Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010717

Physical Location & Seq

Genomic Coordinates Reverse (-)

23788224 .. 23791196

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGACAGCAGAGAAGGTCATCACATGGAAATGCATTTTCCCAGTGTGTTGTTCCAAGAGTACTAGTGAATATGCAGATTCCACAAGACAAGTCCAAGATAAGCAAACCCCTTTTCTGCAGCAAAGGCTGTCCATGTCAGATGTAATTAGCGACCCCAGCTATGCAGATGATCTCTCCAATTCTTTTTCCGGCCTAAATCTTCATGTGTTTTCGCTATCGGAGCTTAAAGTTGCAACAAACAGCTTTTCATGGAGTAATTTGCTTGGTGAAGGTGGCTTTGGACCTGTTTACAAGGGGTTTGTTGACGACAATCTTAGGCCTGGAACATTGAAGGCTCAGCCTGTAGCAGTCAAACTATTGAACTTGGATGGCTTTCAAGGCCATAGAGAGTGGCTGGCAGAACTTGTATTTCTTGGACAGCTGAGGCATCCCAATATTGTTAAGCTGATCGGATATTGTTGCGAAGAGGAGCATAGGCTTCTGGTATACGAACACATAGCCAGAGGAAGCTTGGAAGATCAACTCTTCAGAAGATATTCTGCCGCTCTTCCATGGTCAACCAGAATGAAAATCGCAGTTGGAGCCTCTAAGGGCCTAGCCTTCCTCCATGAAGATCATAGGCCAGTCATATTCAGAGATTTCAAAACTTCAAATGTTCTTGTAGACTCTGATTACACAGCAAAACTCTCAGATTTTGGGTTAGCAAAGGATGGTCCAGAAGGAGAAGAAACACATGTGGTAACACGTATACTAGGAACTCAAGGGTATGCAGCCCCTGAATACTTAAGAACAGGTCACTTAACAACCAAGAGCGATGTGTATAGCTTTGGAGTAGTTCTATTAGAGCTGTTGACAGGAAAAAGGTCACTAGACAGAACCCGCCGGAGCCGAGAACAATGCCTTGTGGAATGGGCAAGGCCTCTGCTGAAGGACCCAAGAAAGCTCAACAGGATCATAGACCCAAGATTGGAGGGACAATATTCCACCAAAGGGGCAAGAAAGGCAGCTACATTGGCTTATGCTTGCTTGAGCAACAACCCCAAGTCCAGGCCTATGATGACCGATGTGGTTATGATCTTGGAGTCTCTTCAGGGATTCAACGAAGCCTTAATTTATCAACCATTTGTTTATGTCGCACCAAGTGAAGAAAAGGATTGCGATGAAGAAAAGGGAGACTACCATTGCAGATACACCCTCAAAGAATTTCTCAAGACGGAATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

409

Amino Acids

46.13

Weight (kDa)

