Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

19165982 .. 19170652

Gene Structure 4671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCAATGGTAATTCTGGAAAGTCCGCCAACACAGAGGACGTACTCCAAAGCTCCCAAGGCTTGCTGGAGCCTTATTCATTTTCATGGAGGATCGGAGTCGCGTAAGATCTTCAAGCTGAACTATCCTGATTCAAAATCTGCTGTGAGTTTTGGAGCAGACCTGAAAGCTGCAATGAGATCTACAGGCGGCTGCGTGAAGCCTATATTTATTTCAATTGGTCACCGCATTTCGCTTGATACTGCCATCAAAATTGTAAAACTTACTTGCAAGTATCGTGTCATCGTGTGCCGAGCCTATCCGGCAGCTTCTCCATGGTCTCGGGTTGAAGCACGAGGAACGAGTTTTGATGGTCGATGGCTTCTTTCATCCGAGGTGATTCGCAACCTCGCTCTCTACAAACACGGTATGAAATCTCTTCAATCCCTTGCTGCAAAGAAAAACCGCAATCACATAAGAAATAAAGAAATCACAATCCCTAATTCAAAAATAGAGGGTAGGTTATACATACTAACACACCCCGACGGAGGTGAGGAAGACGACGAAGACGCCGAGGCCGACGAGGCCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

190

Amino Acids

21.16

Weight (kDa)

9.47

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	52 - 93	1.5e-07	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	4 cut(s)	26, 189, 226, 445
AclWI	GGATC	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	6 cut(s)	115, 135, 216, 329, 422, 486
AluBI	AGCT	4 cut(s)	53, 118, 170, 308
AluI	AGCT	4 cut(s)	53, 118, 170, 308
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	555, 564
ApeKI	GCWGC	4 cut(s)	170, 192, 305, 431
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	215, 388, 542
AvaI	CYCGRG	1 cut(s)	321
BauI	CACGAG	1 cut(s)	333
BbsI	GAAGAC	2 cut(s)	543, 552
BbvI	GCAGC	4 cut(s)	157, 179, 317, 418
BccI	CCATC	3 cut(s)	254, 344, 351
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	183
BglI	GCCNNNNNGGC	2 cut(s)	302, 563
BglII	AGATCT	2 cut(s)	108, 179
BisI	GCNGC	5 cut(s)	171, 190, 193, 306, 432
BlsI	GCNGC	5 cut(s)	172, 191, 194, 307, 433
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	543, 552
BpmI	CTGGAG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	4 cut(s)	57, 314, 372, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	12, 180
BseDI	CCNNGG	4 cut(s)	57, 314, 372, 552
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	2 cut(s)	12, 180
BseXI	GCAGC	4 cut(s)	157, 179, 317, 418
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	557, 566
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	557, 566
Bso31I	GGTCTC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	92, 108, 179
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	26, 189, 226, 445
BspANI	GGCC	2 cut(s)	557, 566
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	12, 180
BssECI	CCNNGG	4 cut(s)	57, 314, 372, 552
BssMI	GATC	3 cut(s)	92, 108, 179
BssNI	GRCGYC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	57, 314
Bst2BI	CACGAG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	95, 111, 182
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	3 cut(s)	92, 108, 179
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 302, 563
BstPI	GGTNACC	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	157, 179, 317, 418
BstV2I	GAAGAC	2 cut(s)	543, 552
BstX2I	RGATCY	2 cut(s)	108, 179
BstYI	RGATCY	2 cut(s)	108, 179
BsuRI	GGCC	2 cut(s)	557, 566
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	86, 315
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	3 cut(s)	94, 110, 181
DpnII	GATC	3 cut(s)	92, 108, 179
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	57, 314
Eco31I	GGTCTC	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	57, 314
ErhI	CCWWGG	2 cut(s)	57, 314
FaeI	CATG	2 cut(s)	89, 318
FaiI	YATR	7 cut(s)	87, 206, 316, 410, 455, 505, 509
FatI	CATG	2 cut(s)	85, 314
Fnu4HI	GCNGC	5 cut(s)	171, 190, 193, 306, 432
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	5 cut(s)	171, 190, 193, 306, 432
GluI	GCNGC	5 cut(s)	171, 190, 193, 306, 432
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	557, 566
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	2 cut(s)	89, 318
HinfI	GANTC	3 cut(s)	98, 131, 379
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	215, 388, 542
Hpy188I	TCNGA	2 cut(s)	97, 373
Hpy188III	TCNNGA	2 cut(s)	17, 128
Hpy99I	CGWCG	3 cut(s)	527, 545, 563
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	173, 270, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 302, 563
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	89, 318
Kzo9I	GATC	3 cut(s)	92, 108, 179
LmnI	GCTCC	3 cut(s)	58, 69, 155
LpnPI	CCDG	6 cut(s)	2, 52, 141, 171, 176, 315
Lsp1109I	GCAGC	4 cut(s)	157, 179, 317, 418
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	94, 110, 181
MboI	GATC	3 cut(s)	92, 108, 179
MboII	GAAGA	4 cut(s)	103, 410, 548, 557
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	108, 179
MluCI	AATT	4 cut(s)	12, 216, 252, 481
MlyI	GAGTC	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	59, 302, 563
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	92, 108, 179
NlaIII	CATG	2 cut(s)	89, 318
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	549, 555
PfeI	GAWTC	2 cut(s)	131, 379
PkrI	GCNGC	5 cut(s)	172, 191, 194, 307, 433
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	108, 179
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	5 cut(s)	171, 190, 193, 306, 432
Sau3AI	GATC	3 cut(s)	92, 108, 179
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	183
SfiI	GGCCNNNNNGGCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	4 cut(s)	12, 216, 252, 481
SsiI	CCGC	4 cut(s)	26, 189, 226, 445
StyI	CCWWGG	2 cut(s)	57, 314
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	355
TasI	AATT	4 cut(s)	12, 216, 252, 481
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	131, 379
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	4 cut(s)	170, 192, 305, 431
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	68, 74, 357, 425
TspGWI	ACGGA	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.