Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008363.1

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Forward (+)

108616 .. 110946

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008363.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgctttgtggcaagacatatgctaatgataaaattacctacaccgggaggaattctctgagtggaaaccaggaagtagcacgacaatgtaactcactcacgatagcaagagcaaagggctgcaacgagatactctcggtaggcgacaaaccttctgtggcagacaaacttgatgacccaagggaggacccggaaccagagaaacaactagaaaagaaaaagaaaaaggcagcgaagccatcgagacccgactccgcagagattcgtccatctcggacgagcagcccgacaaatgagtgctcaaaaactgatgctgagaatgatcactgcataagaccgccgaacatggaaagtatatcccacgcgccggcagagtcatcatcttcctctgcttcttcaacacaacacaagatttggatggaggcccaagatgagctgaagcaaaaactaattgcacaagatgatttcccatggagatcagctactactgcaccacccacaagtgaccaagaggagaaagcgttgaagtatgtgggtggggttgatataagttattcaaaggaacacccatctatggcatgtgggactcttgtagttttggacattcgttccctccaagttgtttatgaagattactctgttctcaccctcagtgtcccttatgttcccggcttccttgcattcagagaggccccggtgcttcttgagcttttggagaagatgaaagccggtgctaatcttttctatccacagctgctaatggtagatggaaatggaatacttcatcctcgaggttttggcttggcttgtcatctgggcattctagcaaatctacctactattgggattggaaaaaatcttcatcatgtggatggtctaacattatccggtgtgaggcaacttcttaaagccaaagaagattgtgctgaagattttattaatttgacaggacgctcagggcgcatatggggagtggcaatgagatctacagacagctccgtgaagcctatatttatttcaattggtcaccgaatttcgcttgatactgccatcaaaattgtaaaactgaattgcaagtatcgtgtgcccgagcctatccggcaggtgaaaactgaaaacactttggaagtattttggttttactgtttttctattcataatggtgatatctcagtaattcagtggacctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

397

Amino Acids

43.92

Weight (kDa)

