Rorug06G0396000

DDB1- and CUL4-associated factor homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
54175663 .. 54207622
31960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0396000.1

Sequence Viewer

Length: 1506 bp
ATGATTTCCTCCAGATTTGAAATATTATTGATACTCTTGCGACTTGTGTTACTCTTCCCCAATAGTACTGAAGCCCTCGGTGTGCCCCAAAAATTAGTCCCAGACATCTGTTTGGGTAACATCAGCAGTAGTGTCTATCAGAAAAATGTCAACGACCTTCTCTCCTCCCTCCTTTCTCAAGGCAACGGCAGCGGGTTTTACAGTTCCTCGAGAGGCCAAAGCCCAGACAAAGTTTACGCAATAGGACTTTGTCGGGGCGATGTTGAGCCGGATGTTTGTGGAAAATGCATTAGCGACGCTACATATATTCTCACCGAGTCTTGTCCTAACGGGACGGAAGCAACTGGATGGTACGACAATTGCATGTTACGCTACTCAAAACGACCCTTGTATGGCGTCATGGAATCAAATAAACCTAGTCTCAGGATGTGCAGCCCATATGACATCGGGTTAGAGAATACGGACGACTTCAACAGAAAACTGACGGCCTTGTTGGGAAGACTAAAGAGTGCAGCCGCCGCAGGAGGTGATCTTCTCAAGTATGCTGCAGGAAACACTACGTTCGGTTCTATGTCTCAGTCGATATTTGCAGTTTTGCAGTGCACTCCCGATCTGTCGGAGATGGACTGCAGCAAATGCTTGGGTGACACTGTTGAATCCCTCCCAACGACTTGTCCTGCGAAGCACGGTGCGAGAATTGATTTTCTCAGCTGTTACTTGAGGTATGAAGATGCCCTCTTCTTCAACTCGGTAGTAGCTGCCACACCACCACCAATTTCTCCTCCTCCACCAGGATTAGGATTAGGAGAAAAGAAGCAGAGTAAAAATTCTCGGACCGTCATCATTATTGTTGTGGCAACTACTGTTCCTCTTCTACTAATTCTATCCATCTGCATTTATCTAAAATTGAGGAAGACAAAGGCAAGATTTGAAGATTGTATCCACGAACCAGGTGCAGAAGCCTTGCAGTTCGATTTTGACTCCATCAAAGTCGCTACAAATAACTTTTCAAAATCCAATGAACTTGGACGAGGTGGATTTGGCGTTGTTTACAAGGGTAGGCTTTGGAACGAAGAGGAGATAGCAGTTAAAAGGCTCTCCAGAGATTCTGCACAAGGAGAAATTGAATTTAAAAATGAGGTGGTGCTAGTGGCAAAGCTTCAACATCGAAATTTAGTTAGGCTCCTTGGTTTCTGTCTGGAGAGAAATGAAAGACTTCTTGTCTATGAGTTTGTCCCAAATGCAAGTCTTGATCATTTCGTATTTGATCCAATCAAGCGTGAACAGTTGGATTGGGAAATTCGCTACAAGATTATACTAGGGATTGGGCGAGGACTCCTTTACCTTCATGAAGATTCTCGTCTTAGAATTATCCATCGTGATCTCAAAGCAAGTAATATTTTATTAGATGCAGAAATGAACCCCAAAATTGCAGATTTTGGTATGGCAAGATTGTTTAATATCGATCAAACACAAGGCGAAACCAGTCGAGTTGTGGGAACTTAG

Protein Analysis

501

Amino Acids

55.51

Weight (kDa)

