DDB1- and CUL4-associated factor homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31160 |
| fragaria_vesca | FvH4_2g30560 |
| malus_domestica | MD08G1132100.v1.1 MD15G1113300.v1.1 |
| prunus_persica | Prupe.1G463700_v2.0.a1 |
| pyrus_communis | pycom08g11060 pycom15g10160 |
| rosa_chinensis | RchiOBHm_Chr6g0312521 |
| rosa_laevigata | RLG00000010322 |
| rosa_multiflora | Rmu_sc0003094.1_g000015 Rmu_sc0035272.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00156780 |
| rosa_rugosa | Rorug06G0396000 |
| rosa_samantha | Rh6AG513400 Rh6BG526600 Rh6CG531500 Rh6DG515500 |
| rosa_wichuraiana | Rw6G044640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5096 |
| AarI | CACCTGC | 5 cut(s) | 1357, 2227, 2962, 3005, 3288 |
| AatII | GACGTC | 1 cut(s) | 677 |
| Acc16I | TGCGCA | 1 cut(s) | 4648 |
| Acc36I | ACCTGC | 7 cut(s) | 823, 1357, 2227, 2962, 3005, 3016, 3288 |
| AccB1I | GGYRCC | 2 cut(s) | 3020, 4532 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 923, 1109 |
| AccBSI | CCGCTC | 1 cut(s) | 4571 |
| AccI | GTMKAC | 1 cut(s) | 1707 |
| AccII | CGCG | 4 cut(s) | 203, 3078, 4431, 5184 |
| AccIII | TCCGGA | 1 cut(s) | 5118 |
| AcoI | YGGCCR | 3 cut(s) | 9, 3507, 4588 |
| AcyI | GRCGYC | 1 cut(s) | 674 |
| AdeI | CACNNNGTG | 1 cut(s) | 3647 |
| AfaI | GTAC | 8 cut(s) | 1689, 2229, 2923, 3370, 3615, 4426, 4635, 5145 |
| AflII | CTTAAG | 1 cut(s) | 4114 |
| AflIII | ACRYGT | 2 cut(s) | 4363, 5251 |
| AjiI | CACGTC | 1 cut(s) | 5252 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 551, 583 |
| AleI | CACNNNNGTG | 2 cut(s) | 2265, 4011 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1551, 1583 |
| Alw21I | GWGCWC | 5 cut(s) | 1517, 1960, 3163, 3336, 4605 |
| Alw44I | GTGCAC | 1 cut(s) | 3159 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 428, 838, 1109, 1325, 1861, 2918, 3383 |
| Ama87I | CYCGRG | 1 cut(s) | 1516 |
| Aor13HI | TCCGGA | 1 cut(s) | 5118 |
| ApaI | GGGCCC | 2 cut(s) | 4770, 5549 |
| ApaLI | GTGCAC | 1 cut(s) | 3159 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| AseI | ATTAAT | 1 cut(s) | 371 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3255, 3489 |
| AspA2I | CCTAGG | 1 cut(s) | 1874 |
| AspLEI | GCGC | 7 cut(s) | 61, 85, 205, 1017, 3080, 3411, 4649 |
| AsuC2I | CCSGG | 4 cut(s) | 347, 2075, 4417, 4852 |
| AsuHPI | GGTGA | 9 cut(s) | 526, 1385, 2208, 3123, 4025, 4610, 4706, 5101, 5765 |
| AsuII | TTCGAA | 1 cut(s) | 2203 |
| AsuNHI | GCTAGC | 1 cut(s) | 4919 |
