Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

15143217 .. 15145640

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATAGTGAAGGAGCTTCAAGCGAGTCTTCTTCTTCTGGAGATCAGCTCGAGAAGTGGACAGAAGAGCAGGATGAGCTGAAGAAGAAACTGATCGCGTACGATGACTTCACATGGAAGTTATCTTCATCAACGGAACTGTCTCAGGGATCGGAGATACTTAAGTATGTTGGAGGTGTAGACATGAGCTTTTGCAAAGAAGATTCTTCCGTCGCATGCGCTTGTCTCGTCGTTCTTGAGCTTCCTTCTCTCCGTGTAGTCCACCATGACTTCTCTCTTCTCCGCCTCCATGTTCCTTATGTCCCTGGATTTCTTGCCTTTCGTGAGGCTCCGGTTCTTTTGCAGATTCTGCAGAAGATGAGAGATGAGAAGCATCCATTCTATCCTCAGGTACTGATGGTGGATGGAAATGGAATACTTCATCCACGAGGATTTGGCTTGGCGTGTCATTTAGGTGTTCTTGCTCACCTACCAACCATTGGGGTCGGAAAGAATCTGCATCATGTGGATGGTCTGAATCAATCTGAGGTTAAACAGTCGCTTCAGCTCCAAATAAACGAGCATGAGCAAACTATCACTTTGGTAGGAAACTCTGGAATTACATGGGGAGTAGGATTTAGGCCAACTCTGAGTTCTCTAAAGCCCATATATGTATCGGTTGGCCATCGCATATCACTGGACTCTGCCGTTGAAGTTGTCAAGATAACCTGCAAGTACCGTGTTCCAGAACCTATTAGACAGGCAGATATTAGATCAAGAGCATATCTCCAGAAGCATCAAACTGAGTCTTTTAAAGAACTGGCAGTGCGACCACCGGATCAGACTGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

277

Amino Acids

30.88

Weight (kDa)

