Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

52405487 .. 52423586

Gene Structure 18100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGACTTTAGAGGGAGTAGCGGCTTTCTTGGCAATGGAGGAATGATATTCCACCCCATCGTTCTTGGTACGAGTAGTACTGGGCAGAGGTTCTCCGTTAAGAAACCCAAATCAAAGACTCCAGCAAAGAAGCCCAAATACGGTGTTCTTGAGCAGAGACGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGGCGGCTGCGTGAAGCCTATATTTATTTCAATTGGTCACCGCATTTCGCTTGATACTGCCATCAAAATTGTAAAACTTACTTGCAAGTATCGTGTCATCGTGTGCCAGAGCCTATCCGGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

107

Amino Acids

11.67

Weight (kDa)

11.09

Isoelectric Point (pI)

16.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	43 - 97	1.4e-10	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	309
AciI	CCGC	3 cut(s)	21, 201, 238
AfaI	GTAC	2 cut(s)	70, 79
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	65, 266
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	315
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	3 cut(s)	22, 202, 205
BlsI	GCNGC	3 cut(s)	23, 203, 206
BmcAI	AGTACT	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	2 cut(s)	40, 192
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	2 cut(s)	40, 192
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	151
BsmBI	CGTCTC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	3 cut(s)	21, 201, 238
BspCNI	CTCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	309
BsrDI	GCAATG	2 cut(s)	40, 192
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	163
BstEII	GGTNACC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 315
BstPI	GGTNACC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	309
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	69, 78
CviJI	RGCY	5 cut(s)	24, 133, 204, 214, 309
CviKI_1	RGCY	5 cut(s)	24, 133, 204, 214, 309
CviQI	GTAC	2 cut(s)	69, 78
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	151
FaiI	YATR	3 cut(s)	173, 175, 218
Fnu4HI	GCNGC	3 cut(s)	22, 202, 205
Fsp4HI	GCNGC	3 cut(s)	22, 202, 205
GluI	GCNGC	3 cut(s)	22, 202, 205
GsuI	CTGGAG	1 cut(s)	105
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 315
HpyF3I	CTNAG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	191
LpnPI	CCDG	6 cut(s)	66, 135, 150, 183, 304, 317
Lsp1109I	GCAGC	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	2 cut(s)	228, 264
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	5, 32, 81
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	30, 315
NdeII	GATC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	23, 203, 206
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspEI	GGTNACC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	70, 79
RsaNI	GTAC	2 cut(s)	69, 78
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	22, 202, 205
Sau3AI	GATC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	112
SetI	ASST	2 cut(s)	92, 323
SfcI	CTRYAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	228, 264
SsiI	CCGC	3 cut(s)	21, 201, 238
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	2 cut(s)	228, 264
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	2 cut(s)	24, 204
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	85
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.