7.12

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1093
AbsI	CCTCGAGG	1 cut(s)	789
Acc36I	ACCTGC	1 cut(s)	1093
AccII	CGCG	1 cut(s)	365
AciI	CCGC	2 cut(s)	255, 338
AcsI	RAATTY	2 cut(s)	52, 1032
AcuI	CTGAAG	2 cut(s)	458, 948
AfiI	CCNNNNNNNGG	6 cut(s)	45, 184, 367, 574, 842, 894
AgsI	TTSAA	4 cut(s)	399, 526, 558, 1020
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	5 cut(s)	436, 482, 709, 754, 996
AluI	AGCT	5 cut(s)	436, 482, 709, 754, 996
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	238
Ama87I	CYCGRG	2 cut(s)	789, 1088
AoxI	GGCC	2 cut(s)	423, 690
ApeKI	GCWGC	4 cut(s)	120, 230, 282, 754
ApoI	RAATTY	2 cut(s)	52, 1032
AseI	ATTAAT	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	367, 963
AspS9I	GGNCC	4 cut(s)	187, 424, 691, 1185
AsuC2I	CCSGG	4 cut(s)	46, 191, 669, 695
AsuHPI	GGTGA	4 cut(s)	637, 1019, 1117, 1175
AvaI	CYCGRG	2 cut(s)	789, 1088
AvaII	GGWCC	2 cut(s)	187, 1185
BaeGI	GKGCMC	1 cut(s)	1089
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	107, 242, 294, 741
BccI	CCATC	7 cut(s)	247, 277, 412, 577, 761, 866, 1058
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	4 cut(s)	46, 191, 669, 695
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	209, 824
BfmI	CTRYAG	1 cut(s)	987
BfuAI	ACCTGC	1 cut(s)	1093
BglI	GCCNNNNNGGC	1 cut(s)	1099
BglII	AGATCT	1 cut(s)	983
BisI	GCNGC	4 cut(s)	121, 231, 283, 755
BlsI	GCNGC	4 cut(s)	122, 232, 284, 756
Bme1390I	CCNGG	5 cut(s)	46, 71, 191, 669, 695
Bme18I	GGWCC	2 cut(s)	187, 1185
BmeT110I	CYCGRG	2 cut(s)	789, 1088
BmgT120I	GGNCC	4 cut(s)	187, 424, 691, 1185
BmiI	GGNNCC	3 cut(s)	189, 195, 693
BmrFI	CCNGG	5 cut(s)	46, 71, 191, 669, 695
BmsI	GCATC	1 cut(s)	301
BplI	GAGNNNNNCTC	4 cut(s)	40, 72, 119, 151
Bpu10I	CCTNAGC	1 cut(s)	955
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	4 cut(s)	46, 191, 669, 695
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	179, 470, 693
BsaWI	WCCGGW	1 cut(s)	887
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 184, 367, 574, 842, 894
Bse118I	RCCGGY	2 cut(s)	367, 728
Bse3DI	GCAATG	1 cut(s)	984
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	179, 470, 693
BseGI	GGATG	3 cut(s)	423, 784, 877
BseLI	CCNNNNNNNGG	6 cut(s)	45, 184, 367, 574, 842, 894
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	5 cut(s)	50, 306, 664, 969, 1185
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	1089
BseXI	GCAGC	4 cut(s)	107, 242, 294, 741
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	425, 692
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	789, 1088
BsiSI	CCGG	8 cut(s)	45, 191, 368, 669, 695, 729, 888, 1099
BslFI	GGGAC	2 cut(s)	598, 641
BslI	CCNNNNNNNGG	6 cut(s)	45, 184, 367, 574, 842, 894
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	598, 641
BsmI	GAATGC	2 cut(s)	680, 819
BsnI	GGCC	2 cut(s)	425, 692
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	2 cut(s)	789, 1088
Bsp1286I	GDGCHC	2 cut(s)	302, 1089
Bsp143I	GATC	3 cut(s)	322, 476, 983
Bsp19I	CCATGG	1 cut(s)	470
BspACI	CCGC	2 cut(s)	255, 338
BspANI	GGCC	2 cut(s)	425, 692
BspCNI	CTCAG	5 cut(s)	51, 307, 663, 968, 1184
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	189, 195, 693
BspMI	ACCTGC	1 cut(s)	1093
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	2 cut(s)	367, 728