| AvaI | CYCGRG | 1 cut(s) | 1516 |
| AvrII | CCTAGG | 1 cut(s) | 1874 |
| AxyI | CCTNAGG | 1 cut(s) | 31 |
| BaeGI | GKGCMC | 4 cut(s) | 3163, 4537, 4770, 5549 |
| BamHI | GGATCC | 1 cut(s) | 3970 |
| BanI | GGYRCC | 2 cut(s) | 3020, 4532 |
| BanII | GRGCYC | 6 cut(s) | 1517, 2296, 3336, 4605, 4770, 5549 |
| BauI | CACGAG | 2 cut(s) | 306, 2309 |
| BbsI | GAAGAC | 4 cut(s) | 123, 156, 611, 4070 |
| Bbv12I | GWGCWC | 5 cut(s) | 1517, 1960, 3163, 3336, 4605 |
| BbvCI | CCTCAGC | 2 cut(s) | 933, 4242 |
| BceAI | ACGGC | 2 cut(s) | 344, 398 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 146, 180, 1595, 1629, 2614, 2648, 3035, 3069 |
| BciVI | GTATCC | 1 cut(s) | 4173 |
| BclI | TGATCA | 2 cut(s) | 5038, 5382 |
| BcnI | CCSGG | 4 cut(s) | 347, 2075, 4417, 4852 |
| BfoI | RGCGCY | 2 cut(s) | 62, 86 |
| BfrI | CTTAAG | 1 cut(s) | 4114 |
| BfuAI | ACCTGC | 7 cut(s) | 823, 1357, 2227, 2962, 3005, 3016, 3288 |
| BfuI | GTATCC | 1 cut(s) | 4173 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 419, 3029 |
| BglII | AGATCT | 5 cut(s) | 945, 1040, 1313, 2153, 5551 |
| BlnI | CCTAGG | 1 cut(s) | 1874 |
| BmeT110I | CYCGRG | 1 cut(s) | 1516 |
| BmgBI | CACGTC | 1 cut(s) | 5252 |
| BmrI | ACTGGG | 3 cut(s) | 2132, 3814, 5552 |
| BmtI | GCTAGC | 1 cut(s) | 4923 |
| BmuI | ACTGGG | 3 cut(s) | 2132, 3814, 5552 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1713, 5724 |
| BpiI | GAAGAC | 4 cut(s) | 123, 156, 611, 4070 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 4225, 4257, 4848, 4880 |
| BpmI | CTGGAG | 8 cut(s) | 1086, 1916, 2178, 3212, 4017, 4658, 5240, 5705 |
| Bpu10I | CCTNAGC | 2 cut(s) | 933, 4242 |
| Bpu14I | TTCGAA | 1 cut(s) | 2203 |
| BpuEI | CTTGAG | 5 cut(s) | 84, 243, 994, 1670, 2787 |
| BpuMI | CCSGG | 4 cut(s) | 347, 2075, 4417, 4852 |
| BsaBI | GATNNNNATC | 2 cut(s) | 753, 5466 |
| BsaHI | GRCGYC | 1 cut(s) | 674 |
| BsaI | GGTCTC | 2 cut(s) | 589, 4691 |
| BsaWI | WCCGGW | 3 cut(s) | 2442, 4691, 5118 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1504, 1534, 1653, 1683 |
| Bse118I | RCCGGY | 2 cut(s) | 3023, 4308 |
| Bse21I | CCTNAGG | 1 cut(s) | 31 |
| Bse3DI | GCAATG | 9 cut(s) | 307, 1773, 2407, 3336, 4258, 4319, 4636, 5310, 5599 |
| Bse8I | GATNNNNATC | 2 cut(s) | 753, 5466 |
| BseAI | TCCGGA | 1 cut(s) | 5118 |
| BseJI | GATNNNNATC | 2 cut(s) | 753, 5466 |
| BseMI | GCAATG | 9 cut(s) | 307, 1773, 2407, 3336, 4258, 4319, 4636, 5310, 5599 |
