Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

23647825 .. 23651000

Gene Structure 3176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAAGTATATCCCACGCGCCGGCAGAGTCATCATCATCTGCTGCCTCTTCAACACAACACAACATTTGGATAGAGGCCCAAGATGAGCTGAAGCAGAAACTAATTGCACAAGATGATTTCCCATGGAGATTAGCTACTACTGCACCCACACTTCATCAGGAGAAGGAGATTGCGTTGAAGTATGTGGGTGGGGCTGATATAAGCTATTCAAAACAAGACCCATCAATGGCATGTGGGACTCTTGTAGTCTTGGACATTCATACCCTCCAAGTTGTTTATGAAGATCACTCTGTTGTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCTTTCAGAGAGGCCCCAGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCAGTGCTACTCTTTTTTATCCACAGCTGCTAATGGTAGATGGAAATGGAATACTTCATCCTCGAGGTTTTGGCTTGGCTTGTCATCTTGGCATTCTAGCAAATCTACCTACCATTGGGATTGGAAAAAATCTTCATCATGTGGATGGTCTAACATTATCTGGCGTGAGGCAACTTCTTAAAGCCAAAGAAGACTGTGCTGAAGATTTTGTTACTTTGACAGGGTGCTCAGGGCGTACATGGGGAGTGGCAATGAGATCTACAGACGGCTGTGTGAAGCCTATATTTATTTCAATTGGTCACCGCATTTCGCTTGATACTGCTGTCAAAATTGTAAAAATGACTTGCAAGTATCGCATGCCAGAGCCTATCCGGCAGGCTGATATCAGATCAAGAGAATCTCTTCGGAAGCATCAAGCAATGATCTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

272

Amino Acids

29.76

Weight (kDa)

