Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

715560 .. 719322

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTAATGATAAAATTACCAACACCGGGAGGAATTCTGCGAGTGGAGATCGGAAGTAGCACGACAATGTTCACTCACGATAGCAAGAGCAAAGGGCTACAACGAGATACTCTCGACAAACCTGATGATGCAAGGGAGGACCTGAAACCAGAGAAACAACCAGGAAAGAAAAAGAAAACGGCAGCGAAGCCATCGAGACCCGACTCCGCAGAACCACCGAACATGGAAAGTATATCCCACGCGCCGGCAGAGTCATCATCTTCCTCTGCTTCTTCAACACAACACAAGATTTGGATGGAGGCCCAGGATGAGCTGAAGCAAAAACTAATTGCACAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAAAGCGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAAAGGAACACCCATCTATGGCATGTGGGACTCTTGTGGTTTTGGACATTCATTCCCTCCAAGTTGTTTATGAAGATTACTCCGTTGTCACCCTCAGTGTTCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTTCTATCCACAGCTGCTAATGGTAGATGGAAATGGAATTCTTCATCCTCGAGGCAAGTCCTTTGACACAAATCCTTGTTTTGGCTTGGCTTGTCATCTTGGCATTCTAGCAAATCTACCTACCATTGGGATTGGAAAAAATCTACATCATGTGGATGGTCTAACATTATCCGGTGTGAGGCAACTTCTTAAAGCCAAAGAAGACTGTGCTGAAGATTTTATTAATTTGACAGGACGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGACGGCTCCGTGAAGCCTATATTTATTTCAATTGGTCACCGAATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGACTTGCAAGTATCGTGTGCCAGAGCCTATCCGGCAGGCTGATATCAGATCTAGAGAATATCTTCGGAAGCATCAAGCGATGATCTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

353

Amino Acids

38.93

Weight (kDa)

