Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002673

Physical Location & Seq

Genomic Coordinates Reverse (-)

69037809 .. 69040871

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGGCCCAAGATGAGCTGAAGCAAAAACTAATTGCACAAGATGATTTCCCATGGAGATCAGCTACTACTGCACCACCCACAAGTGACCAAGAGGAGAAAGCGTTGAAGTATGTGGGTGGGGTTGATATAAGTTATTCAAAGGAACACCCATCTATGGCATGTGGGACTCTTGTAGTTTTGGACATTCATTCCCTCCAAGTTGTTTACGAAGATTACTCTGTTCTTACCCTCAGTGTCCCTTATGTTCCTGGCTTCCTTGCATTCAGAGAGGCCCCGGTGCTTCTTGAGCTTTTGGAGAAGATGAAAGCCGGTGCTAATCTTTTCTATCCACAGCTGCTAATGGTAGATGGAAATGGAATACTTCATCCTCGAGCTAAACTTCATCATGTGGATGGTCTAACATTATCCGGTGTGAGGCAACTTCTTAAAGCCAAAGAAGACTGTGCTGAAGATTTTATTAATTTGACAGGACGCTCAGGGCGTATATGGGGAGTGGCAATGAGATCTACAGACGGCTCCGTGAAGCCTATATTTATTTCAATTGGTCACCGAATTTCGCTTGATACTGCCATCAAAATTGTAAAACTGACTTGCAAGTATCGTGTGCCAGAGCCTATCCGGCAGGCTGATATCAGATCTAGAGAATATCTTCGGAAGCATCAAGCGATGATCTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016888 GO:0016891 GO:0016893 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_5

Protein Analysis

227

Amino Acids

25.46

Weight (kDa)