7.16

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	53 - 255	4.7e-66	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	444
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	685
AcuI	CTGAAG	2 cut(s)	113, 603
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	3 cut(s)	22, 229, 497
AgsI	TTSAA	4 cut(s)	54, 181, 213, 675
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	91, 137, 207, 364, 409
AluI	AGCT	5 cut(s)	91, 137, 207, 364, 409
Alw21I	GWGCWC	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	78, 345
ApeKI	GCWGC	2 cut(s)	44, 409
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	79, 346
AsuHPI	GGTGA	2 cut(s)	292, 674
AvaI	CYCGRG	1 cut(s)	444
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	2 cut(s)	31, 396
BccI	CCATC	3 cut(s)	232, 416, 521
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	754
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	2 cut(s)	45, 410
BlsI	GCNGC	2 cut(s)	46, 411
Bme1390I	CCNGG	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	79, 346
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 229, 497
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	350, 384
Bse3DI	GCAATG	2 cut(s)	639, 807
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	439, 532
BseLI	CCNNNNNNNGG	3 cut(s)	22, 229, 497
BseMI	GCAATG	2 cut(s)	639, 807
BseMII	CTCAG	2 cut(s)	319, 624
BseNI	ACTGG	2 cut(s)	350, 384
BseXI	GCAGC	2 cut(s)	31, 396
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	80, 347
BsiHKAI	GWGCWC	1 cut(s)	611
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	23, 754
BslFI	GGGAC	2 cut(s)	253, 296
BslI	CCNNNNNNNGG	3 cut(s)	22, 229, 497
BsmFI	GGGAC	2 cut(s)	253, 296
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	80, 347
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	4 cut(s)	286, 638, 770, 804
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	2 cut(s)	80, 347
BspCNI	CTCAG	2 cut(s)	318, 623
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	639, 807
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	350, 384
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	4 cut(s)	286, 638, 770, 804
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	2 cut(s)	55, 789
BstC8I	GCNNGC	3 cut(s)	24, 740, 759
BstDEI	CTNAG	2 cut(s)	305, 610
BstDSI	CCRYGG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	2 cut(s)	439, 532
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	4 cut(s)	289, 641, 773, 807
BstMBI	GATC	4 cut(s)	286, 638, 770, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 361, 735, 754
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	237, 742
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	31, 396
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	80, 347
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	439, 532
BtsIMutI	CAGTG	3 cut(s)	313, 357, 391
Cac8I	GCNNGC	3 cut(s)	24, 740, 759
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	79, 346
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	5 cut(s)	126, 234, 521, 621, 739
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	2 cut(s)	305, 610
DpnI	GATC	4 cut(s)	288, 640, 772, 806
DpnII	GATC	4 cut(s)	286, 638, 770, 804
Eam1104I	CTCTTC	2 cut(s)	55, 789
EarI	CTCTTC	2 cut(s)	55, 789
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	113, 603
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	5 cut(s)	129, 237, 524, 624, 742
FaqI	GGGAC	2 cut(s)	253, 296
FatI	CATG	5 cut(s)	125, 233, 520, 620, 738
Fnu4HI	GCNGC	2 cut(s)	45, 410
FokI	GGATG	2 cut(s)	426, 539
Fsp4HI	GCNGC	2 cut(s)	45, 410
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	2 cut(s)	45, 410
HaeIII	GGCC	2 cut(s)	80, 347
HapII	CCGG	2 cut(s)	23, 754
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	129, 237, 524, 624, 742
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	3 cut(s)	29, 241, 779
HpaII	CCGG	2 cut(s)	23, 754
HphI	GGTGA	2 cut(s)	292, 674
Hpy188I	TCNGA	3 cut(s)	341, 770, 789
Hpy188III	TCNNGA	3 cut(s)	161, 359, 774
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4V	TGCA	3 cut(s)	110, 146, 729
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 361, 735, 754
HpyF3I	CTNAG	2 cut(s)	305, 610
Hsp92II	CATG	5 cut(s)	129, 237, 524, 624, 742
HspAI	GCGC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	286, 638, 770, 804
Lsp1109I	GCAGC	2 cut(s)	31, 396
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	298, 592, 680
MalI	GATC	4 cut(s)	288, 640, 772, 806
MboI	GATC	4 cut(s)	286, 638, 770, 804
MboII	GAAGA	7 cut(s)	42, 296, 385, 506, 584, 596, 776
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	3 cut(s)	105, 675, 711
MlyI	GAGTC	2 cut(s)	38, 235
MnlI	CCTC	8 cut(s)	58, 70, 278, 314, 337, 440, 453, 543
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	2 cut(s)	23, 754
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	143, 361, 735, 754
NaeI	GCCGGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	286, 638, 770, 804
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	129, 237, 524, 624, 742
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	298, 680
NspI	RCATGY	2 cut(s)	237, 742
PaeI	GCATGC	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	444
PctI	GAATGC	1 cut(s)	474
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	2 cut(s)	46, 411
PleI	GAGTC	2 cut(s)	37, 235
PpsI	GAGTC	2 cut(s)	37, 235
Psp6I	CCWGG	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	79, 346
PspXI	VCTCGAGB	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	45, 410
Sau3AI	GATC	4 cut(s)	286, 638, 770, 804
Sau96I	GGNCC	2 cut(s)	79, 346
SchI	GAGTC	2 cut(s)	38, 235
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	611
SetI	ASST	7 cut(s)	93, 139, 209, 366, 411, 451, 493
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	359, 444
SmoI	CTYRAG	2 cut(s)	359, 444
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	3 cut(s)	105, 675, 711
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	578
TaqI	TCGA	1 cut(s)	445
TasI	AATT	3 cut(s)	105, 675, 711
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	313, 357, 391
TseFI	GTSAC	2 cut(s)	298, 680
TseI	GCWGC	2 cut(s)	44, 409
Tsp45I	GTSAC	2 cut(s)	298, 680
TspDTI	ATGAA	6 cut(s)	146, 251, 297, 392, 428, 506
TspRI	CASTG	3 cut(s)	313, 357, 391
XceI	RCATGY	2 cut(s)	237, 742
XhoI	CTCGAG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.