Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

66629702 .. 66631945

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG514200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAAGTATATCCCACGCGCCGGCAGAGTCATCATCTTCTTCTGCTTCTTCAACACAACACAAGATTTGGATGGAGGCCCAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAGAGCGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAAAGGAACACCCATCTATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATTCCCTCCAAGTTGTTTATGAAGATTACTCTGTTCTCACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAGGCCGGTGCTAATATTTTCTATCCACAGCTGCTAATGGTAGATGGAAACGGAATACTTCATCCTCGAGGCAAGTCCTTTGACACAAATCCTTGGGCAATACACGCTTGCCATTTTGTAAATGAAGCTAAAGATTTCTTTGTAGGTTTTGGCTTGGCTTGTCATCTTGGCATTCTAGCAAATCCACCTACTATTGGGATTGCAAAAAATCTTCATCATGTGGATGGTCTAACATTATCTGGTGTGAGGCAACTTCTTAAAGCCAAAGAAGACTGTGCTGAAGATTTTATTAATTTGACGCTCAGGGCGTATATGGGGGGTGGCAGCTGCGTGAAGCCTATATTTATTTCAATTGGTCACCGCATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGACTTGCAAGTATCGTGTGCCAGAGCCTATCCGGCAGGCTGATATCAGATCTAGAGAATATCTTCGGAAGCATCAAGCGATGATCGATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

279

Amino Acids

30.85

Weight (kDa)

