Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

67740438 .. 67742966

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAAAGTATATCCCACGCGCCGGCGGAGTCATCATCTTCTTCTGCTTCTTCAACACAACACAAGATTTGGATGGAGGCCCAAGATGAGCTGAAGCAAAAACTAATTGCACAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACTCACAAGTGACCAAGAGGAGAAAGCGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAAAGGAACACCCATCTATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATTCCCTCCAAGTTGTTTACGAAGATTACTCTGTTCTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTCCTATCCACGTTTTGACCATCTTGGCATTCTAGCAAATCTACCTACTATTGAGATTGGAAATAATCTTCATCATGTGGATGGTCTAACACTATCTGGCGTGAGGCAACTTCTTAAAGCCAAAGAAGACTGTGCTGAAGATTTTATTACTTTGACAGGATGCTCAGGGCGCAATTCAATGAGATCTACAGACGGCTGCTTGAAGCCTATATTTATTTCAATTGGTGACCGCATTTCGCTTGATACTGCCATCAAAATTGTAAAAATGACTTGCAAGTATCGTGTGCCAGAGTCTATCCGGCAGGCTGATATCAGATCTATAGAATATCTTCGGAAGCATCAAGCGATGATCTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

251

Amino Acids

27.87

Weight (kDa)

6.07

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	53 - 129	1.9e-21	Endonuclease V
Endonuclease_5	PF04493	139 - 235	3.4e-15	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	26, 625
AcuI	CTGAAG	2 cut(s)	113, 552
AfiI	CCNNNNNNNGG	2 cut(s)	22, 229
AgsI	TTSAA	6 cut(s)	54, 181, 213, 573, 598, 615
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	3 cut(s)	91, 137, 364
AluI	AGCT	3 cut(s)	91, 137, 364
AoxI	GGCC	2 cut(s)	78, 345
ApeKI	GCWGC	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	22, 567
AspS9I	GGNCC	2 cut(s)	79, 346
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	292, 632
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	5 cut(s)	67, 232, 423, 470, 653
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	2 cut(s)	582, 714
BglII	AGATCT	2 cut(s)	578, 710
BisI	GCNGC	1 cut(s)	592
BlsI	GCNGC	1 cut(s)	593
Bme1390I	CCNGG	2 cut(s)	324, 350
BmgT120I	GGNCC	2 cut(s)	79, 346
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	324, 350
BmsI	GCATC	2 cut(s)	545, 742
BpiI	GAAGAC	1 cut(s)	528
Bpu10I	CCTNAGC	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	125, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 229
Bse118I	RCCGGY	2 cut(s)	22, 383
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	125, 348
BseGI	GGATG	3 cut(s)	78, 481, 560
BseLI	CCNNNNNNNGG	2 cut(s)	22, 229
BseMII	CTCAG	2 cut(s)	319, 573
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	80, 347
BsiSI	CCGG	4 cut(s)	23, 350, 384, 694
BslFI	GGGAC	2 cut(s)	253, 296
BslI	CCNNNNNNNGG	2 cut(s)	22, 229
BsmFI	GGGAC	2 cut(s)	253, 296
BsmI	GAATGC	2 cut(s)	335, 423
BsnI	GGCC	2 cut(s)	80, 347
Bsp143I	GATC	4 cut(s)	131, 578, 710, 744
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	2 cut(s)	26, 625
BspANI	GGCC	2 cut(s)	80, 347
BspCNI	CTCAG	2 cut(s)	318, 572
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	348
BsrFI	RCCGGY	2 cut(s)	22, 383
BssAI	RCCGGY	2 cut(s)	22, 383
BssECI	CCNNGG	2 cut(s)	125, 348
BssMI	GATC	4 cut(s)	131, 578, 710, 744
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	24, 699
BstDEI	CTNAG	2 cut(s)	305, 559
BstDSI	CCRYGG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	3 cut(s)	78, 481, 560
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	22, 567
BstKTI	GATC	4 cut(s)	134, 581, 713, 747
BstMBI	GATC	4 cut(s)	131, 578, 710, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 361, 564
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	322, 348
BstSFI	CTRYAG	2 cut(s)	582, 714
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	2 cut(s)	578, 710
BstYI	RGATCY	2 cut(s)	578, 710
BsuRI	GGCC	2 cut(s)	80, 347
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	3 cut(s)	78, 481, 560
