Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

708393 .. 710797

Gene Structure 2405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010328

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGGCCCAAGATGAGCTGAAGCAAAAACTAATTGCGCAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAAAGTGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAACGGAACACCCATCTATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATTCCCTCCAAGTTGTTTATGAAGATTACTCTGTTGTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAAGCTTTTCTATCCACAGCTGCTAATGGTAGATGGAAATGGAATACTTCATCCTCGAGGTTTTGGCTTGGCTTGTCATCTTGGCATTCTAGCAAATCTACCTACTATTGGGATTGGAAAAAATCTTCATCATGTGGATGGTCTAACATTATCTGGTGTGAGGCAACTTCTTAAAGCCAAAGACGACTGTGCTGAAGATTTTATTAATTTGACAGGATGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGACGGCTCCGTGAAGCCTATATTTATTTCAATTGGTCACCGAATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGACTTGCAAGTATCGTGTGCCAGAACCTAACCGGCAGGCTGATATCAGATCTAGACAATATCTTCGGAAGCATCAAGCGATGATCTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

248

Amino Acids

27.36

Weight (kDa)

8.22

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	29 - 231	7.2e-65	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	2 cut(s)	41, 531
AfiI	CCNNNNNNNGG	2 cut(s)	157, 425
AgsI	TTSAA	3 cut(s)	109, 141, 603
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	19, 65, 292, 322, 337
AluI	AGCT	5 cut(s)	19, 65, 292, 322, 337
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	2 cut(s)	6, 273
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	615
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	7, 274
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	220, 602
AvaI	CYCGRG	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	4 cut(s)	160, 344, 449, 641
BceAI	ACGGC	1 cut(s)	592
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	278
BfaI	CTAG	2 cut(s)	407, 702
BfmI	CTRYAG	1 cut(s)	570
BglII	AGATCT	2 cut(s)	566, 698
BisI	GCNGC	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	252, 278
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	7, 274
BmiI	GGNNCC	2 cut(s)	276, 580
BmrFI	CCNGG	2 cut(s)	252, 278
BmsI	GCATC	2 cut(s)	524, 730
Bpu10I	CCTNAGC	1 cut(s)	538
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	53, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 425
Bse118I	RCCGGY	2 cut(s)	311, 681
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	53, 276
BseGI	GGATG	3 cut(s)	367, 460, 539
BseLI	CCNNNNNNNGG	2 cut(s)	157, 425
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	247, 552
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	8, 275
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	3 cut(s)	278, 312, 682
BslFI	GGGAC	2 cut(s)	181, 224
BslI	CCNNNNNNNGG	2 cut(s)	157, 425
BsmFI	GGGAC	2 cut(s)	181, 224
BsmI	GAATGC	2 cut(s)	263, 402
BsnI	GGCC	2 cut(s)	8, 275
BsoBI	CYCGRG	1 cut(s)	372
Bsp143I	GATC	4 cut(s)	59, 566, 698, 732
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	8, 275
BspCNI	CTCAG	2 cut(s)	246, 551
BspLI	GGNNCC	2 cut(s)	276, 580
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	2 cut(s)	311, 681
BssAI	RCCGGY	2 cut(s)	311, 681
BssECI	CCNNGG	2 cut(s)	53, 276
BssMI	GATC	4 cut(s)	59, 566, 698, 732
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	233, 318, 538
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	608
BstF5I	GGATG	3 cut(s)	367, 460, 539
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	4 cut(s)	62, 569, 701, 735
BstMBI	GATC	4 cut(s)	59, 566, 698, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 289
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	250, 276
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	566, 698
BstYI	RGATCY	2 cut(s)	566, 698
BsuRI	GGCC	2 cut(s)	8, 275
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	367, 460, 539
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	687
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	311, 681
Cfr13I	GGNCC	2 cut(s)	7, 274
CviAII	CATG	3 cut(s)	54, 162, 449
DdeI	CTNAG	3 cut(s)	233, 318, 538
DpnI	GATC	4 cut(s)	61, 568, 700, 734
DpnII	GATC	4 cut(s)	59, 566, 698, 732
DraI	TTTAAA	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	41, 531
Eco88I	CYCGRG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 165, 452
FaqI	GGGAC	2 cut(s)	181, 224
FatI	CATG	3 cut(s)	53, 161, 448
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	3 cut(s)	354, 467, 546
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	2 cut(s)	407, 702
FspI	TGCGCA	1 cut(s)	39
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	8, 275
HapII	CCGG	3 cut(s)	278, 312, 682
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	57, 165, 452
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	278, 312, 682
HphI	GGTGA	2 cut(s)	220, 602
Hpy188I	TCNGA	3 cut(s)	269, 698, 717
Hpy188III	TCNNGA	2 cut(s)	287, 702
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	74, 263, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 289
HpyF3I	CTNAG	3 cut(s)	233, 318, 538
Hsp92II	CATG	3 cut(s)	57, 165, 452
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	4 cut(s)	59, 566, 698, 732
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	524, 730
MaeI	CTAG	2 cut(s)	407, 702
MaeIII	GTNAC	3 cut(s)	86, 226, 608
MalI	GATC	4 cut(s)	61, 568, 700, 734
MboI	GATC	4 cut(s)	59, 566, 698, 732
MboII	GAAGA	5 cut(s)	224, 313, 434, 524, 704
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	2 cut(s)	566, 698
MluCI	AATT	5 cut(s)	33, 523, 603, 615, 639
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	88, 206, 242, 265, 368, 381, 471
MseI	TTAA	3 cut(s)	489, 522, 738
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	3 cut(s)	278, 312, 682
MspR9I	CCNGG	2 cut(s)	252, 278
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	2 cut(s)	263, 402
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	71, 289
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	59, 566, 698, 732
NlaIII	CATG	3 cut(s)	57, 165, 452
NlaIV	GGNNCC	2 cut(s)	276, 580
NmuCI	GTSAC	3 cut(s)	86, 226, 608
NsbI	TGCGCA	1 cut(s)	39
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	372
PctI	GAATGC	2 cut(s)	263, 402
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	250
PspEI	GGTNACC	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	276, 580
PspPI	GGNCC	2 cut(s)	7, 274
PspXI	VCTCGAGB	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	566, 698
PvuII	CAGCTG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	489, 522, 738
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	4 cut(s)	59, 566, 698, 732
Sau96I	GGNCC	2 cut(s)	7, 274
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	252, 278
SetI	ASST	8 cut(s)	21, 67, 294, 324, 339, 379, 421, 679
SfaNI	GCATC	2 cut(s)	524, 730
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	287, 372
SmoI	CTYRAG	2 cut(s)	287, 372
Sse9I	AATT	5 cut(s)	33, 523, 603, 615, 639
SspMI	CTAG	2 cut(s)	407, 702
StyD4I	CCNGG	2 cut(s)	250, 276
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	33, 523, 603, 615, 639
Tru1I	TTAA	3 cut(s)	489, 522, 738
Tru9I	TTAA	3 cut(s)	489, 522, 738
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	86, 226, 608
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	3 cut(s)	86, 226, 608
TspDTI	ATGAA	5 cut(s)	179, 225, 320, 356, 434
TspGWI	ACGGA	2 cut(s)	158, 571
TspRI	CASTG	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	701
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	2 cut(s)	407, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.