BssAI	RCCGGY	2 cut(s)	367, 728
BssECI	CCNNGG	3 cut(s)	179, 470, 693
BssMI	GATC	3 cut(s)	322, 476, 983
BssT1I	CCWWGG	2 cut(s)	179, 470
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	1145
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	5 cut(s)	59, 315, 650, 955, 1171
BstDSI	CCRYGG	1 cut(s)	470
BstEII	GGTNACC	1 cut(s)	1025
BstF5I	GGATG	3 cut(s)	423, 784, 877
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	2 cut(s)	367, 963
BstKTI	GATC	3 cut(s)	325, 479, 986
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	322, 476, 983
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 706, 960, 1099
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	582
BstPI	GGTNACC	1 cut(s)	1025
BstSCI	CCNGG	5 cut(s)	44, 69, 189, 667, 693
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	1089
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	107, 242, 294, 741
BstX2I	RGATCY	1 cut(s)	983
BstYI	RGATCY	1 cut(s)	983
BsuRI	GGCC	2 cut(s)	425, 692
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	423, 784, 877
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	3 cut(s)	325, 658, 1187
BveI	ACCTGC	1 cut(s)	1093
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	2 cut(s)	367, 963
Cfr10I	RCCGGY	2 cut(s)	367, 728
Cfr13I	GGNCC	4 cut(s)	187, 424, 691, 1185
CseI	GACGC	1 cut(s)	960
CviAII	CATG	4 cut(s)	346, 471, 579, 866
DdeI	CTNAG	5 cut(s)	59, 315, 650, 955, 1171
DpnI	GATC	3 cut(s)	324, 478, 985
DpnII	GATC	3 cut(s)	322, 476, 983
Eco130I	CCWWGG	2 cut(s)	179, 470
Eco31I	GGTCTC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	1168
Eco47I	GGWCC	2 cut(s)	187, 1185
Eco57I	CTGAAG	2 cut(s)	458, 948
Eco88I	CYCGRG	2 cut(s)	789, 1088
Eco91I	GGTNACC	1 cut(s)	1025
EcoO109I	RGGNCCY	2 cut(s)	187, 691
EcoO65I	GGTNACC	1 cut(s)	1025
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	1168
EcoT14I	CCWWGG	2 cut(s)	179, 470
ErhI	CCWWGG	2 cut(s)	179, 470
FaeI	CATG	4 cut(s)	349, 474, 582, 869
FaqI	GGGAC	2 cut(s)	598, 641
FatI	CATG	4 cut(s)	345, 470, 578, 865
FauNDI	CATATG	2 cut(s)	19, 965
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	121, 231, 283, 755
FokI	GGATG	3 cut(s)	430, 771, 884
Fsp4HI	GCNGC	4 cut(s)	121, 231, 283, 755
FspBI	CTAG	2 cut(s)	209, 824
GlaI	GCGC	2 cut(s)	366, 962
GluI	GCNGC	4 cut(s)	121, 231, 283, 755
HaeIII	GGCC	2 cut(s)	425, 692
HapII	CCGG	8 cut(s)	45, 191, 368, 669, 695, 729, 888, 1099
HgaI	GACGC	1 cut(s)	960
HhaI	GCGC	2 cut(s)	367, 963
Hin1II	CATG	4 cut(s)	349, 474, 582, 869
Hin6I	GCGC	2 cut(s)	365, 961
HinP1I	GCGC	2 cut(s)	365, 961
HinfI	GANTC	4 cut(s)	251, 262, 374, 586
HpaII	CCGG	8 cut(s)	45, 191, 368, 669, 695, 729, 888, 1099
HphI	GGTGA	4 cut(s)	637, 1019, 1117, 1175
Hpy166II	GTNNAC	1 cut(s)	1185
Hpy188I	TCNGA	3 cut(s)	60, 276, 686
Hpy188III	TCNNGA	3 cut(s)	100, 243, 704
Hpy8I	GTNNAC	1 cut(s)	1185
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	1145
HpyCH4V	TGCA	6 cut(s)	123, 330, 455, 491, 680, 1074
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 706, 960, 1099
HpyF3I	CTNAG	5 cut(s)	59, 315, 650, 955, 1171
Hsp92II	CATG	4 cut(s)	349, 474, 582, 869
HspAI	GCGC	2 cut(s)	365, 961
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	322, 476, 983
LmnI	GCTCC	1 cut(s)	1001
Lsp1109I	GCAGC	4 cut(s)	107, 242, 294, 741