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	24, 699
CfoI	GCGC	2 cut(s)	22, 567
Cfr10I	RCCGGY	2 cut(s)	22, 383
Cfr13I	GGNCC	2 cut(s)	79, 346
CviAII	CATG	3 cut(s)	126, 234, 470
DdeI	CTNAG	2 cut(s)	305, 559
DpnI	GATC	4 cut(s)	133, 580, 712, 746
DpnII	GATC	4 cut(s)	131, 578, 710, 744
DraI	TTTAAA	1 cut(s)	751
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	706
Eco57I	CTGAAG	2 cut(s)	113, 552
Eco91I	GGTNACC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	129, 237, 473
FaqI	GGGAC	2 cut(s)	253, 296
FatI	CATG	3 cut(s)	125, 233, 469
Fnu4HI	GCNGC	1 cut(s)	592
FokI	GGATG	3 cut(s)	85, 488, 567
Fsp4HI	GCNGC	1 cut(s)	592
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	2 cut(s)	21, 566
GluI	GCNGC	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	80, 347
HapII	CCGG	4 cut(s)	23, 350, 384, 694
HhaI	GCGC	2 cut(s)	22, 567
Hin1II	CATG	3 cut(s)	129, 237, 473
Hin6I	GCGC	2 cut(s)	20, 565
HinP1I	GCGC	2 cut(s)	20, 565
HinfI	GANTC	3 cut(s)	29, 241, 686
HpaII	CCGG	4 cut(s)	23, 350, 384, 694
HphI	GGTGA	2 cut(s)	292, 632
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	341, 710, 729
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	110, 146, 335, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 361, 564
HpyF3I	CTNAG	2 cut(s)	305, 559
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	129, 237, 473
HspAI	GCGC	2 cut(s)	20, 565
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	131, 578, 710, 744
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	2 cut(s)	545, 742
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	158, 620
MalI	GATC	4 cut(s)	133, 580, 712, 746
MboI	GATC	4 cut(s)	131, 578, 710, 744
MboII	GAAGA	9 cut(s)	30, 33, 42, 296, 385, 455, 533, 545, 716
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	2 cut(s)	578, 710
MluCI	AATT	4 cut(s)	105, 568, 615, 651
MlyI	GAGTC	3 cut(s)	38, 235, 695
MnlI	CCTC	6 cut(s)	70, 160, 278, 314, 337, 492
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	2 cut(s)	510, 750
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	4 cut(s)	23, 350, 384, 694
MspR9I	CCNGG	2 cut(s)	324, 350
MunI	CAATTG	1 cut(s)	615
Mva1269I	GAATGC	2 cut(s)	335, 423
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	143, 361, 564
NaeI	GCCGGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	131, 578, 710, 744
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	129, 237, 473
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	158, 620
NspI	RCATGY	1 cut(s)	237
PctI	GAATGC	2 cut(s)	335, 423
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	723
PkrI	GCNGC	1 cut(s)	593
PleI	GAGTC	3 cut(s)	37, 235, 694
PpsI	GAGTC	3 cut(s)	37, 235, 694
Psp6I	CCWGG	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	79, 346
PsuI	RGATCY	2 cut(s)	578, 710
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	510, 750
SatI	GCNGC	1 cut(s)	592
Sau3AI	GATC	4 cut(s)	131, 578, 710, 744
Sau96I	GGNCC	2 cut(s)	79, 346
SchI	GAGTC	3 cut(s)	38, 235, 695
ScrFI	CCNGG	2 cut(s)	324, 350
SetI	ASST	5 cut(s)	93, 139, 366, 409, 442
SfaNI	GCATC	2 cut(s)	545, 742
SfcI	CTRYAG	2 cut(s)	582, 714
SgrAI	CRCCGGYG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	105, 568, 615, 651
SsiI	CCGC	2 cut(s)	26, 625
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	322, 348
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	1 cut(s)	409
TasI	AATT	4 cut(s)	105, 568, 615, 651
Tru1I	TTAA	2 cut(s)	510, 750
Tru9I	TTAA	2 cut(s)	510, 750
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	158, 620
TseI	GCWGC	1 cut(s)	591
Tsp45I	GTSAC	2 cut(s)	158, 620
TspDTI	ATGAA	3 cut(s)	251, 392, 455
TspRI	CASTG	1 cut(s)	313
XceI	RCATGY	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.