Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

38692720 .. 38695774

Gene Structure 3055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G463600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAGAGCAATCCCATGAACAAGGCTCGATAGAGACATCACCTTCTTCTTCTTCAGTAGACCATAAAACTTGGATAGAGACCCAGGATTTTCTGAAGAAAAAGTTGATTGCAGAAGATGATTTCACATGGAGATTAGCTGTTACAGGAAGGTCAATGGAGAAAGAGGAGGAGGTGTTGAAGTATGTGGGTGGAGTTGATATAAGCTATTCAAAGGAAGACCCATCAATGGCATGTGGGATTCTTGTAGTTTTGGACCTCCAAACTCTCCAAGTTGTCTATGAAGACTTCTCTATTGTCACCCTCCATGTCCCTTATCTTCCTGGCTTCCTTGCTTTCAGAGAGGCCCCAGTGCTTCTTGAGCTTTTGGAGAAAATGAAAACCAATGCTAATCCTTTATATCCTCAGCTGCTAATGGTAGATGGAAATGGAACACTTCATCCTCGAGGTTTTGGCTTGGCTTGTCACCTTGGCATTCTGGCAAATCTACCTACTGTTGGGATTGGAAAAAATCTTCACCATGTGGATGGCCTAACACTATCTGGTGTGATGCAACTTCTTAAAGCCAAGGAAGACTACGCTCAAGATTTTGTTACTTTGAAAGGATGCTCTGGGCGTATATGGGGAGTGGCAGTGAGATCTACTGGTGGCTCATTGAAGCCTATATTTATCTCAGTTGGTCACCGTATAGCACTTGATACTGCCATCAGGATTGTAAAAATGACTTGCAAATTTCGTGTCCCGGAGCCTATTCGGCAGGCTGACATAAGATCCAGAGACTATGTTCGGAAGCATCAAATGAGAATGTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

272

Amino Acids

30.27

Weight (kDa)

