Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

67710243 .. 67712733

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAAGAATACCCCACGCACCGGCAGAGTCATCATCTTCCTCTGCTTCTTCAACACAACACAAGATTTGGATGGAGGCCCAAGATGAGCTGAAGCAAAAACTAATTGCACAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAAAGCGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAAAGGAACACCCATCTATGGCGTGTGGGACTCTTGTAGTTTTGGACATTCGTTCCCTCCAAGTTGTTTATGAAGATTACTCTGTTCTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTTCTATCCACAGCTGCTAATGGTAGATGGAAATGGAATACTTCATCCTCGAGGTTTTGGCTTGGCTTGTCATCTTGGCATTCTAGCAAATCTACCTACTATTGGGATTGGAAAAAATCTTCATCATGTGGATGGTCTAACATTATCCGGTGTGAGGCAACTTCTTAAAGCCAAAGAAGATTGTGCTGAAGATTTTATTAATTTGACAGGACGCTCAGGGCGCATATGGGGAGTGGCAATGAGATCTACAGACAGCTCCGTGAAGCCTATATTTATTTCAATTGGTCACCGAATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGAATTGCAAGTATCGTGTGCCAGAGCCTATCCGGCAGGCTGATATCAGATCTAGAGAATATCTTCGGAAGCATCAAGCGATGATCTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

271

Amino Acids

30.09

Weight (kDa)