6.05

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	46 - 249	6e-64	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	98
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	157, 825
AcoI	YGGCCR	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	101, 527
AfaI	GTAC	3 cut(s)	101, 393, 716
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	21, 692
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AluBI	AGCT	6 cut(s)	17, 49, 79, 189, 241, 547
AluI	AGCT	6 cut(s)	17, 49, 79, 189, 241, 547
Alw26I	GTCTC	2 cut(s)	147, 230
AlwI	GGATC	2 cut(s)	157, 825
AlwNI	CAGNNNCTG	2 cut(s)	349, 394
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	620, 661
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	387
BaeI	ACNNNNGTAYC	2 cut(s)	149, 182
BalI	TGGCCA	1 cut(s)	663
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	4 cut(s)	391, 398, 503, 672
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	147, 230
BfmI	CTRYAG	1 cut(s)	350
BfrI	CTTAAG	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	716
Bme1390I	CCNGG	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	382, 508, 784
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	4 cut(s)	33, 65, 750, 782
BpmI	CTGGAG	2 cut(s)	60, 752
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	331, 814
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	681, 804
Bse21I	CCTNAGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	5 cut(s)	79, 373, 409, 421, 514
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	5 cut(s)	158, 401, 516, 620, 774
BseNI	ACTGG	2 cut(s)	681, 804
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	622, 663
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	332, 815
BsiWI	CGTACG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	147, 230
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	622, 663
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	5 cut(s)	43, 93, 149, 752, 817
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	2 cut(s)	622, 663
BspCNI	CTCAG	5 cut(s)	157, 400, 517, 621, 775
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	2 cut(s)	157, 825
BspQI	GCTCTTC	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	681, 804
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	43, 93, 149, 752, 817
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	141, 537, 719
Bst6I	CTCTTC	2 cut(s)	60, 282
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	5 cut(s)	144, 387, 525, 629, 783
BstF5I	GGATG	5 cut(s)	79, 373, 409, 421, 514
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	5 cut(s)	46, 96, 152, 755, 820
BstMAI	GTCTC	2 cut(s)	147, 230
BstMBI	GATC	5 cut(s)	43, 93, 149, 752, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 349
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	622, 663
BtgZI	GCGATG	1 cut(s)	650
BtsCI	GGATG	5 cut(s)	79, 373, 409, 421, 514
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	2 cut(s)	674, 810
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	2 cut(s)	349, 394
CfoI	GCGC	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	100, 392, 715
CviAII	CATG	8 cut(s)	114, 184, 216, 266, 290, 503, 563, 603
CviQI	GTAC	3 cut(s)	100, 392, 715
DdeI	CTNAG	5 cut(s)	144, 387, 525, 629, 783
DpnI	GATC	5 cut(s)	45, 95, 151, 754, 819
DpnII	GATC	5 cut(s)	43, 93, 149, 752, 817
DraI	TTTAAA	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	60, 282
EarI	CTCTTC	2 cut(s)	60, 282
EciI	GGCGGA	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	101, 527
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	8 cut(s)	117, 187, 219, 269, 293, 506, 566, 606
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	8 cut(s)	113, 183, 215, 265, 289, 502, 562, 602
FblI	GTMKAC	1 cut(s)	180
FokI	GGATG	5 cut(s)	86, 360, 408, 416, 521
GlaI	GCGC	1 cut(s)	220
GsuI	CTGGAG	2 cut(s)	60, 752
HaeIII	GGCC	2 cut(s)	622, 663
HapII	CCGG	2 cut(s)	332, 815
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	8 cut(s)	117, 187, 219, 269, 293, 506, 566, 606
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	7 cut(s)	26, 203, 346, 493, 517, 680, 785
HpaII	CCGG	2 cut(s)	332, 815
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	3 cut(s)	60, 181, 262
Hpy188I	TCNGA	6 cut(s)	154, 488, 516, 526, 630, 822
Hpy188III	TCNNGA	9 cut(s)	39, 52, 236, 323, 594, 700, 725, 756, 769
Hpy8I	GTNNAC	3 cut(s)	60, 181, 262
Hpy99I	CGWCG	2 cut(s)	215, 233
HpyAV	CCTTC	2 cut(s)	5, 255
HpyCH4III	ACNGT	3 cut(s)	141, 537, 719
HpyCH4V	TGCA	5 cut(s)	195, 343, 352, 499, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 349
HpyF3I	CTNAG	5 cut(s)	144, 387, 525, 629, 783
Hsp92II	CATG	8 cut(s)	117, 187, 219, 269, 293, 506, 566, 606
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	43, 93, 149, 752, 817
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	14, 334, 552
LweI	GCATC	3 cut(s)	382, 508, 784
MalI	GATC	5 cut(s)	45, 95, 151, 754, 819
MboI	GATC	5 cut(s)	43, 93, 149, 752, 817
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	1 cut(s)	597
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	3 cut(s)	35, 674, 794
MmeI	TCCRAC	2 cut(s)	151, 466
MnlI	CCTC	6 cut(s)	167, 296, 319, 396, 422, 520
Mox20I	TGGCCA	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	4 cut(s)	162, 531, 792, 832
MslI	CAYNNNNRTG	2 cut(s)	453, 507
Msp20I	TGGCCA	1 cut(s)	663
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	2 cut(s)	332, 815
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	76, 349
NdeII	GATC	5 cut(s)	43, 93, 149, 752, 817
NlaIII	CATG	8 cut(s)	117, 187, 219, 269, 293, 506, 566, 606
NlaIV	GGNNCC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	203, 346, 493, 517
Pfl23II	CGTACG	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	479
PleI	GAGTC	3 cut(s)	34, 674, 793
PpsI	GAGTC	3 cut(s)	34, 674, 793
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspLI	CGTACG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	354
PstNI	CAGNNNCTG	2 cut(s)	349, 394
RsaI	GTAC	3 cut(s)	101, 393, 716
RsaNI	GTAC	3 cut(s)	100, 392, 715
RseI	CAYNNNNRTG	2 cut(s)	453, 507
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	162, 531, 792, 832
Sau3AI	GATC	5 cut(s)	43, 93, 149, 752, 817
SchI	GAGTC	3 cut(s)	35, 674, 794
ScrFI	CCNGG	1 cut(s)	306
SfaNI	GCATC	3 cut(s)	382, 508, 784
SfcI	CTRYAG	1 cut(s)	350
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	453, 507
SmlI	CTYRAG	3 cut(s)	50, 161, 236
SmoI	CTYRAG	3 cut(s)	50, 161, 236
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	141, 537, 719
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	203, 346, 493, 517
Tru1I	TTAA	4 cut(s)	162, 531, 792, 832
Tru9I	TTAA	4 cut(s)	162, 531, 792, 832
TscAI	CASTG	2 cut(s)	681, 810
TspDTI	ATGAA	2 cut(s)	117, 410
TspGWI	ACGGA	3 cut(s)	149, 199, 242
TspRI	CASTG	2 cut(s)	681, 810
Van91I	CCANNNNNTGG	1 cut(s)	479
Vha464I	CTTAAG	1 cut(s)	161
XceI	RCATGY	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.