Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

69090873 .. 69093102

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28112

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATACCCTCCAAGTTGTTTACGAAGATTACTCTGTTCTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTCCTATCCACTTCTTCATCATGTGGATGGTCTAACACTATCTGGCGTGAGGCAACTTCTTAAAGCCAAAAAAGACTGTGCTGAAGATTTTATTACTTTGACAGGATGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGACGGCTGCTTGAAGCCTATATTTATTTCAATTGGTGACCGCATTTCGCTTGATACTGCCATCAAAATTGTAAAAATGACTTGCAAGTATCGTGTGCCAGAGTCTATCCGGCAGGCTGATATCAGATCTAGAGAATATCTTCGGAAGCATCAAGGGAAGATCTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

160

Amino Acids

17.91

Weight (kDa)

9.11

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	3 - 54	1.3e-14	Endonuclease V
Endonuclease_5	PF04493	77 - 144	2.6e-15	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	325, 342
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	64, 359
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	188, 380
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	3 cut(s)	305, 437, 471
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	96, 122
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	96, 122
BmsI	GCATC	2 cut(s)	263, 469
Bpu10I	CCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	199, 278
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	91, 291
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	122, 156, 421
BslFI	GGGAC	2 cut(s)	25, 68
BsmFI	GGGAC	2 cut(s)	25, 68
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	305, 437, 471
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	90, 290
BspLI	GGNNCC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	305, 437, 471
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	77, 277
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	199, 278
BstKTI	GATC	3 cut(s)	308, 440, 474
BstMBI	GATC	3 cut(s)	305, 437, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	94, 120
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	3 cut(s)	305, 437, 471
BstYI	RGATCY	3 cut(s)	305, 437, 471
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	199, 278
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	2 cut(s)	6, 188
CviJI	RGCY	8 cut(s)	99, 119, 136, 155, 233, 318, 328, 428
CviKI_1	RGCY	8 cut(s)	99, 119, 136, 155, 233, 318, 328, 428
DdeI	CTNAG	2 cut(s)	77, 277
DpnI	GATC	3 cut(s)	307, 439, 473
DpnII	GATC	3 cut(s)	305, 437, 471
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	2 cut(s)	9, 191
FaiI	YATR	8 cut(s)	7, 36, 90, 189, 287, 289, 332, 477
FaqI	GGGAC	2 cut(s)	25, 68
FatI	CATG	2 cut(s)	5, 187
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	2 cut(s)	206, 285
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	3 cut(s)	122, 156, 421
Hin1II	CATG	2 cut(s)	9, 191
HinfI	GANTC	2 cut(s)	13, 413
HpaII	CCGG	3 cut(s)	122, 156, 421
HphI	GGTGA	2 cut(s)	64, 359
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	113, 437, 456
Hpy188III	TCNNGA	2 cut(s)	131, 441
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	107, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	2 cut(s)	77, 277
Hsp92II	CATG	2 cut(s)	9, 191
Kzo9I	GATC	3 cut(s)	305, 437, 471
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	2 cut(s)	263, 469
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	307, 439, 473
MboI	GATC	3 cut(s)	305, 437, 471
MboII	GAAGA	6 cut(s)	68, 157, 173, 263, 443, 481
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	3 cut(s)	305, 437, 471
MluCI	AATT	2 cut(s)	342, 378
MlyI	GAGTC	2 cut(s)	7, 422
MnlI	CCTC	4 cut(s)	50, 86, 109, 210
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	3 cut(s)	122, 156, 421
MspR9I	CCNGG	2 cut(s)	96, 122
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	3 cut(s)	305, 437, 471
NlaIII	CATG	2 cut(s)	9, 191
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	9
PctI	GAATGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	2 cut(s)	7, 421
PpsI	GAGTC	2 cut(s)	7, 421
Psp6I	CCWGG	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	3 cut(s)	305, 437, 471
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	305, 437, 471
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	7, 422
ScrFI	CCNGG	2 cut(s)	96, 122
SetI	ASST	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	263, 469
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	342, 378
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	94, 120
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	2 cut(s)	342, 378
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	23, 164, 173
TspRI	CASTG	1 cut(s)	85
XbaI	TCTAGA	1 cut(s)	440
XceI	RCATGY	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.