Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

85586397 .. 85596148

Gene Structure 9752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAAATGGATTCCTTGTTCATTGTCGATGCTTTATTTGACGCAATGAGATCTACAGGCGGCTGCGTGAAGCCTATATTTATTTCAATTGGTCACCGCATTTCGCTTGATACTGCCATCAAAATTGTAAAACTTACTTGCAAGTATCGTGTCATCGTGTGCCGAGCCTATCCGGCAGGATTGGAGCCTCCAGCAATTGTCAAGGAACCCACCTCGTACGTGTCACCCAGCAGTACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

80

Amino Acids

8.72

Weight (kDa)

8.53

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	15 - 50	1.2e-07	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 97
AfaI	GTAC	2 cut(s)	218, 235
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	87
AloI	GAACNNNNNNTCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	86, 216
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	173
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	2 cut(s)	61, 64
BlsI	GCNGC	2 cut(s)	62, 65
BmiI	GGNNCC	2 cut(s)	186, 207
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	173
BsiWI	CGTACG	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	2 cut(s)	60, 97
BspLI	GGNNCC	2 cut(s)	186, 207
BsrDI	GCAATG	1 cut(s)	51
BssMI	GATC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	243
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	217, 234
CviJI	RGCY	4 cut(s)	63, 73, 167, 187
CviKI_1	RGCY	4 cut(s)	63, 73, 167, 187
CviQI	GTAC	2 cut(s)	217, 234
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
FaiI	YATR	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	61, 64
Fsp4HI	GCNGC	2 cut(s)	61, 64
GluI	GCNGC	2 cut(s)	61, 64
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	174
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	86, 216
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	42, 162, 186, 204
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	92, 222
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MfeI	CAATTG	2 cut(s)	87, 195
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	3 cut(s)	87, 123, 195
MnlI	CCTC	2 cut(s)	198, 223
MspI	CCGG	1 cut(s)	173
MunI	CAATTG	2 cut(s)	87, 195
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	50
NlaIV	GGNNCC	2 cut(s)	186, 207
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	2 cut(s)	92, 222
PfeI	GAWTC	1 cut(s)	11
Pfl23II	CGTACG	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	62, 65
Ppu21I	YACGTR	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	227
PspLI	CGTACG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	186, 207
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	218, 235
RsaNI	GTAC	2 cut(s)	217, 234
SatI	GCNGC	2 cut(s)	61, 64
Sau3AI	GATC	1 cut(s)	50
SetI	ASST	2 cut(s)	215, 222
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	87, 123, 195
SsiI	CCGC	2 cut(s)	60, 97
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	87, 123, 195
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	92, 222
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	2 cut(s)	92, 222
TspDTI	ATGAA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.