Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

664789 .. 666178

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAAGCCGGTTTTGGCTTGGCTTGTCATCTTGGCATTCTAGCAAATCTACCTACTATTGAGATTGGAAATAATCTTCATTATGTGGATGGTCTAACACTATCCGGCGTGAGGCAACTTCTTAAAGCCAAAGAAGACTGTGCTGAAGATTTTATTACTTTGACAGGATGCTCAGGGCGTATATGGGGAGTGGCAATGAGGTCTACAGACGGCTGCTTGAAGCCTATATTTATTTCAATTGGTGACCGCATTTCGCTTGATACTGCCGTCAAAATTGTAAAAATGACTTGCAAGTATCGTGTGCCAGAGTCTATCCGGCAGGTTGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

111

Amino Acids

11.89

Weight (kDa)

8.68

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	4 - 107	8.9e-23	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	220, 237
ApeKI	GCWGC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	254
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	226, 251
BfaI	CTAG	2 cut(s)	41, 331
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	94, 173
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	9, 105, 316
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	94, 173
BstPI	GGTNACC	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	94, 173
BveI	ACCTGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	8
CviJI	RGCY	7 cut(s)	8, 18, 23, 128, 213, 223, 330
CviKI_1	RGCY	7 cut(s)	8, 18, 23, 128, 213, 223, 330
DdeI	CTNAG	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
FaiI	YATR	4 cut(s)	84, 182, 184, 227
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	101, 180
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	2 cut(s)	41, 331
GluI	GCNGC	1 cut(s)	214
HapII	CCGG	3 cut(s)	9, 105, 316
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	3 cut(s)	9, 105, 316
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	22, 118, 150, 159, 305, 318, 329
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	41, 331
MaeIII	GTNAC	1 cut(s)	242
MboII	GAAGA	3 cut(s)	68, 146, 158
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	2 cut(s)	237, 273
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	2 cut(s)	105, 192
MseI	TTAA	1 cut(s)	123
MspI	CCGG	3 cut(s)	9, 105, 316
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	317
SetI	ASST	3 cut(s)	55, 203, 324
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	237, 273
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	41, 331
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	2 cut(s)	237, 273
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	17, 68
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	2 cut(s)	41, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.