| BseRI | GAGGAG | 5 cut(s) | 149, 997, 3101, 5685, 5720 |
| BseSI | GKGCMC | 4 cut(s) | 3163, 4537, 4770, 5549 |
| BseYI | CCCAGC | 3 cut(s) | 48, 4701, 5078 |
| BsgI | GTGCAG | 3 cut(s) | 2718, 2928, 3018 |
| Bsh1236I | CGCG | 4 cut(s) | 203, 3078, 4431, 5184 |
| BshNI | GGYRCC | 2 cut(s) | 3020, 4532 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1517, 1960, 3163, 3336, 4605 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1516 |
| BslFI | GGGAC | 9 cut(s) | 1143, 1594, 1856, 2597, 3775, 3898, 4302, 4950, 5018 |
| BsmBI | CGTCTC | 1 cut(s) | 993 |
| BsmFI | GGGAC | 9 cut(s) | 1143, 1594, 1856, 2597, 3775, 3898, 4302, 4950, 5018 |
| BsmI | GAATGC | 2 cut(s) | 4774, 5276 |
| Bso31I | GGTCTC | 2 cut(s) | 589, 4691 |
| BsoBI | CYCGRG | 1 cut(s) | 1516 |
| Bsp119I | TTCGAA | 1 cut(s) | 2203 |
| Bsp120I | GGGCCC | 2 cut(s) | 4766, 5545 |
| Bsp1286I | GDGCHC | 9 cut(s) | 1517, 1960, 2296, 3163, 3336, 4537, 4605, 4770, 5549 |
| Bsp13I | TCCGGA | 1 cut(s) | 5118 |
| Bsp1407I | TGTACA | 1 cut(s) | 3613 |
| Bsp19I | CCATGG | 3 cut(s) | 12, 4505, 4591 |
| Bsp68I | TCGCGA | 1 cut(s) | 4431 |
| BspEI | TCCGGA | 1 cut(s) | 5118 |
| BspFNI | CGCG | 4 cut(s) | 203, 3078, 4431, 5184 |
| BspMI | ACCTGC | 7 cut(s) | 823, 1357, 2227, 2962, 3005, 3016, 3288 |
| BspOI | GCTAGC | 1 cut(s) | 4923 |
| BspQI | GCTCTTC | 3 cut(s) | 1965, 2004, 4839 |
| BspT104I | TTCGAA | 1 cut(s) | 2203 |
| BspT107I | GGYRCC | 2 cut(s) | 3020, 4532 |
| BspTI | CTTAAG | 1 cut(s) | 4114 |
| BspTNI | GGTCTC | 2 cut(s) | 589, 4691 |
| BsrBI | CCGCTC | 1 cut(s) | 4571 |
| BsrDI | GCAATG | 9 cut(s) | 307, 1773, 2407, 3336, 4258, 4319, 4636, 5310, 5599 |
| BsrFI | RCCGGY | 2 cut(s) | 3023, 4308 |
| BsrGI | TGTACA | 1 cut(s) | 3613 |
| BssAI | RCCGGY | 2 cut(s) | 3023, 4308 |
| BssNI | GRCGYC | 1 cut(s) | 674 |
| BssSI | CACGAG | 2 cut(s) | 306, 2309 |
| BssT1I | CCWWGG | 9 cut(s) | 12, 168, 863, 1874, 3181, 3561, 4018, 4505, 4591 |
| Bst2BI | CACGAG | 2 cut(s) | 306, 2309 |
| Bst6I | CTCTTC | 7 cut(s) | 126, 273, 1965, 2004, 4341, 4765, 4839 |
| BstACI | GRCGYC | 1 cut(s) | 674 |
| BstAFI | CTTAAG | 1 cut(s) | 4114 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1343, 1861, 2957, 3020, 3518 |
| BstAUI | TGTACA | 1 cut(s) | 3613 |
| BstBI | TTCGAA | 1 cut(s) | 2203 |
| BstDSI | CCRYGG | 5 cut(s) | 12, 1027, 4459, 4505, 4591 |
| BstEII | GGTNACC | 2 cut(s) | 2214, 4013 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3012 |