8.79

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	127 - 337	2.2e-61	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	666
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	33, 654, 933
AcuI	CTGAAG	2 cut(s)	335, 849
AfiI	CCNNNNNNNGG	6 cut(s)	26, 244, 451, 698, 743, 795
AgsI	TTSAA	4 cut(s)	276, 403, 435, 921
AjnI	CCWGG	3 cut(s)	160, 303, 544
AluBI	AGCT	4 cut(s)	313, 359, 586, 631
AluI	AGCT	4 cut(s)	313, 359, 586, 631
Alw26I	GTCTC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	2 cut(s)	300, 567
ApeKI	GCWGC	2 cut(s)	182, 631
ApoI	RAATTY	3 cut(s)	33, 654, 933
AseI	ATTAAT	1 cut(s)	840
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	139, 301, 568
AsuC2I	CCSGG	2 cut(s)	27, 572
AsuHPI	GGTGA	2 cut(s)	514, 920
AvaI	CYCGRG	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	194, 618
BccI	CCATC	6 cut(s)	199, 289, 454, 638, 767, 959
BceAI	ACGGC	2 cut(s)	195, 910
BciT130I	CCWGG	3 cut(s)	162, 305, 546
BcnI	CCSGG	2 cut(s)	27, 572
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	725, 1020
BfmI	CTRYAG	1 cut(s)	888
BglI	GCCNNNNNGGC	1 cut(s)	1000
BglII	AGATCT	2 cut(s)	884, 1016
BisI	GCNGC	2 cut(s)	183, 632
BlsI	GCNGC	2 cut(s)	184, 633
Bme1390I	CCNGG	5 cut(s)	27, 162, 305, 546, 572
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	666
BmgT120I	GGNCC	3 cut(s)	139, 301, 568
BmiI	GGNNCC	2 cut(s)	570, 898
BmrFI	CCNGG	5 cut(s)	27, 162, 305, 546, 572
BmsI	GCATC	2 cut(s)	118, 1048
BpiI	GAAGAC	1 cut(s)	825
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu10I	CCTNAGC	1 cut(s)	856
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	27, 572
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	303, 347, 570
BsaWI	WCCGGW	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 244, 451, 698, 743, 795
Bse118I	RCCGGY	2 cut(s)	244, 605
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	3 cut(s)	162, 305, 546
BseDI	CCNNGG	3 cut(s)	303, 347, 570
BseGI	GGATG	4 cut(s)	300, 313, 661, 778
BseLI	CCNNNNNNNGG	6 cut(s)	26, 244, 451, 698, 743, 795
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	2 cut(s)	541, 870
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	194, 618
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	302, 569
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	6 cut(s)	26, 245, 572, 606, 789, 1000
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	6 cut(s)	26, 244, 451, 698, 743, 795
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	2 cut(s)	557, 720
BsnI	GGCC	2 cut(s)	302, 569
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	666
Bsp143I	GATC	5 cut(s)	48, 353, 884, 1016, 1050
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	302, 569
BspCNI	CTCAG	2 cut(s)	540, 869
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	570, 898
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	885
BsrFI	RCCGGY	2 cut(s)	244, 605
BssAI	RCCGGY	2 cut(s)	244, 605
BssECI	CCNNGG	3 cut(s)	303, 347, 570
BssMI	GATC	5 cut(s)	48, 353, 884, 1016, 1050
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	3 cut(s)	162, 305, 546
Bst4CI	ACNGT	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	246, 1005
BstDEI	CTNAG	2 cut(s)	527, 856
BstDSI	CCRYGG	1 cut(s)	347
BstEII	GGTNACC	1 cut(s)	926
BstF5I	GGATG	4 cut(s)	300, 313, 661, 778
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	5 cut(s)	51, 356, 887, 1019, 1053
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	5 cut(s)	48, 353, 884, 1016, 1050
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 583, 1000
BstNI	CCWGG	3 cut(s)	162, 305, 546
BstNSI	RCATGY	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	926
BstSCI	CCNGG	5 cut(s)	25, 160, 303, 544, 570
BstSFI	CTRYAG	1 cut(s)	888
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	194, 618
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	2 cut(s)	884, 1016
BstYI	RGATCY	2 cut(s)	884, 1016
BsuRI	GGCC	2 cut(s)	302, 569
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	4 cut(s)	300, 313, 661, 778
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	246, 1005
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	2 cut(s)	244, 605
Cfr13I	GGNCC	3 cut(s)	139, 301, 568
CseI	GACGC	1 cut(s)	861
CviAII	CATG	4 cut(s)	223, 348, 456, 767
DdeI	CTNAG	2 cut(s)	527, 856
DpnI	GATC	5 cut(s)	50, 355, 886, 1018, 1052
DpnII	GATC	5 cut(s)	48, 353, 884, 1016, 1050
DraI	TTTAAA	1 cut(s)	1057
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	335, 849
Eco88I	CYCGRG	1 cut(s)	666
Eco91I	GGTNACC	1 cut(s)	926
