RCCGGY | 1 cut(s) | 94 |
| Cfr42I | CCGCGG | 1 cut(s) | 1111 |
| Cfr9I | CCCGGG | 1 cut(s) | 62 |
| CseI | GACGC | 5 cut(s) | 76, 1527, 3952, 5277, 5318 |
| CsiI | ACCWGGT | 1 cut(s) | 2049 |
| Csp6I | GTAC | 9 cut(s) | 1623, 1757, 2150, 2297, 2353, 2955, 4551, 4652, 5162 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 3311, 3346, 3635, 3670, 5182, 5217 |
| CviQI | GTAC | 9 cut(s) | 1623, 1757, 2150, 2297, 2353, 2955, 4551, 4652, 5162 |
| DinI | GGCGCC | 1 cut(s) | 105 |
| DraI | TTTAAA | 1 cut(s) | 2202 |
| EaeI | YGGCCR | 3 cut(s) | 9, 1521, 3537 |
| Eam1104I | CTCTTC | 8 cut(s) | 144, 297, 1011, 1271, 2034, 2073, 4076, 4359 |
| EarI | CTCTTC | 8 cut(s) | 144, 297, 1011, 1271, 2034, 2073, 4076, 4359 |
| EciI | GGCGGA | 2 cut(s) | 66, 81 |
| Ecl136II | GAGCTC | 2 cut(s) | 1584, 4621 |
| Eco130I | CCWWGG | 9 cut(s) | 12, 43, 192, 1943, 2543, 3489, 4036, 4523, 4609 |
| Eco24I | GRGCYC | 3 cut(s) | 1586, 4623, 5567 |
| Eco31I | GGTCTC | 3 cut(s) | 613, 4053, 4709 |
| Eco47I | GGWCC | 9 cut(s) | 360, 1140, 1751, 2509, 2522, 2680, 2903, 4492, 5551 |
| Eco53kI | GAGCTC | 2 cut(s) | 1584, 4621 |
| Eco88I | CYCGRG | 3 cut(s) | 62, 356, 805 |
| Eco91I | GGTNACC | 3 cut(s) | 2283, 3299, 4031 |
| EcoICRI | GAGCTC | 2 cut(s) | 1584, 4621 |
| EcoO109I | RGGNCCY | 2 cut(s) | 360, 2522 |
| EcoO65I | GGTNACC | 3 cut(s) | 2283, 3299, 4031 |
| EcoRI | GAATTC | 2 cut(s) | 2707, 3382 |
| EcoT14I | CCWWGG | 9 cut(s) | 12, 43, 192, 1943, 2543, 3489, 4036, 4523, 4609 |
| EcoT22I | ATGCAT | 4 cut(s) | 2653, 3883, 4568, 4794 |
| EcoT38I | GRGCYC | 3 cut(s) | 1586, 4623, 5567 |
| EgeI | GGCGCC | 1 cut(s) | 105 |
| EheI | GGCGCC | 1 cut(s) | 105 |
| ErhI | CCWWGG | 9 cut(s) | 12, 43, 192, 1943, 2543, 3489, 4036, 4523, 4609 |
| Esp3I | CGTCTC | 1 cut(s) | 3219 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1459, 1491, 3327, 3359, 5149, 5181 |
| FaqI | GGGAC | 9 cut(s) | 79, 373, 1218, 1663, 2666, 3402, 3916, 5036, 5558 |
| FauI | CCCGC | 2 cut(s) | 3175, 5022 |
| FbaI | TGATCA | 3 cut(s) | 2700, 5056, 5400 |
| FblI | GTMKAC | 4 cut(s) | 1541, 2046, 3790, 5458 |
| FriOI | GRGCYC | 3 cut(s) | 1586, 4623, 5567 |
| GlaI | GCGC | 6 cut(s) | 105, 228, 1097, 2977, 3440, 4741 |
| GsaI | CCCAGC | 3 cut(s) | 2522, 4785, 5100 |
| GsuI | CTGGAG | 8 cut(s) | 1077, 1167, 1985, 2247, 3242, 4035, 4676, 5720 |
| HaeII | RGCGCY | 3 cut(s) | 107, 3442, 4743 |
| HgaI | GACGC | 5 cut(s) | 76, 1527, 3952, 5277, 5318 |
| HhaI | GCGC | 6 cut(s) | 106, 229, 1098, 2978, 3441, 4742 |
| Hin1I | GRCGYC | 3 cut(s) | 68, 104, 3944 |
| Hin6I | GCGC | 6 cut(s) | 104, 227, 1096, 2976, 3439, 4740 |
| HinP1I | GCGC | 6 cut(s) | 104, 227, 1096, 2976, 3439, 4740 |
| HincII | GTYRAC | 3 cut(s) | 696, 5317, 5459 |
| HindII | GTYRAC | 3 cut(s) | 696, 5317, 5459 |
| HindIII | AAGCTT | 1 cut(s) | 203 |
| HpaI | GTTAAC | 1 cut(s) | 5317 |
| Hpy99I | CGWCG | 9 cut(s) | 182, 5271, 5463, 5477, 5651, 5654, 5657, 5735, 5738 |
