Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

68298878 .. 68301371

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG529500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAAGTATATCCCACGCGCCGGCAGAGTCATCATCTTCCTCTGCTTCTTCAACACAGCACAAGATTTGGATGGAGGCCCAAGATGAGCTGAAGCAAAAACTAATTGCACAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAAAGCGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAAAGGAACACCCATCTATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATTCCCTCCAAGTTGTTTATGAAGATTACTCCGTTGTCACCCTCAGTGTTCCTTATGTTTCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTTCTATCCACAGCTGCTAATGGTAGATGGAAATGGAATACTTCATCCTCGAGGTTTTGGCTTGGCTTGTCATCTAGGCATTCTTGCAAATCTACCTACTATTGGGATTGGAAAAAATCTTCATCATGTGGATGGTCTAACATTATCCGGTGTGAGGCAACTTTTTAAAGCCCAAGAAGACTCTGCTGAAGATTTTATTAATTTGACAGGACGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGACGGCTCCGTGAAGCCTATATTTATTTCAATTGGTCACCGAATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGACTTGCAAGTATCGTGTGCCAGAGCCTATCCGGCAGGCTGATATCAGATCTAGAGAATATCTTCGGAAGCATCAAGTGATGATCTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

271

Amino Acids

29.98

Weight (kDa)

7.16

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	53 - 255	9.8e-66	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	444
AccII	CGCG	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	687
AcuI	CTGAAG	2 cut(s)	113, 603
AfiI	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
AgsI	TTSAA	4 cut(s)	54, 181, 213, 675
AluBI	AGCT	4 cut(s)	91, 137, 364, 409
AluI	AGCT	4 cut(s)	91, 137, 364, 409
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	78, 345
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	687
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	79, 346
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	292, 674
AvaI	CYCGRG	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	5 cut(s)	67, 232, 416, 521, 713
BceAI	ACGGC	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	2 cut(s)	470, 774
BfmI	CTRYAG	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	754
BglII	AGATCT	2 cut(s)	638, 770
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	79, 346
BmiI	GGNNCC	2 cut(s)	348, 652
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	125, 348
BsaWI	WCCGGW	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
Bse118I	RCCGGY	2 cut(s)	22, 383
Bse3DI	GCAATG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	125, 348
BseGI	GGATG	3 cut(s)	78, 439, 532
BseLI	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	319, 624
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	80, 347
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	5 cut(s)	23, 350, 384, 543, 754
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	2 cut(s)	335, 474
BsnI	GGCC	2 cut(s)	80, 347
BsoBI	CYCGRG	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	131, 638, 770, 804
Bsp19I	CCATGG	1 cut(s)	125
BspANI	GGCC	2 cut(s)	80, 347
BspCNI	CTCAG	2 cut(s)	318, 623
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	348, 652
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	2 cut(s)	22, 383
BssAI	RCCGGY	2 cut(s)	22, 383
BssECI	CCNNGG	2 cut(s)	125, 348
BssMI	GATC	4 cut(s)	131, 638, 770, 804
BssT1I	CCWWGG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	24, 759
BstDEI	CTNAG	2 cut(s)	305, 610
BstDSI	CCRYGG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	78, 439, 532
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	4 cut(s)	134, 641, 773, 807
BstMBI	GATC	4 cut(s)	131, 638, 770, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 361, 754
BstNSI	RCATGY	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	2 cut(s)	638, 770
BstYI	RGATCY	2 cut(s)	638, 770
BsuRI	GGCC	2 cut(s)	80, 347
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	3 cut(s)	78, 439, 532
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	24, 759
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	2 cut(s)	22, 383
Cfr13I	GGNCC	2 cut(s)	79, 346
CseI	GACGC	1 cut(s)	615
CviAII	CATG	3 cut(s)	126, 234, 521
DdeI	CTNAG	2 cut(s)	305, 610
DpnI	GATC	4 cut(s)	133, 640, 772, 806
DpnII	GATC	4 cut(s)	131, 638, 770, 804
DraI	TTTAAA	2 cut(s)	562, 811
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	113, 603
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	129, 237, 524
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	125, 233, 520
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	3 cut(s)	85, 426, 539
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	2 cut(s)	470, 774
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	80, 347
HapII	CCGG	5 cut(s)	23, 350, 384, 543, 754
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	129, 237, 524
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	3 cut(s)	29, 241, 575
HpaII	CCGG	5 cut(s)	23, 350, 384, 543, 754
HphI	GGTGA	2 cut(s)	292, 674
Hpy188I	TCNGA	3 cut(s)	341, 770, 789
Hpy188III	TCNNGA	2 cut(s)	359, 774
HpyCH4V	TGCA	5 cut(s)	110, 146, 335, 482, 729
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 361, 754
HpyF3I	CTNAG	2 cut(s)	305, 610
Hsp92II	CATG	3 cut(s)	129, 237, 524
HspAI	GCGC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	131, 638, 770, 804
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	2 cut(s)	470, 774
MaeIII	GTNAC	3 cut(s)	158, 298, 680
MalI	GATC	4 cut(s)	133, 640, 772, 806
MboI	GATC	4 cut(s)	131, 638, 770, 804
MboII	GAAGA	8 cut(s)	30, 42, 296, 385, 506, 584, 596, 776
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	638, 770
MluCI	AATT	5 cut(s)	105, 595, 675, 687, 711
MlyI	GAGTC	3 cut(s)	38, 235, 569
MnlI	CCTC	9 cut(s)	52, 70, 160, 278, 314, 337, 440, 453, 543
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	3 cut(s)	561, 594, 810
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	5 cut(s)	23, 350, 384, 543, 754
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	2 cut(s)	335, 474
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	143, 361, 754
NaeI	GCCGGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	131, 638, 770, 804
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	129, 237, 524
NlaIV	GGNNCC	2 cut(s)	348, 652
NmuCI	GTSAC	3 cut(s)	158, 298, 680
NspI	RCATGY	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	2 cut(s)	335, 474
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	783
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	3 cut(s)	37, 235, 569
PpsI	GAGTC	3 cut(s)	37, 235, 569
PshBI	ATTAAT	1 cut(s)	594
PspEI	GGTNACC	1 cut(s)	680
PspN4I	GGNNCC	2 cut(s)	348, 652
PspPI	GGNCC	2 cut(s)	79, 346
PspXI	VCTCGAGB	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	638, 770
PvuII	CAGCTG	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	561, 594, 810
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	4 cut(s)	131, 638, 770, 804
Sau96I	GGNCC	2 cut(s)	79, 346
SchI	GAGTC	3 cut(s)	38, 235, 569
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	6 cut(s)	93, 139, 366, 411, 451, 493
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	359, 444
SmoI	CTYRAG	2 cut(s)	359, 444
Sse9I	AATT	5 cut(s)	105, 595, 675, 687, 711
SspMI	CTAG	2 cut(s)	470, 774
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	445
TasI	AATT	5 cut(s)	105, 595, 675, 687, 711
Tru1I	TTAA	3 cut(s)	561, 594, 810
Tru9I	TTAA	3 cut(s)	561, 594, 810
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	3 cut(s)	158, 298, 680
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	3 cut(s)	158, 298, 680
TspDTI	ATGAA	5 cut(s)	251, 297, 392, 428, 506
TspGWI	ACGGA	2 cut(s)	283, 643
TspRI	CASTG	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	1 cut(s)	687
XbaI	TCTAGA	1 cut(s)	773
XceI	RCATGY	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	2 cut(s)	470, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.