| BstFNI | CGCG | 4 cut(s) | 203, 3078, 4431, 5184 |
| BstH2I | RGCGCY | 2 cut(s) | 62, 86 |
| BstHHI | GCGC | 7 cut(s) | 61, 85, 205, 1017, 3080, 3411, 4649 |
| BstNSI | RCATGY | 5 cut(s) | 1855, 2801, 4367, 4447, 4548 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1713, 5724 |
| BstPI | GGTNACC | 2 cut(s) | 2214, 4013 |
| BstSLI | GKGCMC | 4 cut(s) | 3163, 4537, 4770, 5549 |
| BstUI | CGCG | 4 cut(s) | 203, 3078, 4431, 5184 |
| BstV2I | GAAGAC | 4 cut(s) | 123, 156, 611, 4070 |
| BstX2I | RGATCY | 8 cut(s) | 945, 1040, 1106, 1313, 2153, 3970, 5113, 5551 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 5078 |
| BstYI | RGATCY | 8 cut(s) | 945, 1040, 1106, 1313, 2153, 3970, 5113, 5551 |
| Bsu36I | CCTNAGG | 1 cut(s) | 31 |
| BsuI | GTATCC | 1 cut(s) | 4173 |
| BtgI | CCRYGG | 5 cut(s) | 12, 1027, 4459, 4505, 4591 |
| BtgZI | GCGATG | 1 cut(s) | 5202 |
| BtrI | CACGTC | 1 cut(s) | 5252 |
| BtsI | GCAGTG | 2 cut(s) | 3524, 5755 |
| BtsIMutI | CAGTG | 9 cut(s) | 1649, 2184, 3381, 3524, 3629, 3802, 4008, 5578, 5755 |
| BtuMI | TCGCGA | 1 cut(s) | 4431 |
| BveI | ACCTGC | 7 cut(s) | 823, 1357, 2227, 2962, 3005, 3016, 3288 |
| CaiI | CAGNNNCTG | 7 cut(s) | 428, 838, 1109, 1325, 1861, 2918, 3383 |
| CfoI | GCGC | 7 cut(s) | 61, 85, 205, 1017, 3080, 3411, 4649 |
| Cfr10I | RCCGGY | 2 cut(s) | 3023, 4308 |
| CsiI | ACCWGGT | 2 cut(s) | 1980, 2917 |
| Csp6I | GTAC | 8 cut(s) | 1688, 2228, 2922, 3369, 3614, 4425, 4634, 5144 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3281, 3316, 3605, 3640 |
| CviQI | GTAC | 8 cut(s) | 1688, 2228, 2922, 3369, 3614, 4425, 4634, 5144 |
| DraI | TTTAAA | 1 cut(s) | 2133 |
| DraIII | CACNNNGTG | 1 cut(s) | 3647 |
| EaeI | YGGCCR | 3 cut(s) | 9, 3507, 4588 |
| Eam1104I | CTCTTC | 7 cut(s) | 126, 273, 1965, 2004, 4341, 4765, 4839 |
| EarI | CTCTTC | 7 cut(s) | 126, 273, 1965, 2004, 4341, 4765, 4839 |
| EciI | GGCGGA | 2 cut(s) | 66, 2532 |
| Ecl136II | GAGCTC | 3 cut(s) | 1515, 3334, 4603 |
| Eco130I | CCWWGG | 9 cut(s) | 12, 168, 863, 1874, 3181, 3561, 4018, 4505, 4591 |
| Eco24I | GRGCYC | 6 cut(s) | 1517, 2296, 3336, 4605, 4770, 5549 |
| Eco31I | GGTCTC | 2 cut(s) | 589, 4691 |
| Eco32I | GATATC | 1 cut(s) | 1285 |
| Eco53kI | GAGCTC | 3 cut(s) | 1515, 3334, 4603 |
| Eco81I | CCTNAGG | 1 cut(s) | 31 |
| Eco88I | CYCGRG | 1 cut(s) | 1516 |
| Eco91I | GGTNACC | 2 cut(s) | 2214, 4013 |
| EcoICRI | GAGCTC | 3 cut(s) | 1515, 3334, 4603 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3012 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2453, 3005, 4996 |