| HpyCH4IV | ACGT | 3 cut(s) | 962, 2778, 5547 |
| HpySE526I | ACGT | 3 cut(s) | 962, 2778, 5547 |
| Hsp92I | GRCGYC | 3 cut(s) | 68, 104, 3944 |
| HspAI | GCGC | 6 cut(s) | 104, 227, 1096, 2976, 3439, 4740 |
| KasI | GGCGCC | 1 cut(s) | 103 |
| Kpn2I | TCCGGA | 1 cut(s) | 5136 |
| KpnI | GGTACC | 1 cut(s) | 4554 |
| KroI | GCCGGC | 1 cut(s) | 94 |
| KroNI | GCCGGC | 1 cut(s) | 96 |
| Ksp22I | TGATCA | 3 cut(s) | 2700, 5056, 5400 |
| KspAI | GTTAAC | 1 cut(s) | 5317 |
| KspI | CCGCGG | 1 cut(s) | 1111 |
| LguI | GCTCTTC | 2 cut(s) | 2034, 2073 |
| LmnI | GCTCC | 7 cut(s) | 276, 1215, 1581, 2014, 2614, 2942, 2989 |
| MabI | ACCWGGT | 1 cut(s) | 2049 |
| MaeII | ACGT | 3 cut(s) | 962, 2778, 5547 |
| MfeI | CAATTG | 1 cut(s) | 3372 |
| MflI | RGATCY | 6 cut(s) | 1121, 1187, 2222, 3988, 5131, 5569 |
| MhlI | GDGCHC | 8 cut(s) | 1586, 2029, 2087, 2245, 2365, 3193, 4623, 5567 |
| MluI | ACGCGT | 2 cut(s) | 4445, 5269 |
| Mly113I | GGCGCC | 1 cut(s) | 104 |
| MmeI | TCCRAC | 6 cut(s) | 1321, 2574, 3169, 4087, 4543, 4890 |
| Mph1103I | ATGCAT | 4 cut(s) | 2653, 3883, 4568, 4794 |
| MroI | TCCGGA | 1 cut(s) | 5136 |
| MroNI | GCCGGC | 1 cut(s) | 94 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3285, 3519 |
| MslI | CAYNNNNRTG | 5 cut(s) | 879, 1644, 2334, 4029, 4380 |
| MspA1I | CMGCKG | 5 cut(s) | 101, 449, 1110, 2921, 3548 |
| MunI | CAATTG | 1 cut(s) | 3372 |
| Mva1269I | GAATGC | 2 cut(s) | 4792, 5700 |
| MvnI | CGCG | 4 cut(s) | 227, 1110, 4447, 5271 |
| NaeI | GCCGGC | 1 cut(s) | 96 |
| NarI | GGCGCC | 1 cut(s) | 104 |
| NciI | CCSGG | 5 cut(s) | 63, 64, 371, 4435, 5567 |
| NcoI | CCATGG | 4 cut(s) | 12, 4036, 4523, 4609 |
| NgoMIV | GCCGGC | 1 cut(s) | 94 |
| NheI | GCTAGC | 1 cut(s) | 3395 |
| NmeAIII | GCCGAG | 2 cut(s) | 2812, 3227 |
| NmuCI | GTSAC | 7 cut(s) | 2283, 2671, 3376, 4031, 4253, 5633, 5707 |
| NsiI | ATGCAT | 4 cut(s) | 2653, 3883, 4568, 4794 |
| NspI | RCATGY | 4 cut(s) | 2984, 4566, 4961, 5428 |
| OliI | CACNNNNGTG | 2 cut(s) | 2334, 4029 |
| PagI | TCATGA | 3 cut(s) | 2170, 2703, 3811 |
| PaqCI | CACCTGC | 4 cut(s) | 1426, 2296, 3318, 4237 |
| PciI | ACATGT | 2 cut(s) | 4957, 5424 |
| PciSI | GCTCTTC | 2 cut(s) | 2034, 2073 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 2784, 4492, 5481, 5544, 5643 |
| PctI | GAATGC | 2 cut(s) | 4792, 5700 |
| PdiI | GCCGGC | 1 cut(s) | 96 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3285, 3519 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1190, 2261 |
| PfoI | TCCNGGA | 4 cut(s) | 369, 1183, 1326, 1665 |
| PluTI | GGCGCC | 1 cut(s) | 107 |
| Ppu21I | YACGTR | 1 cut(s) | 2779 |
| PpuMI | RGGWCCY | 2 cut(s) | 360, 2522 |
| PscI | ACATGT | 2 cut(s) | 4957, 5424 |
| PshAI | GACNNNNGTC | 3 cut(s) | 365, 2678, 4045 |
| PshBI | ATTAAT | 2 cut(s) | 395, 3506 |
| PsiI | TTATAA | 1 cut(s) | 5114 |
| Psp124BI | GAGCTC | 2 cut(s) | 1586, 4623 |
| Psp1406I | AACGTT | 1 cut(s) | 962 |