EcoO109I	RGGNCCY	2 cut(s)	139, 568
EcoO65I	GGTNACC	1 cut(s)	926
EcoRI	GAATTC	2 cut(s)	33, 654
EcoRII	CCWGG	3 cut(s)	160, 303, 544
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	226, 351, 459, 770
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	222, 347, 455, 766
Fnu4HI	GCNGC	2 cut(s)	183, 632
FokI	GGATG	4 cut(s)	307, 320, 648, 785
Fsp4HI	GCNGC	2 cut(s)	183, 632
FspBI	CTAG	2 cut(s)	725, 1020
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	183, 632
HaeIII	GGCC	2 cut(s)	302, 569
HapII	CCGG	6 cut(s)	26, 245, 572, 606, 789, 1000
HgaI	GACGC	1 cut(s)	861
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	226, 351, 459, 770
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	203, 251, 463
HpaII	CCGG	6 cut(s)	26, 245, 572, 606, 789, 1000
HphI	GGTGA	2 cut(s)	514, 920
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	4 cut(s)	53, 563, 1016, 1035
Hpy188III	TCNNGA	5 cut(s)	77, 113, 195, 581, 1020
Hpy8I	GTNNAC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4V	TGCA	5 cut(s)	131, 332, 368, 557, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 583, 1000
HpyF3I	CTNAG	2 cut(s)	527, 856
Hsp92II	CATG	4 cut(s)	226, 351, 459, 770
HspAI	GCGC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	48, 353, 884, 1016, 1050
LmnI	GCTCC	1 cut(s)	902
Lsp1109I	GCAGC	2 cut(s)	194, 618
LweI	GCATC	2 cut(s)	118, 1048
MaeI	CTAG	2 cut(s)	725, 1020
MaeIII	GTNAC	3 cut(s)	380, 520, 926
MalI	GATC	5 cut(s)	50, 355, 886, 1018, 1052
MboI	GATC	5 cut(s)	48, 353, 884, 1016, 1050
MboII	GAAGA	8 cut(s)	252, 264, 518, 607, 650, 830, 842, 1022
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	2 cut(s)	884, 1016
MluCI	AATT	8 cut(s)	14, 33, 327, 654, 841, 921, 933, 957
MlyI	GAGTC	3 cut(s)	197, 260, 457
MroNI	GCCGGC	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	1029
MseI	TTAA	3 cut(s)	807, 840, 1056
MslI	CAYNNNNRTG	2 cut(s)	65, 771
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	6 cut(s)	26, 245, 572, 606, 789, 1000
MspR9I	CCNGG	5 cut(s)	27, 162, 305, 546, 572
MunI	CAATTG	1 cut(s)	921
Mva1269I	GAATGC	2 cut(s)	557, 720
MvaI	CCWGG	3 cut(s)	162, 305, 546
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	365, 583, 1000
NaeI	GCCGGC	1 cut(s)	246
NciI	CCSGG	2 cut(s)	27, 572
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	5 cut(s)	48, 353, 884, 1016, 1050
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	4 cut(s)	226, 351, 459, 770
NlaIV	GGNNCC	2 cut(s)	570, 898
NmuCI	GTSAC	3 cut(s)	380, 520, 926
NspI	RCATGY	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PctI	GAATGC	2 cut(s)	557, 720
PdiI	GCCGGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	1029
PkrI	GCNGC	2 cut(s)	184, 633
PleI	GAGTC	3 cut(s)	197, 259, 457
PpsI	GAGTC	3 cut(s)	197, 259, 457
PpuMI	RGGWCCY	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	160, 303, 544
PspEI	GGTNACC	1 cut(s)	926
PspGI	CCWGG	3 cut(s)	160, 303, 544
PspN4I	GGNNCC	2 cut(s)	570, 898
PspPI	GGNCC	3 cut(s)	139, 301, 568
PspPPI	RGGWCCY	1 cut(s)	139
PspXI	VCTCGAGB	1 cut(s)	666
PsuI	RGATCY	2 cut(s)	884, 1016
PvuII	CAGCTG	1 cut(s)	631
RseI	CAYNNNNRTG	2 cut(s)	65, 771
SaqAI	TTAA	3 cut(s)	807, 840, 1056
SatI	GCNGC	2 cut(s)	183, 632
Sau3AI	GATC	5 cut(s)	48, 353, 884, 1016, 1050
Sau96I	GGNCC	3 cut(s)	139, 301, 568
SchI	GAGTC	3 cut(s)	197, 260, 457
ScrFI	CCNGG	5 cut(s)	27, 162, 305, 546, 572
SetI	ASST	7 cut(s)	124, 144, 315, 361, 588, 633, 739
SfaNI	GCATC	2 cut(s)	118, 1048
SfcI	CTRYAG	1 cut(s)	888
Sfr274I	CTCGAG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	65, 771
SmlI	CTYRAG	2 cut(s)	581, 666
SmoI	CTYRAG	2 cut(s)	581, 666
Sse9I	AATT	8 cut(s)	14, 33, 327, 654, 841, 921, 933, 957
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	2 cut(s)	725, 1020
StyD4I	CCNGG	5 cut(s)	25, 160, 303, 544, 570
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	824
TaqI	TCGA	3 cut(s)	114, 194, 667
TasI	AATT	8 cut(s)	14, 33, 327, 654, 841, 921, 933, 957
Tru1I	TTAA	3 cut(s)	807, 840, 1056
Tru9I	TTAA	3 cut(s)	807, 840, 1056
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	3 cut(s)	380, 520, 926
TseI	GCWGC	2 cut(s)	182, 631
Tsp45I	GTSAC	3 cut(s)	380, 520, 926
TspDTI	ATGAA	4 cut(s)	473, 519, 614, 650
TspGWI	ACGGA	2 cut(s)	505, 889
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	840
XapI	RAATTY	3 cut(s)	33, 654, 933
XbaI	TCTAGA	1 cut(s)	1019
XceI	RCATGY	1 cut(s)	459
XhoI	CTCGAG	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	2 cut(s)	725, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.