8.35

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Endonuclease_5	PF04493	29 - 125	1.2e-29	Endonuclease V
Endonuclease_5	PF04493	144 - 211	9.4e-17	Endonuclease V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31150 AT4G31150 AT4G31150 AT4G31150
fragaria_vesca	FvH4_2g30570 FvH4_2g30570 FvH4_2g30570 FvH4_2g30570
malus_domestica	MD08G1132300.v1.1
prunus_persica	Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1 Prupe.1G463600_v2.0.a1
pyrus_communis	pycom08g11070
rosa_chinensis	RchiOBHm_Chr6g0312441 RchiOBHm_Chr6g0312501
rosa_laevigata	RLG00000010323 RLG00000010328
rosa_multiflora	Rmu_sc0008363.1_g000018
rosa_roxburghii	Rroxscaffold_1G00063820 Rroxscaffold_2G00098010 Rroxscaffold_7G00156790
rosa_rugosa	Rorug06G0395800 Rorug06G0396000
rosa_samantha	Rh4DG302300 Rh5CG565400 Rh6AG513200 Rh6BG524000 Rh6CG529500 Rh6DG514200 Rh6DG515300
rosa_wichuraiana	Rw6G044610 Rw6G044630 Rw6G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	2 cut(s)	41, 471
AfiI	CCNNNNNNNGG	2 cut(s)	157, 417
AgsI	TTSAA	3 cut(s)	109, 141, 543
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	19, 65, 292, 337, 377
AluI	AGCT	5 cut(s)	19, 65, 292, 337, 377
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	2 cut(s)	6, 273
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	555
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	651
AspS9I	GGNCC	2 cut(s)	7, 274
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	4 cut(s)	160, 344, 389, 581
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	278
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	1 cut(s)	510
BglI	GCCNNNNNGGC	1 cut(s)	622
BglII	AGATCT	2 cut(s)	506, 638
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	252, 278
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	7, 274
BmiI	GGNNCC	2 cut(s)	276, 520
BmrFI	CCNGG	2 cut(s)	252, 278
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	53, 276
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 417
Bse118I	RCCGGY	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	53, 276
BseGI	GGATG	2 cut(s)	367, 400
BseLI	CCNNNNNNNGG	2 cut(s)	157, 417
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	247, 492
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	8, 275
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	4 cut(s)	278, 312, 411, 622
BslFI	GGGAC	2 cut(s)	181, 224
BslI	CCNNNNNNNGG	2 cut(s)	157, 417
BsmFI	GGGAC	2 cut(s)	181, 224
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	8, 275
BsoBI	CYCGRG	1 cut(s)	372
Bsp143I	GATC	4 cut(s)	59, 506, 638, 672
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	8, 275
BspCNI	CTCAG	2 cut(s)	246, 491
BspLI	GGNNCC	2 cut(s)	276, 520
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	53, 276
BssMI	GATC	4 cut(s)	59, 506, 638, 672
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	2 cut(s)	233, 478
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	367, 400
BstKTI	GATC	4 cut(s)	62, 509, 641, 675
BstMBI	GATC	4 cut(s)	59, 506, 638, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 289, 622
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	250, 276
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	506, 638
BstYI	RGATCY	2 cut(s)	506, 638
BsuRI	GGCC	2 cut(s)	8, 275
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	367, 400
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	7, 274
CseI	GACGC	1 cut(s)	483
CviAII	CATG	3 cut(s)	54, 162, 389
DdeI	CTNAG	2 cut(s)	233, 478
DpnI	GATC	4 cut(s)	61, 508, 640, 674
DpnII	GATC	4 cut(s)	59, 506, 638, 672
DraI	TTTAAA	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	41, 471
Eco88I	CYCGRG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 165, 392
FaqI	GGGAC	2 cut(s)	181, 224
FatI	CATG	3 cut(s)	53, 161, 388
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	354, 407
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	8, 275
HapII	CCGG	4 cut(s)	278, 312, 411, 622
HgaI	GACGC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	57, 165, 392
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	4 cut(s)	278, 312, 411, 622
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	269, 638, 657
Hpy188III	TCNNGA	2 cut(s)	287, 642
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	4 cut(s)	38, 74, 263, 597
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 289, 622
HpyF3I	CTNAG	2 cut(s)	233, 478
Hsp92II	CATG	3 cut(s)	57, 165, 392
Kzo9I	GATC	4 cut(s)	59, 506, 638, 672
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	86, 548
MalI	GATC	4 cut(s)	61, 508, 640, 674
MboI	GATC	4 cut(s)	59, 506, 638, 672
MboII	GAAGA	5 cut(s)	224, 313, 452, 464, 644
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	2 cut(s)	506, 638
MluCI	AATT	5 cut(s)	33, 463, 543, 555, 579
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	88, 206, 242, 265, 381, 411
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	3 cut(s)	429, 462, 678
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	4 cut(s)	278, 312, 411, 622
MspR9I	CCNGG	2 cut(s)	252, 278
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	71, 289, 622
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	59, 506, 638, 672
NlaIII	CATG	3 cut(s)	57, 165, 392
NlaIV	GGNNCC	2 cut(s)	276, 520
NmuCI	GTSAC	2 cut(s)	86, 548
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	651
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	250
PspEI	GGTNACC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	276, 520
PspPI	GGNCC	2 cut(s)	7, 274
PspXI	VCTCGAGB	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	506, 638
PvuII	CAGCTG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	429, 462, 678
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	4 cut(s)	59, 506, 638, 672
Sau96I	GGNCC	2 cut(s)	7, 274
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	252, 278
SetI	ASST	5 cut(s)	21, 67, 294, 339, 379
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	287, 372
SmoI	CTYRAG	2 cut(s)	287, 372
Sse9I	AATT	5 cut(s)	33, 463, 543, 555, 579
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	250, 276
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	33, 463, 543, 555, 579
Tru1I	TTAA	3 cut(s)	429, 462, 678
Tru9I	TTAA	3 cut(s)	429, 462, 678
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	86, 548
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	86, 548
TspDTI	ATGAA	4 cut(s)	179, 320, 356, 374
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.