| EcoO65I | GGTNACC | 2 cut(s) | 2214, 4013 |
| EcoRI | GAATTC | 2 cut(s) | 1415, 2638 |
| EcoRV | GATATC | 1 cut(s) | 1285 |
| EcoT14I | CCWWGG | 9 cut(s) | 12, 168, 863, 1874, 3181, 3561, 4018, 4505, 4591 |
| EcoT22I | ATGCAT | 4 cut(s) | 2584, 3865, 4550, 4776 |
| EcoT38I | GRGCYC | 6 cut(s) | 1517, 2296, 3336, 4605, 4770, 5549 |
| ErhI | CCWWGG | 9 cut(s) | 12, 168, 863, 1874, 3181, 3561, 4018, 4505, 4591 |
| Esp3I | CGTCTC | 1 cut(s) | 993 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2362, 2394, 3297, 3329 |
| FaqI | GGGAC | 9 cut(s) | 1143, 1594, 1856, 2597, 3775, 3898, 4302, 4950, 5018 |
| FauI | CCCGC | 1 cut(s) | 4327 |
| FbaI | TGATCA | 2 cut(s) | 5038, 5382 |
| FblI | GTMKAC | 1 cut(s) | 1707 |
| FriOI | GRGCYC | 6 cut(s) | 1517, 2296, 3336, 4605, 4770, 5549 |
| FspI | TGCGCA | 1 cut(s) | 4648 |
| GlaI | GCGC | 7 cut(s) | 60, 84, 204, 1016, 3079, 3410, 4648 |
| GsaI | CCCAGC | 3 cut(s) | 52, 4705, 5082 |
| GsuI | CTGGAG | 8 cut(s) | 1086, 1916, 2178, 3212, 4017, 4658, 5240, 5705 |
| HaeII | RGCGCY | 2 cut(s) | 62, 86 |
| HhaI | GCGC | 7 cut(s) | 61, 85, 205, 1017, 3080, 3411, 4649 |
| Hin1I | GRCGYC | 1 cut(s) | 674 |
| Hin6I | GCGC | 7 cut(s) | 59, 83, 203, 1015, 3078, 3409, 4647 |
| HinP1I | GCGC | 7 cut(s) | 59, 83, 203, 1015, 3078, 3409, 4647 |
| HincII | GTYRAC | 3 cut(s) | 672, 1978, 5299 |
| HindII | GTYRAC | 3 cut(s) | 672, 1978, 5299 |
| HindIII | AAGCTT | 2 cut(s) | 179, 2406 |
| HpaI | GTTAAC | 1 cut(s) | 5299 |
| HphI | GGTGA | 9 cut(s) | 526, 1385, 2208, 3123, 4025, 4610, 4706, 5101, 5765 |
| Hpy99I | CGWCG | 7 cut(s) | 125, 158, 5253, 5627, 5717, 5720, 5723 |
| HpyCH4IV | ACGT | 6 cut(s) | 674, 1710, 2606, 2875, 4000, 5251 |
| HpySE526I | ACGT | 6 cut(s) | 674, 1710, 2606, 2875, 4000, 5251 |
| Hsp92I | GRCGYC | 1 cut(s) | 674 |
| HspAI | GCGC | 7 cut(s) | 59, 83, 203, 1015, 3078, 3409, 4647 |
| Kpn2I | TCCGGA | 1 cut(s) | 5118 |
| KroI | GCCGGC | 1 cut(s) | 3023 |
| KroNI | GCCGGC | 1 cut(s) | 3025 |
| Ksp22I | TGATCA | 2 cut(s) | 5038, 5382 |
| KspAI | GTTAAC | 1 cut(s) | 5299 |
| LguI | GCTCTTC | 3 cut(s) | 1965, 2004, 4839 |
| LmnI | GCTCC | 8 cut(s) | 1134, 1512, 1945, 2545, 3231, 3270, 3610, 4727 |
| MabI | ACCWGGT | 2 cut(s) | 1980, 2917 |
| MaeII | ACGT | 6 cut(s) | 674, 1710, 2606, 2875, 4000, 5251 |
| MbiI | CCGCTC | 1 cut(s) | 4571 |
| MfeI | CAATTG | 1 cut(s) | 3327 |