6.98

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 42 - 127 9e-24 Salt stress response/antifungal
Stress-antifung PF01657 152 - 244 2.1e-13 Salt stress response/antifungal
Pkinase PF00069 337 - 501 3.5e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 339 - 491 1.4e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 192, 516, 519
AclWI GGATC 1 cut(s) 1262
AcsI RAATTY 4 cut(s) 826, 1127, 1171, 1299
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 67, 353
AfiI CCNNNNNNNGG 3 cut(s) 392, 791, 797
AgsI TTSAA 8 cut(s) 20, 472, 656, 745, 932, 1011, 1127, 1163
AhdI GACNNNNNGTC 1 cut(s) 1220
AjnI CCWGG 2 cut(s) 790, 949
AluBI AGCT 3 cut(s) 711, 758, 1159
AluI AGCT 3 cut(s) 711, 758, 1159
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 425, 579
Alw44I GTGCAC 1 cut(s) 601
AlwI GGATC 1 cut(s) 1262
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 214, 486
ApaLI GTGCAC 1 cut(s) 601
ApeKI GCWGC 6 cut(s) 189, 432, 512, 545, 630, 758
ApoI RAATTY 4 cut(s) 826, 1127, 1171, 1299
Asp700I GAANNNNTTC 1 cut(s) 1215
AspS9I GGNCC 1 cut(s) 834
AsuHPI GGTGA 3 cut(s) 304, 539, 656
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 834
BaeGI GKGCMC 2 cut(s) 87, 605
BbsI GAAGAC 2 cut(s) 505, 920
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 6 cut(s) 201, 444, 524, 532, 642, 745
BccI CCATC 5 cut(s) 342, 616, 896, 992, 1383
BceAI ACGGC 2 cut(s) 202, 501
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 2 cut(s) 792, 951
BciVI GTATCC 1 cut(s) 950
BclI TGATCA 1 cut(s) 1252
BcoDI GTCTC 2 cut(s) 425, 579
BfaI CTAG 3 cut(s) 417, 1148, 1319
BfmI CTRYAG 2 cut(s) 546, 628
BfuI GTATCC 1 cut(s) 950
BisI GCNGC 8 cut(s) 190, 433, 513, 516, 519, 546, 631, 759
BlsI GCNGC 8 cut(s) 191, 434, 514, 517, 520, 547, 632, 760
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 792, 951
Bme18I GGWCC 1 cut(s) 834
BmeRI GACNNNNNGTC 1 cut(s) 1220
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 834
BmiI GGNNCC 1 cut(s) 1184
BmrFI CCNGG 2 cut(s) 792, 951
BmsI GCATC 2 cut(s) 721, 1399
BpiI GAAGAC 2 cut(s) 505, 920
BpmI CTGGAG 2 cut(s) 1084, 1220
BpuEI CTTGAG 3 cut(s) 162, 521, 739
Bsa29I ATCGAT 1 cut(s) 1464
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 76, 1186
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 791, 797
Bse1I ACTGG 2 cut(s) 349, 1485
BseBI CCWGG 2 cut(s) 792, 951
BseCI ATCGAT 1 cut(s) 1464
BseDI CCNNGG 2 cut(s) 76, 1186
BseGI GGATG 3 cut(s) 277, 353, 432
BseLI CCNNNNNNNGG 3 cut(s) 392, 791, 797
BseMII CTCAG 3 cut(s) 436, 590, 721
BseNI ACTGG 2 cut(s) 349, 1485
BseRI GAGGAG 4 cut(s) 154, 771, 774, 1091
BseSI GKGCMC 2 cut(s) 87, 605
BseXI GCAGC 6 cut(s) 201, 444, 524, 532, 642, 745
BsgI GTGCAG 4 cut(s) 451, 531, 975, 1095
BshFI GGCC 2 cut(s) 216, 488
BshVI ATCGAT 1 cut(s) 1464
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 3 cut(s) 83, 346, 1220
BslI CCNNNNNNNGG 3 cut(s) 392, 791, 797
BsmAI GTCTC 2 cut(s) 425, 579
BsmFI GGGAC 3 cut(s) 83, 346, 1220
BsnI GGCC 2 cut(s) 216, 488
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 87, 605
Bsp143I GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
BspACI CCGC 3 cut(s) 192, 516, 519
BspANI GGCC 2 cut(s) 216, 488
BspCNI CTCAG 3 cut(s) 435, 589, 720
BspDI ATCGAT 1 cut(s) 1464
BspHI TCATGA 1 cut(s) 1348
BspLI GGNNCC 1 cut(s) 1184
BspMAI CTGCAG 2 cut(s) 550, 632
BspPI GGATC 1 cut(s) 1262
BsrI ACTGG 2 cut(s) 349, 1485
