Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

67791050 .. 67794203

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAAGTATATCCCACGCGCCGGCAGAGTCATCATCTTCTTCTGCTTCTTCAACACAACACAAGATTTGGATGGAGGCCCAAGAGGAGCTGAAGCAAAAACTAATTGCACAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAAAGCGTTGAGGAACACCCATATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATACCCTCCAAGTTGTTTATGAAGATTACTCTGTTCTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTCTCTATCCACGTTTTGGCTTGGCTTGTCATCTAGGCATTCTAGCAAATCTACCTACTATTGAGATTGGAAATAATCTTCATCATGTGGATGGTCTAACACTATATATCTGGCGTGAGATCTACAGACGGCTGCGTAAGCCTATATTTATTTCAATTGGTAAGCGCATTTTGCTTGATACTGCCATCAAAATTGTAAAAATGACTTGCAAGTATCGTGTGCCAGAGTCTATCCGGCAGGCTGGCACAAAAGGCTTACCTCTAAGGTACTTCACTGTCAAATGCCTTGATGTTTTGTTGTATTTCTATATCCATCTTAGAATGCATACAAATTCATCAGAAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

235

Amino Acids

26.67

Weight (kDa)

8.81

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	30 - 200	4.7e-31	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccII	CGCG	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	22, 374
AgsI	TTSAA	2 cut(s)	54, 513
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	91, 137, 328, 704
AluI	AGCT	4 cut(s)	91, 137, 328, 704
AoxI	GGCC	2 cut(s)	78, 309
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	1 cut(s)	688
AspLEI	GCGC	2 cut(s)	22, 525
AspS9I	GGNCC	2 cut(s)	79, 310
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	4 cut(s)	67, 443, 551, 678
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	314
BfaI	CTAG	2 cut(s)	392, 401
BfmI	CTRYAG	1 cut(s)	481
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	2 cut(s)	288, 314
BmgT120I	GGNCC	2 cut(s)	79, 310
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	288, 314
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	125, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 374
Bse118I	RCCGGY	2 cut(s)	22, 347
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	125, 312
BseGI	GGATG	2 cut(s)	78, 454
BseLI	CCNNNNNNNGG	2 cut(s)	22, 374
BseMII	CTCAG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	101, 182
BseXI	GCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	80, 311
BsiSI	CCGG	4 cut(s)	23, 314, 348, 592
BslFI	GGGAC	2 cut(s)	217, 260
BslI	CCNNNNNNNGG	2 cut(s)	22, 374
BsmFI	GGGAC	2 cut(s)	217, 260
BsmI	GAATGC	3 cut(s)	299, 396, 684
BsnI	GGCC	2 cut(s)	80, 311
Bsp143I	GATC	2 cut(s)	131, 477
Bsp19I	CCATGG	1 cut(s)	125
BspANI	GGCC	2 cut(s)	80, 311
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	312
BsrFI	RCCGGY	2 cut(s)	22, 347
BssAI	RCCGGY	2 cut(s)	22, 347
BssECI	CCNNGG	2 cut(s)	125, 312
BssMI	GATC	2 cut(s)	131, 477
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	634
BstC8I	GCNNGC	3 cut(s)	24, 597, 601
BstDEI	CTNAG	3 cut(s)	269, 620, 674
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	78, 454
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	22, 525
BstKTI	GATC	2 cut(s)	134, 480
BstMBI	GATC	2 cut(s)	131, 477
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 325, 496, 529, 609
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	286, 312
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	80, 311
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	78, 454
BtsIMutI	CAGTG	2 cut(s)	277, 630
Cac8I	GCNNGC	3 cut(s)	24, 597, 601
CfoI	GCGC	2 cut(s)	22, 525
Cfr10I	RCCGGY	2 cut(s)	22, 347
Cfr13I	GGNCC	2 cut(s)	79, 310
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	3 cut(s)	126, 198, 443
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	3 cut(s)	269, 620, 674
DpnI	GATC	2 cut(s)	133, 479
DpnII	GATC	2 cut(s)	131, 477
Eco130I	CCWWGG	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	129, 201, 446
FaqI	GGGAC	2 cut(s)	217, 260
FatI	CATG	3 cut(s)	125, 197, 442
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	2 cut(s)	85, 461
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	2 cut(s)	392, 401
GlaI	GCGC	2 cut(s)	21, 524
GluI	GCNGC	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	80, 311
HapII	CCGG	4 cut(s)	23, 314, 348, 592
HhaI	GCGC	2 cut(s)	22, 525
Hin1II	CATG	3 cut(s)	129, 201, 446
Hin6I	GCGC	2 cut(s)	20, 523
HinP1I	GCGC	2 cut(s)	20, 523
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	3 cut(s)	29, 205, 584
HpaII	CCGG	4 cut(s)	23, 314, 348, 592
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	305, 697
Hpy188III	TCNNGA	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	110, 146, 299, 567, 682
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 325, 496, 529, 609
HpyF3I	CTNAG	3 cut(s)	269, 620, 674
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	129, 201, 446
HspAI	GCGC	2 cut(s)	20, 523
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	131, 477
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	392, 401
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	133, 479
MboI	GATC	2 cut(s)	131, 477
MboII	GAAGA	7 cut(s)	30, 33, 42, 260, 349, 350, 428
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	4 cut(s)	105, 513, 549, 688
MlyI	GAGTC	3 cut(s)	38, 199, 593
MnlI	CCTC	8 cut(s)	70, 79, 160, 174, 242, 278, 301, 627
Mph1103I	ATGCAT	1 cut(s)	684
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	1 cut(s)	706
MslI	CAYNNNNRTG	2 cut(s)	191, 447
MspI	CCGG	4 cut(s)	23, 314, 348, 592
MspR9I	CCNGG	2 cut(s)	288, 314
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	3 cut(s)	299, 396, 684
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	5 cut(s)	143, 325, 496, 529, 609
NaeI	GCCGGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	2 cut(s)	131, 477
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	129, 201, 446
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	1 cut(s)	201
PctI	GAATGC	3 cut(s)	299, 396, 684
PdiI	GCCGGC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	3 cut(s)	37, 199, 592
PpsI	GAGTC	3 cut(s)	37, 199, 592
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	79, 310
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	191, 447
SaqAI	TTAA	1 cut(s)	706
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	2 cut(s)	131, 477
Sau96I	GGNCC	2 cut(s)	79, 310
SchI	GAGTC	3 cut(s)	38, 199, 593
ScrFI	CCNGG	2 cut(s)	288, 314
SetI	ASST	8 cut(s)	93, 139, 330, 373, 415, 619, 626, 706
SfcI	CTRYAG	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	191, 447
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	105, 513, 549, 688
SspMI	CTAG	2 cut(s)	392, 401
StyD4I	CCNGG	2 cut(s)	286, 312
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	1 cut(s)	373
TasI	AATT	4 cut(s)	105, 513, 549, 688
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	2 cut(s)	277, 637
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	215, 261, 356, 428, 681
TspRI	CASTG	2 cut(s)	277, 637
Van91I	CCANNNNNTGG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	688
XceI	RCATGY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	392, 401
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.