Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

54109178 .. 54110056

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0395800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATGATTCATCCTCCTCCTTCTTGCTTAAAGATCTTGATCAAGAGAGAAATGGCCATTACAAGCTTCAGCTGCAGCCTTAACCAGCTGCCTCCTCCAACTCAAAGCTCAGGCCCTTTTCCCCCGTCAAAGACGAATCAAGTACTACTTGCATGTGATGGAGGATCATGGAGTAGCAGATGTGTTCTGGGCATGACTTGTGTTATGGTTGGGTTGGAGATGGGTGGTTTTGTGAGTTGCCAAAGCCATGAAGCTATAGCTAAAGGTATGCCGTTGGTGATGGAGTCAAGTGAGAAAGTTGTGAAATGGAGTGACAAGAGAATTTGCCCAAAGTGGAGAGCCAATGAGCTGGAGACCATTGTGCCGGAGAACCTTCCCAGGCCGTCGGCTCATCGGAGATGGGAAATCGTCGGTTTTACTACTAGGGATGCTCCGGCGGTTAAAATGGTAGCTAGGAGGAGTACTGGTGGTTGCTTTTCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

161

Amino Acids

17.68

Weight (kDa)

9.18

Isoelectric Point (pI)

71.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	144, 463
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	8 cut(s)	66, 72, 88, 108, 254, 260, 349, 452
AluI	AGCT	8 cut(s)	66, 72, 88, 108, 254, 260, 349, 452
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	54, 112, 380
ApeKI	GCWGC	3 cut(s)	72, 75, 88
ApoI	RAATTY	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	59, 75, 87
BccI	CCATC	4 cut(s)	152, 214, 274, 393
BceAI	ACGGC	2 cut(s)	256, 367
BciT130I	CCWGG	1 cut(s)	379
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	423, 453
BfmI	CTRYAG	2 cut(s)	73, 255
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	3 cut(s)	73, 76, 89
BlsI	GCNGC	3 cut(s)	74, 77, 90
BmcAI	AGTACT	2 cut(s)	144, 463
Bme1390I	CCNGG	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	10, 433
BseJI	GATNNNNATC	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	3 cut(s)	6, 84, 472
BseXI	GCAGC	3 cut(s)	59, 75, 87
BshFI	GGCC	3 cut(s)	56, 114, 382
BsiSI	CCGG	2 cut(s)	365, 434
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	56, 114, 382
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	33, 39, 164
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	3 cut(s)	56, 114, 382
BspCNI	CTCAG	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	3 cut(s)	33, 39, 164
Bst2UI	CCWGG	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	10, 433
BstKTI	GATC	3 cut(s)	36, 42, 167
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	33, 39, 164
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	2 cut(s)	73, 255
BstV1I	GCAGC	3 cut(s)	59, 75, 87
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	3 cut(s)	56, 114, 382
BtsCI	GGATG	2 cut(s)	10, 433
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	143, 462
CviAII	CATG	4 cut(s)	153, 168, 193, 248
CviQI	GTAC	2 cut(s)	143, 462
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	3 cut(s)	35, 41, 166
DpnII	GATC	3 cut(s)	33, 39, 164
EaeI	YGGCCR	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	377
FaeI	CATG	4 cut(s)	156, 171, 196, 251
FaiI	YATR	8 cut(s)	154, 169, 194, 206, 249, 257, 269, 482
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	4 cut(s)	152, 167, 192, 247
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	73, 76, 89
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	73, 76, 89
FspBI	CTAG	2 cut(s)	423, 453
GluI	GCNGC	3 cut(s)	73, 76, 89
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	56, 114, 382
HapII	CCGG	2 cut(s)	365, 434
Hin1II	CATG	4 cut(s)	156, 171, 196, 251
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	3 cut(s)	7, 136, 284
HpaII	CCGG	2 cut(s)	365, 434
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	2 cut(s)	37, 43
Hpy99I	CGWCG	2 cut(s)	388, 413
HpyAV	CCTTC	2 cut(s)	30, 383
HpyCH4V	TGCA	2 cut(s)	75, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	156, 171, 196, 251
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	33, 39, 164
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	9 cut(s)	96, 98, 173, 335, 364, 378, 391, 447, 450
Lsp1109I	GCAGC	3 cut(s)	59, 75, 87
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	423, 453
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	35, 41, 166
MboI	GATC	3 cut(s)	33, 39, 164
MflI	RGATCY	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	122, 195
MnlI	CCTC	6 cut(s)	24, 27, 102, 105, 155, 450
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	3 cut(s)	29, 81, 441
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	72, 88
MspI	CCGG	2 cut(s)	365, 434
MspR9I	CCNGG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	3 cut(s)	33, 39, 164
NlaIII	CATG	4 cut(s)	156, 171, 196, 251
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	7, 136
PkrI	GCNGC	3 cut(s)	74, 77, 90
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	2 cut(s)	72, 88
RsaI	GTAC	2 cut(s)	144, 463
RsaNI	GTAC	2 cut(s)	143, 462
SaqAI	TTAA	3 cut(s)	29, 81, 441
SatI	GCNGC	3 cut(s)	73, 76, 89
Sau3AI	GATC	3 cut(s)	33, 39, 164
Sau96I	GGNCC	1 cut(s)	113
ScaI	AGTACT	2 cut(s)	144, 463
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	73, 255
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	2 cut(s)	423, 453
StyD4I	CCNGG	1 cut(s)	377
TasI	AATT	1 cut(s)	321
TatI	WGTACW	2 cut(s)	142, 461
TfiI	GAWTC	2 cut(s)	7, 136
Tru1I	TTAA	3 cut(s)	29, 81, 441
Tru9I	TTAA	3 cut(s)	29, 81, 441
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	72, 75, 88
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	2 cut(s)	423, 453
ZrmI	AGTACT	2 cut(s)	144, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.