BssECI CCNNGG 2 cut(s) 76, 1186
BssMI GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 1186
Bst2UI CCWGG 2 cut(s) 792, 951
Bst4CI ACNGT 6 cut(s) 203, 652, 689, 838, 865, 1287
Bst6I CTCTTC 4 cut(s) 59, 743, 876, 1068
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 636
BstDEI CTNAG 5 cut(s) 422, 576, 707, 1364, 1503
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 277, 353, 432
BstKTI GATC 6 cut(s) 532, 613, 1255, 1270, 1384, 1468
BstMAI GTCTC 2 cut(s) 425, 579
BstMBI GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
BstMWI GCNNNNNNNGC 4 cut(s) 189, 369, 518, 636
BstNI CCWGG 2 cut(s) 792, 951
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 790, 949
BstSFI CTRYAG 2 cut(s) 546, 628
BstSLI GKGCMC 2 cut(s) 87, 605
BstV1I GCAGC 6 cut(s) 201, 444, 524, 532, 642, 745
BstV2I GAAGAC 2 cut(s) 505, 920
Bsu15I ATCGAT 1 cut(s) 1464
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 2 cut(s) 216, 488
BsuTUI ATCGAT 1 cut(s) 1464
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 277, 353, 432
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 2 cut(s) 605, 648
CciI TCATGA 1 cut(s) 1348
Cfr13I GGNCC 1 cut(s) 834
ClaI ATCGAT 1 cut(s) 1464
CpoI CGGWCCG 1 cut(s) 834
CseI GACGC 2 cut(s) 305, 385
CsiI ACCWGGT 1 cut(s) 949
Csp6I GTAC 2 cut(s) 66, 352
CspI CGGWCCG 1 cut(s) 834
CviAII CATG 3 cut(s) 364, 400, 1349
CviQI GTAC 2 cut(s) 66, 352
DdeI CTNAG 5 cut(s) 422, 576, 707, 1364, 1503
DpnI GATC 6 cut(s) 531, 612, 1254, 1269, 1383, 1467
DpnII GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
DraI TTTAAA 1 cut(s) 1132
DriI GACNNNNNGTC 1 cut(s) 1220
Eam1104I CTCTTC 4 cut(s) 59, 743, 876, 1068
Eam1105I GACNNNNNGTC 1 cut(s) 1220
EarI CTCTTC 4 cut(s) 59, 743, 876, 1068
Eco130I CCWWGG 1 cut(s) 1186
Eco47I GGWCC 1 cut(s) 834
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 790, 949
EcoT14I CCWWGG 1 cut(s) 1186
EcoT22I ATGCAT 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 1186
FaeI CATG 3 cut(s) 367, 403, 1352
FaqI GGGAC 3 cut(s) 83, 346, 1220
FatI CATG 3 cut(s) 363, 399, 1348
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 439
FbaI TGATCA 1 cut(s) 1252
Fnu4HI GCNGC 8 cut(s) 190, 433, 513, 516, 519, 546, 631, 759
FokI GGATG 3 cut(s) 284, 360, 439
Fsp4HI GCNGC 8 cut(s) 190, 433, 513, 516, 519, 546, 631, 759
FspBI CTAG 3 cut(s) 417, 1148, 1319
GluI GCNGC 8 cut(s) 190, 433, 513, 516, 519, 546, 631, 759
GsuI CTGGAG 2 cut(s) 1084, 1220
HaeIII GGCC 2 cut(s) 216, 488
HapII CCGG 1 cut(s) 269
HgaI GACGC 2 cut(s) 305, 385
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 367, 403, 1352
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 7 cut(s) 317, 404, 656, 980, 1106, 1335, 1355
HpaII CCGG 1 cut(s) 269
HphI GGTGA 3 cut(s) 304, 539, 656
Hpy166II GTNNAC 5 cut(s) 151, 235, 603, 1051, 1283
Hpy188I TCNGA 3 cut(s) 141, 619, 834
Hpy188III TCNNGA 9 cut(s) 12, 210, 424, 608, 1101, 1199, 1250, 1349, 1379
Hpy8I GTNNAC 5 cut(s) 151, 235, 603, 1051, 1283
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 167, 1355
HpyCH4III ACNGT 6 cut(s) 203, 652, 689, 838, 865, 1287
HpyCH4IV ACGT 1 cut(s) 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 369, 518, 636
HpyF3I CTNAG 5 cut(s) 422, 576, 707, 1364, 1503
HpySE526I ACGT 1 cut(s) 560
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 367, 403, 1352
Ksp22I TGATCA 1 cut(s) 1252
Kzo9I GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