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	209, 824
MaeIII	GTNAC	3 cut(s)	89, 503, 1025
MalI	GATC	3 cut(s)	324, 478, 985
MboI	GATC	3 cut(s)	322, 476, 983
MboII	GAAGA	7 cut(s)	375, 387, 641, 730, 851, 929, 941
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	1 cut(s)	983
MhlI	GDGCHC	2 cut(s)	302, 1089
MluCI	AATT	9 cut(s)	33, 52, 450, 940, 1020, 1032, 1056, 1069, 1176
MlyI	GAGTC	3 cut(s)	245, 383, 580
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	3 cut(s)	906, 939, 1192
MslI	CAYNNNNRTG	3 cut(s)	85, 870, 1161
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	8 cut(s)	45, 191, 368, 669, 695, 729, 888, 1099
MspR9I	CCNGG	5 cut(s)	46, 71, 191, 669, 695
MunI	CAATTG	1 cut(s)	1020
Mva1269I	GAATGC	2 cut(s)	680, 819
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	488, 706, 960, 1099
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	4 cut(s)	46, 191, 669, 695
NcoI	CCATGG	1 cut(s)	470
NdeI	CATATG	2 cut(s)	19, 965
NdeII	GATC	3 cut(s)	322, 476, 983
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	349, 474, 582, 869
NlaIV	GGNNCC	3 cut(s)	189, 195, 693
NmuCI	GTSAC	2 cut(s)	503, 1025
NspI	RCATGY	1 cut(s)	582
PaeR7I	CTCGAG	1 cut(s)	789
PaqCI	CACCTGC	1 cut(s)	1093
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PctI	GAATGC	2 cut(s)	680, 819
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	4 cut(s)	122, 232, 284, 756
PleI	GAGTC	3 cut(s)	245, 382, 580
PpsI	GAGTC	3 cut(s)	245, 382, 580
PpuMI	RGGWCCY	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	939
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	1025
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	189, 195, 693
PspPI	GGNCC	4 cut(s)	187, 424, 691, 1185
PspPPI	RGGWCCY	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	789
PsuI	RGATCY	1 cut(s)	983
PvuII	CAGCTG	1 cut(s)	754
RseI	CAYNNNNRTG	3 cut(s)	85, 870, 1161
SaqAI	TTAA	3 cut(s)	906, 939, 1192
SatI	GCNGC	4 cut(s)	121, 231, 283, 755
Sau3AI	GATC	3 cut(s)	322, 476, 983
Sau96I	GGNCC	4 cut(s)	187, 424, 691, 1185
SchI	GAGTC	3 cut(s)	245, 383, 580
ScrFI	CCNGG	5 cut(s)	46, 71, 191, 669, 695
SduI	GDGCHC	2 cut(s)	302, 1089
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	987
Sfr274I	CTCGAG	1 cut(s)	789
SinI	GGWCC	2 cut(s)	187, 1185
SlaI	CTCGAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	3 cut(s)	85, 870, 1161
SmlI	CTYRAG	2 cut(s)	704, 789
SmoI	CTYRAG	2 cut(s)	704, 789
Sse9I	AATT	9 cut(s)	33, 52, 450, 940, 1020, 1032, 1056, 1069, 1176
SsiI	CCGC	2 cut(s)	255, 338
SspMI	CTAG	2 cut(s)	209, 824
StyD4I	CCNGG	5 cut(s)	44, 69, 189, 667, 693
StyI	CCWWGG	2 cut(s)	179, 470
TaaI	ACNGT	1 cut(s)	1145
TaqI	TCGA	2 cut(s)	242, 790
TasI	AATT	9 cut(s)	33, 52, 450, 940, 1020, 1032, 1056, 1069, 1176
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	906, 939, 1192
Tru9I	TTAA	3 cut(s)	906, 939, 1192
TscAI	CASTG	3 cut(s)	332, 658, 1187
TseFI	GTSAC	2 cut(s)	503, 1025
TseI	GCWGC	4 cut(s)	120, 230, 282, 754
Tsp45I	GTSAC	2 cut(s)	503, 1025
TspDTI	ATGAA	5 cut(s)	642, 737, 773, 851, 1145
TspGWI	ACGGA	1 cut(s)	988
TspRI	CASTG	3 cut(s)	332, 658, 1187
VpaK11BI	GGWCC	2 cut(s)	187, 1185
VspI	ATTAAT	1 cut(s)	939
XapI	RAATTY	2 cut(s)	52, 1032
XceI	RCATGY	1 cut(s)	582
XhoI	CTCGAG	1 cut(s)	789
XspI	CTAG	2 cut(s)	209, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.