| Psp5II | RGGWCCY | 2 cut(s) | 360, 2522 |
| PspEI | GGTNACC | 3 cut(s) | 2283, 3299, 4031 |
| PspFI | CCCAGC | 3 cut(s) | 2518, 4781, 5096 |
| PspOMI | GGGCCC | 1 cut(s) | 5563 |
| PspPPI | RGGWCCY | 2 cut(s) | 360, 2522 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4677, 4709 |
| PstI | CTGCAG | 7 cut(s) | 1390, 1423, 1516, 2293, 2499, 2554, 2947 |
| PstNI | CAGNNNCTG | 5 cut(s) | 452, 1190, 1394, 2951, 4778 |
| PsuI | RGATCY | 6 cut(s) | 1121, 1187, 2222, 3988, 5131, 5569 |
| PvuII | CAGCTG | 3 cut(s) | 449, 2921, 3548 |
| RsaI | GTAC | 9 cut(s) | 1624, 1758, 2151, 2298, 2354, 2956, 4552, 4653, 5163 |
| RsaNI | GTAC | 9 cut(s) | 1623, 1757, 2150, 2297, 2353, 2955, 4551, 4652, 5162 |
| RseI | CAYNNNNRTG | 5 cut(s) | 879, 1644, 2334, 4029, 4380 |
| SacI | GAGCTC | 2 cut(s) | 1586, 4623 |
| SacII | CCGCGG | 1 cut(s) | 1111 |
| SalI | GTCGAC | 1 cut(s) | 5457 |
| SapI | GCTCTTC | 2 cut(s) | 2034, 2073 |
| ScaI | AGTACT | 3 cut(s) | 2151, 2298, 2354 |
| SduI | GDGCHC | 8 cut(s) | 1586, 2029, 2087, 2245, 2365, 3193, 4623, 5567 |
| SexAI | ACCWGGT | 1 cut(s) | 2049 |
| SfoI | GGCGCC | 1 cut(s) | 105 |
| Sfr303I | CCGCGG | 1 cut(s) | 1111 |
| SgrBI | CCGCGG | 1 cut(s) | 1111 |
| SinI | GGWCC | 9 cut(s) | 360, 1140, 1751, 2509, 2522, 2680, 2903, 4492, 5551 |
| SmaI | CCCGGG | 1 cut(s) | 64 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 879, 1644, 2334, 4029, 4380 |
| SmlI | CTYRAG | 7 cut(s) | 282, 1090, 1718, 2078, 3673, 4132, 5678 |
| SmoI | CTYRAG | 7 cut(s) | 282, 1090, 1718, 2078, 3673, 4132, 5678 |
| SspDI | GGCGCC | 1 cut(s) | 103 |
| SspI | AATATT | 1 cut(s) | 1703 |
| SstI | GAGCTC | 2 cut(s) | 1586, 4623 |
| StyI | CCWWGG | 9 cut(s) | 12, 43, 192, 1943, 2543, 3489, 4036, 4523, 4609 |
| TaiI | ACGT | 3 cut(s) | 965, 2781, 5550 |
| TaqII | GACCGA | 3 cut(s) | 2526, 4035, 5486 |
| TatI | WGTACW | 6 cut(s) | 1622, 1756, 2149, 2296, 2352, 4651 |
| TauI | GCSGC | 9 cut(s) | 11, 104, 227, 1526, 2350, 2694, 3464, 3542, 5294 |
| TseFI | GTSAC | 7 cut(s) | 2283, 2671, 3376, 4031, 4253, 5633, 5707 |
| Tsp45I | GTSAC | 7 cut(s) | 2283, 2671, 3376, 4031, 4253, 5633, 5707 |
| TspGWI | ACGGA | 9 cut(s) | 803, 1228, 2206, 3176, 3327, 5081, 5670, 5726, 5730 |
| TspMI | CCCGGG | 1 cut(s) | 62 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1190, 2261 |
| VneI | GTGCAC | 1 cut(s) | 3189 |
| VpaK11BI | GGWCC | 9 cut(s) | 360, 1140, 1751, 2509, 2522, 2680, 2903, 4492, 5551 |
| VspI | ATTAAT | 2 cut(s) | 395, 3506 |
| XbaI | TCTAGA | 2 cut(s) | 1124, 4288 |
| XceI | RCATGY | 4 cut(s) | 2984, 4566, 4961, 5428 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1111, 2897 |
| XmaI | CCCGGG | 1 cut(s) | 62 |
| XmaJI | CCTAGG | 1 cut(s) | 1943 |
| XmiI | GTMKAC | 4 cut(s) | 1541, 2046, 3790, 5458 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3285, 3519 |
| ZrmI | AGTACT | 3 cut(s) | 2151, 2298, 2354 |
| Zsp2I | ATGCAT | 4 cut(s) | 2653, 3883, 4568, 4794 |