6.45

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	43 - 140	1.9e-29	Endonuclease V
Endonuclease_5	PF04493	165 - 263	3.8e-23	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	414
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	709
AcuI	CTGAAG	1 cut(s)	648
AfiI	CCNNNNNNNGG	3 cut(s)	22, 199, 542
AgsI	TTSAA	4 cut(s)	54, 151, 183, 699
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	5 cut(s)	107, 334, 379, 476, 675
AluI	AGCT	5 cut(s)	107, 334, 379, 476, 675
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	3 cut(s)	78, 315, 351
ApeKI	GCWGC	3 cut(s)	379, 672, 675
AseI	ATTAAT	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	79, 316
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	262, 698
AvaI	CYCGRG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	366, 662, 684
BccI	CCATC	5 cut(s)	67, 202, 386, 566, 737
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	2 cut(s)	524, 798
BglI	GCCNNNNNGGC	1 cut(s)	778
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	3 cut(s)	380, 673, 676
BlsI	GCNGC	3 cut(s)	381, 674, 677
Bme1390I	CCNGG	2 cut(s)	294, 320
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	79, 316
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	294, 320
BmsI	GCATC	1 cut(s)	826
BpiI	GAAGAC	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	831
BsaJI	CCNNGG	3 cut(s)	95, 318, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 199, 542
Bse118I	RCCGGY	2 cut(s)	22, 353
BseBI	CCWGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	831
BseDI	CCNNGG	3 cut(s)	95, 318, 440
BseGI	GGATG	3 cut(s)	78, 409, 577
BseLI	CCNNNNNNNGG	3 cut(s)	22, 199, 542
BseMII	CTCAG	2 cut(s)	289, 664
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	366, 662, 684
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	3 cut(s)	80, 317, 353
BshVI	ATCGAT	1 cut(s)	831
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	4 cut(s)	23, 320, 354, 778
BslFI	GGGAC	2 cut(s)	223, 266
BslI	CCNNNNNNNGG	3 cut(s)	22, 199, 542
BsmFI	GGGAC	2 cut(s)	223, 266
BsmI	GAATGC	2 cut(s)	305, 519
BsnI	GGCC	3 cut(s)	80, 317, 353
BsoBI	CYCGRG	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	101, 794, 828, 832
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	3 cut(s)	80, 317, 353
BspCNI	CTCAG	2 cut(s)	288, 663
BspDI	ATCGAT	1 cut(s)	831
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	318
BsrFI	RCCGGY	2 cut(s)	22, 353
BssAI	RCCGGY	2 cut(s)	22, 353
BssECI	CCNNGG	3 cut(s)	95, 318, 440
BssMI	GATC	4 cut(s)	101, 794, 828, 832
BssT1I	CCWWGG	2 cut(s)	95, 440
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	24, 457, 783
BstDEI	CTNAG	2 cut(s)	275, 650
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	704
BstF5I	GGATG	3 cut(s)	78, 409, 577
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	4 cut(s)	104, 797, 831, 835
BstMBI	GATC	4 cut(s)	101, 794, 828, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 331, 452, 778
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	292, 318
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	366, 662, 684
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
Bsu15I	ATCGAT	1 cut(s)	831
BsuRI	GGCC	3 cut(s)	80, 317, 353
BsuTUI	ATCGAT	1 cut(s)	831
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	78, 409, 577
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	24, 457, 783
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	2 cut(s)	22, 353
Cfr13I	GGNCC	2 cut(s)	79, 316
ClaI	ATCGAT	1 cut(s)	831
CseI	GACGC	1 cut(s)	655
CviAII	CATG	3 cut(s)	96, 204, 566
DdeI	CTNAG	2 cut(s)	275, 650
DpnI	GATC	4 cut(s)	103, 796, 830, 834
DpnII	GATC	4 cut(s)	101, 794, 828, 832
Eco130I	CCWWGG	2 cut(s)	95, 440
Eco32I	GATATC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	95, 440
ErhI	CCWWGG	2 cut(s)	95, 440
FaeI	CATG	3 cut(s)	99, 207, 569
FaqI	GGGAC	2 cut(s)	223, 266
FatI	CATG	3 cut(s)	95, 203, 565
Fnu4HI	GCNGC	3 cut(s)	380, 673, 676
FokI	GGATG	3 cut(s)	85, 396, 584
Fsp4HI	GCNGC	3 cut(s)	380, 673, 676
FspBI	CTAG	2 cut(s)	524, 798
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	380, 673, 676
HaeIII	GGCC	3 cut(s)	80, 317, 353
HapII	CCGG	4 cut(s)	23, 320, 354, 778
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	99, 207, 569
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	2 cut(s)	29, 211
HpaII	CCGG	4 cut(s)	23, 320, 354, 778
HphI	GGTGA	2 cut(s)	262, 698
Hpy188I	TCNGA	3 cut(s)	311, 794, 813
Hpy188III	TCNNGA	2 cut(s)	329, 798
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4V	TGCA	4 cut(s)	116, 305, 551, 753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 331, 452, 778
HpyF3I	CTNAG	2 cut(s)	275, 650
Hsp92II	CATG	3 cut(s)	99, 207, 569
HspAI	GCGC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	101, 794, 828, 832
Lsp1109I	GCAGC	3 cut(s)	366, 662, 684
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	2 cut(s)	524, 798
MaeIII	GTNAC	2 cut(s)	128, 704
MalI	GATC	4 cut(s)	103, 796, 830, 834
MboI	GATC	4 cut(s)	101, 794, 828, 832
MboII	GAAGA	9 cut(s)	30, 33, 42, 266, 355, 551, 629, 641, 800
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	1 cut(s)	794
MluCI	AATT	3 cut(s)	640, 699, 735
MlyI	GAGTC	2 cut(s)	38, 205
MnlI	CCTC	8 cut(s)	70, 130, 248, 284, 307, 410, 423, 588
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	2 cut(s)	606, 639
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	379, 675
MspI	CCGG	4 cut(s)	23, 320, 354, 778
MspR9I	CCNGG	2 cut(s)	294, 320
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	2 cut(s)	305, 519
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	113, 331, 452, 778
NaeI	GCCGGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	4 cut(s)	101, 794, 828, 832
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	99, 207, 569
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	2 cut(s)	128, 704
NspI	RCATGY	1 cut(s)	207
PaeR7I	CTCGAG	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PctI	GAATGC	2 cut(s)	305, 519
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	807
PkrI	GCNGC	3 cut(s)	381, 674, 677
PleI	GAGTC	2 cut(s)	37, 205
PpsI	GAGTC	2 cut(s)	37, 205
PshBI	ATTAAT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	79, 316
PspXI	VCTCGAGB	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	794
PvuII	CAGCTG	2 cut(s)	379, 675
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	606, 639
SatI	GCNGC	3 cut(s)	380, 673, 676
Sau3AI	GATC	4 cut(s)	101, 794, 828, 832
Sau96I	GGNCC	2 cut(s)	79, 316
SchI	GAGTC	2 cut(s)	38, 205
ScrFI	CCNGG	2 cut(s)	294, 320
SetI	ASST	7 cut(s)	109, 336, 381, 478, 496, 538, 677
SfaNI	GCATC	1 cut(s)	826
Sfr274I	CTCGAG	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	329, 414
SmoI	CTYRAG	2 cut(s)	329, 414
Sse9I	AATT	3 cut(s)	640, 699, 735
SsiI	CCGC	1 cut(s)	709
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	524, 798
StyD4I	CCNGG	2 cut(s)	292, 318
StyI	CCWWGG	2 cut(s)	95, 440
TaaI	ACNGT	1 cut(s)	623
TaqI	TCGA	2 cut(s)	415, 831
TasI	AATT	3 cut(s)	640, 699, 735
Tru1I	TTAA	2 cut(s)	606, 639
Tru9I	TTAA	2 cut(s)	606, 639
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	128, 704
TseI	GCWGC	3 cut(s)	379, 672, 675
Tsp45I	GTSAC	2 cut(s)	128, 704
TspDTI	ATGAA	6 cut(s)	221, 267, 362, 398, 486, 551
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	639
XbaI	TCTAGA	1 cut(s)	797
XceI	RCATGY	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	524, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.