| MflI | RGATCY | 8 cut(s) | 945, 1040, 1106, 1313, 2153, 3970, 5113, 5551 |
| MhlI | GDGCHC | 9 cut(s) | 1517, 1960, 2296, 3163, 3336, 4537, 4605, 4770, 5549 |
| MmeI | TCCRAC | 8 cut(s) | 372, 1252, 2505, 2955, 3139, 3214, 4525, 4872 |
| Mph1103I | ATGCAT | 4 cut(s) | 2584, 3865, 4550, 4776 |
| MroI | TCCGGA | 1 cut(s) | 5118 |
| MroNI | GCCGGC | 1 cut(s) | 3023 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3255, 3489 |
| MslI | CAYNNNNRTG | 8 cut(s) | 855, 1575, 2265, 4011, 4055, 4362, 4596, 4779 |
| MspA1I | CMGCKG | 4 cut(s) | 425, 3518, 4705, 5237 |
| MspCI | CTTAAG | 1 cut(s) | 4114 |
| MunI | CAATTG | 1 cut(s) | 3327 |
| Mva1269I | GAATGC | 2 cut(s) | 4774, 5276 |
| MvnI | CGCG | 4 cut(s) | 203, 3078, 4431, 5184 |
| NaeI | GCCGGC | 1 cut(s) | 3025 |
| NciI | CCSGG | 4 cut(s) | 347, 2075, 4417, 4852 |
| NcoI | CCATGG | 3 cut(s) | 12, 4505, 4591 |
| NgoMIV | GCCGGC | 1 cut(s) | 3023 |
| NheI | GCTAGC | 1 cut(s) | 4919 |
| NmeAIII | GCCGAG | 1 cut(s) | 1630 |
| NmuCI | GTSAC | 7 cut(s) | 2214, 3346, 4013, 4235, 4680, 5615, 5692 |
| NruI | TCGCGA | 1 cut(s) | 4431 |
| NsbI | TGCGCA | 1 cut(s) | 4648 |
| NsiI | ATGCAT | 4 cut(s) | 2584, 3865, 4550, 4776 |
| NspI | RCATGY | 5 cut(s) | 1855, 2801, 4367, 4447, 4548 |
| NspV | TTCGAA | 1 cut(s) | 2203 |
| OliI | CACNNNNGTG | 2 cut(s) | 2265, 4011 |
| PaeI | GCATGC | 2 cut(s) | 1855, 2801 |
| PaeR7I | CTCGAG | 1 cut(s) | 1516 |
| PaqCI | CACCTGC | 5 cut(s) | 1357, 2227, 2962, 3005, 3288 |
| PciI | ACATGT | 1 cut(s) | 4363 |
| PciSI | GCTCTTC | 3 cut(s) | 1965, 2004, 4839 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 120, 4474, 5631, 5718 |
| PctI | GAATGC | 2 cut(s) | 4774, 5276 |
| PdiI | GCCGGC | 1 cut(s) | 3025 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3255, 3489 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 923, 1109 |
| PfoI | TCCNGGA | 3 cut(s) | 345, 1102, 1257 |
| PpuMI | RGGWCCY | 3 cut(s) | 2453, 3005, 4996 |
| PscI | ACATGT | 1 cut(s) | 4363 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1713, 5724 |
| PshBI | ATTAAT | 1 cut(s) | 371 |
| PsiI | TTATAA | 1 cut(s) | 5096 |
| Psp124BI | GAGCTC | 3 cut(s) | 1517, 3336, 4605 |
| Psp5II | RGGWCCY | 3 cut(s) | 2453, 3005, 4996 |
| PspEI | GGTNACC | 2 cut(s) | 2214, 4013 |
| PspFI | CCCAGC | 3 cut(s) | 48, 4701, 5078 |
| PspOMI | GGGCCC | 2 cut(s) | 4766, 5545 |
| PspPPI | RGGWCCY | 3 cut(s) | 2453, 3005, 4996 |
| PspXI | VCTCGAGB | 1 cut(s) | 1516 |