7.12

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	2 cut(s)	39, 116
AdeI	CACNNNGTG	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	229, 497
AgsI	TTSAA	4 cut(s)	181, 213, 601, 658
AjnI	CCWGG	2 cut(s)	84, 322
AloI	GAACNNNNNNTCC	2 cut(s)	424, 456
AluBI	AGCT	4 cut(s)	140, 207, 364, 409
AluI	AGCT	4 cut(s)	140, 207, 364, 409
Alw26I	GTCTC	3 cut(s)	29, 74, 771
AlwI	GGATC	1 cut(s)	765
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	345, 529
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	731
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
AspS9I	GGNCC	2 cut(s)	256, 346
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	5 cut(s)	33, 292, 458, 509, 674
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	256
BbsI	GAAGAC	3 cut(s)	225, 291, 579
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	4 cut(s)	232, 416, 521, 713
BciT130I	CCWGG	2 cut(s)	86, 324
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	3 cut(s)	29, 74, 771
BglI	GCCNNNNNGGC	1 cut(s)	754
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	3 cut(s)	86, 324, 743
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	256, 346
BmiI	GGNNCC	2 cut(s)	348, 747
BmrFI	CCNGG	3 cut(s)	86, 324, 743
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	3 cut(s)	540, 596, 802
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	3 cut(s)	225, 291, 579
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	380, 567
BpuMI	CCSGG	1 cut(s)	743
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	84, 469, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 497
Bse1I	ACTGG	2 cut(s)	350, 649
BseBI	CCWGG	2 cut(s)	86, 324
BseDI	CCNNGG	3 cut(s)	84, 469, 567
BseGI	GGATG	3 cut(s)	439, 532, 611
BseLI	CCNNNNNNNGG	2 cut(s)	229, 497
BseMII	CTCAG	2 cut(s)	419, 687
BseNI	ACTGG	2 cut(s)	350, 649
BseRI	GAGGAG	2 cut(s)	182, 185
BseXI	GCAGC	1 cut(s)	396
BshFI	GGCC	2 cut(s)	347, 531
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	2 cut(s)	296, 725
BslI	CCNNNNNNNGG	2 cut(s)	229, 497
BsmAI	GTCTC	3 cut(s)	29, 74, 771
BsmFI	GGGAC	2 cut(s)	296, 725
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	347, 531
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	638, 770
BspANI	GGCC	2 cut(s)	347, 531
BspCNI	CTCAG	2 cut(s)	418, 686
BspLI	GGNNCC	2 cut(s)	348, 747
BspPI	GGATC	1 cut(s)	765
BspTNI	GGTCTC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	350, 649
BssECI	CCNNGG	3 cut(s)	84, 469, 567
BssMI	GATC	2 cut(s)	638, 770
BssT1I	CCWWGG	2 cut(s)	469, 567
Bst2UI	CCWGG	2 cut(s)	86, 324
Bst4CI	ACNGT	2 cut(s)	496, 686
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	2 cut(s)	405, 673
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	439, 532, 611
BstKTI	GATC	2 cut(s)	641, 773
BstMAI	GTCTC	3 cut(s)	29, 74, 771
BstMBI	GATC	2 cut(s)	638, 770
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 754
BstNI	CCWGG	2 cut(s)	86, 324
BstNSI	RCATGY	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	84, 322, 741
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	3 cut(s)	225, 291, 579
BstX2I	RGATCY	2 cut(s)	638, 770
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	2 cut(s)	638, 770
BsuRI	GGCC	2 cut(s)	347, 531
BtsCI	GGATG	3 cut(s)	439, 532, 611
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	357, 639
Cac8I	GCNNGC	1 cut(s)	759
Cfr13I	GGNCC	2 cut(s)	256, 346
CviAII	CATG	5 cut(s)	17, 129, 234, 308, 521
DdeI	CTNAG	2 cut(s)	405, 673
DpnI	GATC	2 cut(s)	640, 772
DpnII	GATC	2 cut(s)	638, 770
DraIII	CACNNNGTG	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	469, 567
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	39, 116
Eco88I	CYCGRG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	84, 322
EcoT14I	CCWWGG	2 cut(s)	469, 567
ErhI	CCWWGG	2 cut(s)	469, 567
FaeI	CATG	5 cut(s)	20, 132, 237, 311, 524
FaqI	GGGAC	2 cut(s)	296, 725
FatI	CATG	5 cut(s)	16, 128, 233, 307, 520
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	3 cut(s)	426, 539, 618
Fsp4HI	GCNGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	347, 531
HapII	CCGG	1 cut(s)	743
Hin1II	CATG	5 cut(s)	20, 132, 237, 311, 524
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	5 cut(s)	33, 292, 458, 509, 674
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	96, 341, 789
Hpy188III	TCNNGA	4 cut(s)	359, 584, 709, 774
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	54, 144
HpyCH4III	ACNGT	2 cut(s)	496, 686
HpyCH4V	TGCA	3 cut(s)	113, 553, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 754
HpyF3I	CTNAG	2 cut(s)	405, 673
Hsp92II	CATG	5 cut(s)	20, 132, 237, 311, 524
Kzo9I	GATC	2 cut(s)	638, 770
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	3 cut(s)	540, 596, 802
MaeIII	GTNAC	5 cut(s)	142, 298, 464, 592, 680
MalI	GATC	2 cut(s)	640, 772
MboI	GATC	2 cut(s)	638, 770
MflI	RGATCY	2 cut(s)	638, 770
MluCI	AATT	1 cut(s)	731
MnlI	CCTC	9 cut(s)	160, 163, 166, 269, 314, 337, 414, 440, 453
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	3 cut(s)	86, 324, 743
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	86, 324
MwoI	GCNNNNNNNGC	2 cut(s)	361, 754
NciI	CCSGG	1 cut(s)	743
NdeII	GATC	2 cut(s)	638, 770
NlaIII	CATG	5 cut(s)	20, 132, 237, 311, 524
NlaIV	GGNNCC	2 cut(s)	348, 747
NmuCI	GTSAC	3 cut(s)	298, 464, 680
NspI	RCATGY	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	444
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	741
PkrI	GCNGC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	84, 322
PspEI	GGTNACC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	84, 322
PspN4I	GGNNCC	2 cut(s)	348, 747
PspPI	GGNCC	2 cut(s)	256, 346
PspXI	VCTCGAGB	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	638, 770
PvuII	CAGCTG	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	2 cut(s)	638, 770
Sau96I	GGNCC	2 cut(s)	256, 346
ScrFI	CCNGG	3 cut(s)	86, 324, 743
SfaNI	GCATC	3 cut(s)	540, 596, 802
Sfr274I	CTCGAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	359, 444, 582
SmoI	CTYRAG	3 cut(s)	359, 444, 582
Sse9I	AATT	1 cut(s)	731
StyD4I	CCNGG	3 cut(s)	84, 322, 741
StyI	CCWWGG	2 cut(s)	469, 567
TaaI	ACNGT	2 cut(s)	496, 686
TaqI	TCGA	2 cut(s)	29, 445
TasI	AATT	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	357, 639
TseFI	GTSAC	3 cut(s)	298, 464, 680
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	3 cut(s)	298, 464, 680
TspDTI	ATGAA	4 cut(s)	33, 297, 392, 428
TspRI	CASTG	2 cut(s)	357, 639
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.