LmnI GCTCC 1 cut(s) 1188
Lsp1109I GCAGC 6 cut(s) 201, 444, 524, 532, 642, 745
LweI GCATC 2 cut(s) 721, 1399
MabI ACCWGGT 1 cut(s) 949
MaeI CTAG 3 cut(s) 417, 1148, 1319
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 5 cut(s) 48, 116, 366, 644, 713
MalI GATC 6 cut(s) 531, 612, 1254, 1269, 1383, 1467
MboI GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
MfeI CAATTG 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 87, 605
MlyI GAGTC 3 cut(s) 326, 974, 1329
MmeI TCCRAC 2 cut(s) 597, 1269
Mph1103I ATGCAT 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 1215
MseI TTAA 3 cut(s) 1089, 1131, 1458
MspA1I CMGCKG 2 cut(s) 192, 711
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 792, 951
MunI CAATTG 1 cut(s) 358
MvaI CCWGG 2 cut(s) 792, 951
MwoI GCNNNNNNNGC 4 cut(s) 189, 369, 518, 636
NdeI CATATG 1 cut(s) 439
NdeII GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
NlaIII CATG 3 cut(s) 367, 403, 1352
NlaIV GGNNCC 1 cut(s) 1184
NmuCI GTSAC 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 208
PagI TCATGA 1 cut(s) 1348
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 4 cut(s) 404, 656, 1106, 1355
PflFI GACNNNGTC 1 cut(s) 249
PkrI GCNGC 8 cut(s) 191, 434, 514, 517, 520, 547, 632, 760
PleI GAGTC 3 cut(s) 325, 974, 1329
PpsI GAGTC 3 cut(s) 325, 974, 1329
Psp6I CCWGG 2 cut(s) 790, 949
PspGI CCWGG 2 cut(s) 790, 949
PspN4I GGNNCC 1 cut(s) 1184
PspPI GGNCC 1 cut(s) 834
PstI CTGCAG 2 cut(s) 550, 632
PsyI GACNNNGTC 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 711
RsaI GTAC 2 cut(s) 67, 353
RsaNI GTAC 2 cut(s) 66, 352
Rsr2I CGGWCCG 1 cut(s) 834
RsrII CGGWCCG 1 cut(s) 834
SaqAI TTAA 3 cut(s) 1089, 1131, 1458
SatI GCNGC 8 cut(s) 190, 433, 513, 516, 519, 546, 631, 759
Sau3AI GATC 6 cut(s) 529, 610, 1252, 1267, 1381, 1465
Sau96I GGNCC 1 cut(s) 834
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 3 cut(s) 326, 974, 1329
ScrFI CCNGG 2 cut(s) 792, 951
SduI GDGCHC 2 cut(s) 87, 605
SexAI ACCWGGT 1 cut(s) 949
SfaNI GCATC 2 cut(s) 721, 1399
SfcI CTRYAG 2 cut(s) 546, 628
Sfr274I CTCGAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 834
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 4 cut(s) 177, 208, 536, 718
SmoI CTYRAG 4 cut(s) 177, 208, 536, 718
SsiI CCGC 3 cut(s) 192, 516, 519
SspI AATATT 2 cut(s) 24, 1399
SspMI CTAG 3 cut(s) 417, 1148, 1319
StyD4I CCNGG 2 cut(s) 790, 949
StyI CCWWGG 1 cut(s) 1186
TaaI ACNGT 6 cut(s) 203, 652, 689, 838, 865, 1287
TaiI ACGT 1 cut(s) 563
TaqI TCGA 6 cut(s) 209, 581, 972, 1168, 1464, 1489
TatI WGTACW 1 cut(s) 65
TauI GCSGC 2 cut(s) 518, 521
TfiI GAWTC 4 cut(s) 404, 656, 1106, 1355
Tru1I TTAA 3 cut(s) 1089, 1131, 1458
Tru9I TTAA 3 cut(s) 1089, 1131, 1458
TscAI CASTG 2 cut(s) 605, 655
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 6 cut(s) 189, 432, 512, 545, 630, 758
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 6 cut(s) 741, 1035, 1224, 1337, 1365, 1433
TspGWI ACGGA 2 cut(s) 350, 476
TspRI CASTG 2 cut(s) 605, 655
Tth111I GACNNNGTC 1 cut(s) 249
VneI GTGCAC 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 834
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 4 cut(s) 826, 1127, 1171, 1299
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 1492
XhoI CTCGAG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 1215
XspI CTAG 3 cut(s) 417, 1148, 1319
ZrmI AGTACT 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.