| PstNI | CAGNNNCTG | 7 cut(s) | 428, 838, 1109, 1325, 1861, 2918, 3383 |
| PsuI | RGATCY | 8 cut(s) | 945, 1040, 1106, 1313, 2153, 3970, 5113, 5551 |
| PvuII | CAGCTG | 3 cut(s) | 425, 3518, 4705 |
| RruI | TCGCGA | 1 cut(s) | 4431 |
| RsaI | GTAC | 8 cut(s) | 1689, 2229, 2923, 3370, 3615, 4426, 4635, 5145 |
| RsaNI | GTAC | 8 cut(s) | 1688, 2228, 2922, 3369, 3614, 4425, 4634, 5144 |
| RseI | CAYNNNNRTG | 8 cut(s) | 855, 1575, 2265, 4011, 4055, 4362, 4596, 4779 |
| SacI | GAGCTC | 3 cut(s) | 1517, 3336, 4605 |
| SapI | GCTCTTC | 3 cut(s) | 1965, 2004, 4839 |
| SduI | GDGCHC | 9 cut(s) | 1517, 1960, 2296, 3163, 3336, 4537, 4605, 4770, 5549 |
| SexAI | ACCWGGT | 2 cut(s) | 1980, 2917 |
| Sfr274I | CTCGAG | 1 cut(s) | 1516 |
| SfuI | TTCGAA | 1 cut(s) | 2203 |
| SlaI | CTCGAG | 1 cut(s) | 1516 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 855, 1575, 2265, 4011, 4055, 4362, 4596, 4779 |
| SmlI | CTYRAG | 7 cut(s) | 99, 258, 1009, 1516, 1649, 2802, 4114 |
| SmoI | CTYRAG | 7 cut(s) | 99, 258, 1009, 1516, 1649, 2802, 4114 |
| SphI | GCATGC | 2 cut(s) | 1855, 2801 |
| SstI | GAGCTC | 3 cut(s) | 1517, 3336, 4605 |
| StyI | CCWWGG | 9 cut(s) | 12, 168, 863, 1874, 3181, 3561, 4018, 4505, 4591 |
| TaiI | ACGT | 6 cut(s) | 677, 1713, 2609, 2878, 4003, 5254 |
| TaqII | GACCGA | 1 cut(s) | 2137 |
| TatI | WGTACW | 4 cut(s) | 1687, 3368, 3613, 4633 |
| TauI | GCSGC | 8 cut(s) | 11, 2281, 2351, 2625, 3143, 3512, 4590, 5187 |
| TscAI | CASTG | 9 cut(s) | 1649, 2191, 3388, 3531, 3629, 3809, 4015, 5578, 5755 |
| TseFI | GTSAC | 7 cut(s) | 2214, 3346, 4013, 4235, 4680, 5615, 5692 |
| Tsp45I | GTSAC | 7 cut(s) | 2214, 3346, 4013, 4235, 4680, 5615, 5692 |
| TspGWI | ACGGA | 4 cut(s) | 1147, 3146, 3964, 4476 |
| TspRI | CASTG | 9 cut(s) | 1649, 2191, 3388, 3531, 3629, 3809, 4015, 5578, 5755 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 923, 1109 |
| Vha464I | CTTAAG | 1 cut(s) | 4114 |
| VneI | GTGCAC | 1 cut(s) | 3159 |
| VspI | ATTAAT | 1 cut(s) | 371 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3012 |
| XbaI | TCTAGA | 3 cut(s) | 1043, 1739, 4270 |
| XceI | RCATGY | 5 cut(s) | 1855, 2801, 4367, 4447, 4548 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 425, 902, 2834 |
| XhoI | CTCGAG | 1 cut(s) | 1516 |
| XmaJI | CCTAGG | 1 cut(s) | 1874 |
| XmiI | GTMKAC | 1 cut(s) | 1707 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3255, 3489 |
| ZraI | GACGTC | 1 cut(s) | 675 |
| Zsp2I | ATGCAT | 4 cut(s) | 2584, 3865, 4550, 4776 |