8.59

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	53 - 255	2.3e-65	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	687
AcuI	CTGAAG	2 cut(s)	113, 603
AfiI	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
AgsI	TTSAA	4 cut(s)	54, 181, 213, 675
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	91, 137, 364, 409, 651
AluI	AGCT	5 cut(s)	91, 137, 364, 409, 651
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	78, 345
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	687
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	79, 346
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	292, 674
AvaI	CYCGRG	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	5 cut(s)	67, 232, 416, 521, 713
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	2 cut(s)	479, 774
BfmI	CTRYAG	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	754
BglII	AGATCT	2 cut(s)	638, 770
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	324, 350
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	79, 346
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	324, 350
BmsI	GCATC	1 cut(s)	802
Bpu10I	CCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	125, 348
BsaWI	WCCGGW	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
Bse118I	RCCGGY	2 cut(s)	22, 383
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	125, 348
BseGI	GGATG	3 cut(s)	78, 439, 532
BseLI	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	319, 624
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	80, 347
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	5 cut(s)	23, 350, 384, 543, 754
BslFI	GGGAC	2 cut(s)	253, 296
BslI	CCNNNNNNNGG	4 cut(s)	22, 229, 497, 549
BsmFI	GGGAC	2 cut(s)	253, 296
BsmI	GAATGC	2 cut(s)	335, 474
BsnI	GGCC	2 cut(s)	80, 347
BsoBI	CYCGRG	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	131, 638, 770, 804
Bsp19I	CCATGG	1 cut(s)	125
BspANI	GGCC	2 cut(s)	80, 347
BspCNI	CTCAG	2 cut(s)	318, 623
BspLI	GGNNCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	2 cut(s)	22, 383
BssAI	RCCGGY	2 cut(s)	22, 383
BssECI	CCNNGG	2 cut(s)	125, 348
BssMI	GATC	4 cut(s)	131, 638, 770, 804
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	2 cut(s)	305, 610
BstDSI	CCRYGG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	78, 439, 532
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	4 cut(s)	134, 641, 773, 807
BstMBI	GATC	4 cut(s)	131, 638, 770, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 361, 615, 754
BstNI	CCWGG	1 cut(s)	324
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	322, 348
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	638, 770
BstYI	RGATCY	2 cut(s)	638, 770
BsuRI	GGCC	2 cut(s)	80, 347
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	3 cut(s)	78, 439, 532
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	759
CfoI	GCGC	1 cut(s)	618
Cfr10I	RCCGGY	2 cut(s)	22, 383
Cfr13I	GGNCC	2 cut(s)	79, 346
CseI	GACGC	1 cut(s)	615
CviAII	CATG	2 cut(s)	126, 521
DdeI	CTNAG	2 cut(s)	305, 610
DpnI	GATC	4 cut(s)	133, 640, 772, 806
DpnII	GATC	4 cut(s)	131, 638, 770, 804
DraI	TTTAAA	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	113, 603
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	129, 524
FaqI	GGGAC	2 cut(s)	253, 296
FatI	CATG	2 cut(s)	125, 520
FauNDI	CATATG	1 cut(s)	620
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	3 cut(s)	85, 426, 539
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	2 cut(s)	479, 774
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	80, 347
HapII	CCGG	5 cut(s)	23, 350, 384, 543, 754
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	2 cut(s)	129, 524
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HinfI	GANTC	2 cut(s)	29, 241
HpaII	CCGG	5 cut(s)	23, 350, 384, 543, 754
HphI	GGTGA	2 cut(s)	292, 674
Hpy188I	TCNGA	3 cut(s)	341, 770, 789
Hpy188III	TCNNGA	2 cut(s)	359, 774
HpyCH4V	TGCA	4 cut(s)	110, 146, 335, 729
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 361, 615, 754
HpyF3I	CTNAG	2 cut(s)	305, 610
Hsp92II	CATG	2 cut(s)	129, 524
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	131, 638, 770, 804
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	2 cut(s)	479, 774
MaeIII	GTNAC	2 cut(s)	158, 680
MalI	GATC	4 cut(s)	133, 640, 772, 806
MboI	GATC	4 cut(s)	131, 638, 770, 804
MboII	GAAGA	8 cut(s)	30, 42, 296, 385, 506, 584, 596, 776
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	638, 770
MluCI	AATT	6 cut(s)	105, 595, 675, 687, 711, 724
MlyI	GAGTC	2 cut(s)	38, 235
MnlI	CCTC	9 cut(s)	52, 70, 160, 278, 314, 337, 440, 453, 543
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	3 cut(s)	561, 594, 810
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	5 cut(s)	23, 350, 384, 543, 754
MspR9I	CCNGG	2 cut(s)	324, 350
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	2 cut(s)	335, 474
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	143, 361, 615, 754
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	620
NdeII	GATC	4 cut(s)	131, 638, 770, 804
NlaIII	CATG	2 cut(s)	129, 524
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	158, 680
PaeR7I	CTCGAG	1 cut(s)	444
PctI	GAATGC	2 cut(s)	335, 474
PdmI	GAANNNNTTC	1 cut(s)	783
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	2 cut(s)	37, 235
PpsI	GAGTC	2 cut(s)	37, 235
PshBI	ATTAAT	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	79, 346
PspXI	VCTCGAGB	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	638, 770
PvuII	CAGCTG	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	561, 594, 810
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	4 cut(s)	131, 638, 770, 804
Sau96I	GGNCC	2 cut(s)	79, 346
SchI	GAGTC	2 cut(s)	38, 235
ScrFI	CCNGG	2 cut(s)	324, 350
SetI	ASST	7 cut(s)	93, 139, 366, 411, 451, 493, 653
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	359, 444
SmoI	CTYRAG	2 cut(s)	359, 444
Sse9I	AATT	6 cut(s)	105, 595, 675, 687, 711, 724
SspMI	CTAG	2 cut(s)	479, 774
StyD4I	CCNGG	2 cut(s)	322, 348
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	445
TasI	AATT	6 cut(s)	105, 595, 675, 687, 711, 724
Tru1I	TTAA	3 cut(s)	561, 594, 810
Tru9I	TTAA	3 cut(s)	561, 594, 810
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	158, 680
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	2 cut(s)	158, 680
TspDTI	ATGAA	4 cut(s)	297, 392, 428, 506
TspGWI	ACGGA	1 cut(s)	643
TspRI	CASTG	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	1 cut(s)	687
XbaI	TCTAGA	1 cut(s)	773
XhoI	CTCGAG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	2 cut(s)	479, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.