6.8

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	85 - 358	8.1e-44	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	86 - 357	4e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26290
fragaria_vesca	FvH4_2g30840 FvH4_2g30840
malus_domestica	MD08G1073100.v1.1 MD15G1048500.v1.1
prunus_persica	Prupe.1G402700_v2.0.a1
pyrus_communis	pycom15g04730
rosa_chinensis	RchiOBHm_Chr6g0312011
rosa_laevigata	RLG00000010361
rosa_roxburghii	Rroxscaffold_7G00157140
rosa_rugosa	Rorug06G0392000 Rorug06G0392000 Rorug06G0392100 Rorug06G0392100 Rorug06G0392200
rosa_samantha	Rh6AG508600 Rh6BG519900 Rh6CG525800 Rh6DG511300
rosa_wichuraiana	Rw6G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	545
AccI	GTMKAC	3 cut(s)	486, 663, 748
AciI	CCGC	2 cut(s)	543, 880
AclWI	GGATC	1 cut(s)	959
AcsI	RAATTY	1 cut(s)	1202
AcuI	CTGAAG	3 cut(s)	511, 947, 1073
AdeI	CACNNNGTG	1 cut(s)	1142
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	967, 990, 1047
AflII	CTTAAG	1 cut(s)	784
AflIII	ACRYGT	2 cut(s)	733, 743
AgsI	TTSAA	6 cut(s)	331, 361, 377, 643, 651, 1099
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	319, 1046
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
Alw26I	GTCTC	2 cut(s)	1089, 1167
AlwI	GGATC	1 cut(s)	959
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	7 cut(s)	190, 317, 379, 592, 620, 917, 1049
ApeKI	GCWGC	3 cut(s)	118, 770, 1004
ApoI	RAATTY	1 cut(s)	1202
Asp700I	GAANNNNTTC	1 cut(s)	535
AspS9I	GGNCC	4 cut(s)	281, 592, 713, 931
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	281, 713, 931
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	130, 782, 1016
BccI	CCATC	2 cut(s)	362, 704
BcgI	CGANNNNNNTGC	2 cut(s)	879, 913
BciT130I	CCWGG	2 cut(s)	321, 1048
BcoDI	GTCTC	2 cut(s)	1089, 1167
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	4 cut(s)	63, 596, 752, 869
BfmI	CTRYAG	2 cut(s)	116, 342
BfrI	CTTAAG	1 cut(s)	784
BisI	GCNGC	4 cut(s)	119, 543, 771, 1005
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	4 cut(s)	120, 544, 772, 1006
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	321, 1048
Bme18I	GGWCC	3 cut(s)	281, 713, 931
BmgT120I	GGNCC	4 cut(s)	281, 592, 713, 931
BmiI	GGNNCC	3 cut(s)	583, 887, 933
BmrFI	CCNGG	2 cut(s)	321, 1048
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	3 cut(s)	744, 1048, 1193
BsaAI	YACGTR	1 cut(s)	746
BsaJI	CCNNGG	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	3 cut(s)	967, 990, 1047
Bse1I	ACTGG	2 cut(s)	41, 623
Bse3DI	GCAATG	1 cut(s)	1180
BseBI	CCWGG	2 cut(s)	321, 1048
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	3 cut(s)	373, 427, 715
BseLI	CCNNNNNNNGG	3 cut(s)	967, 990, 1047
BseMI	GCAATG	1 cut(s)	1180
BseMII	CTCAG	3 cut(s)	350, 413, 702
BseNI	ACTGG	2 cut(s)	41, 623
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	130, 782, 1016
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	7 cut(s)	192, 319, 381, 594, 622, 919, 1051
BsiSI	CCGG	2 cut(s)	189, 883
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	3 cut(s)	967, 990, 1047
BsmAI	GTCTC	2 cut(s)	1089, 1167
BsmFI	GGGAC	1 cut(s)	987
BsnI	GGCC	7 cut(s)	192, 319, 381, 594, 622, 919, 1051
Bsp143I	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
Bsp1720I	GCTNAGC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	2 cut(s)	543, 880
BspANI	GGCC	7 cut(s)	192, 319, 381, 594, 622, 919, 1051
BspCNI	CTCAG	3 cut(s)	349, 414, 701
BspLI	GGNNCC	3 cut(s)	583, 887, 933
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	959
BspQI	GCTCTTC	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	784
BsrBI	CCGCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	1180
BsrI	ACTGG	2 cut(s)	41, 623
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
BssNAI	GTATAC	2 cut(s)	487, 749
BssT1I	CCWWGG	1 cut(s)	551
Bst1107I	GTATAC	2 cut(s)	487, 749
Bst2UI	CCWGG	2 cut(s)	321, 1048
Bst6I	CTCTTC	4 cut(s)	459, 530, 552, 1092
BstAFI	CTTAAG	1 cut(s)	784
BstBAI	YACGTR	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	396, 1024
BstDEI	CTNAG	5 cut(s)	314, 336, 422, 588, 688
BstDSI	CCRYGG	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	373, 427, 715
BstKTI	GATC	6 cut(s)	172, 450, 520, 616, 954, 1077
BstMAI	GTCTC	2 cut(s)	1089, 1167
BstMBI	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 156, 220, 378, 581, 1001, 1013
BstNI	CCWGG	2 cut(s)	321, 1048
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	319, 1046
BstSFI	CTRYAG	2 cut(s)	116, 342
BstV1I	GCAGC	3 cut(s)	130, 782, 1016
BstZ17I	GTATAC	2 cut(s)	487, 749
BsuRI	GGCC	7 cut(s)	192, 319, 381, 594, 622, 919, 1051
BtgI	CCRYGG	1 cut(s)	551
BtgZI	GCGATG	2 cut(s)	828, 1173
BtsCI	GGATG	3 cut(s)	373, 427, 715
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	396, 1024
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr13I	GGNCC	4 cut(s)	281, 592, 713, 931
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	7 cut(s)	24, 133, 203, 249, 552, 608, 734
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	5 cut(s)	314, 336, 422, 588, 688
DpnI	GATC	6 cut(s)	171, 449, 519, 615, 953, 1076
DpnII	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
DraIII	CACNNNGTG	1 cut(s)	1142
Eam1104I	CTCTTC	4 cut(s)	459, 530, 552, 1092
EarI	CTCTTC	4 cut(s)	459, 530, 552, 1092
Eco130I	CCWWGG	1 cut(s)	551
Eco147I	AGGCCT	3 cut(s)	319, 919, 1051
Eco47I	GGWCC	3 cut(s)	281, 713, 931
Eco57I	CTGAAG	3 cut(s)	511, 947, 1073
EcoO109I	RGGNCCY	2 cut(s)	592, 931
EcoRII	CCWGG	2 cut(s)	319, 1046
EcoT14I	CCWWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	7 cut(s)	27, 136, 206, 252, 555, 611, 737
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	7 cut(s)	23, 132, 202, 248, 551, 607, 733
FauI	CCCGC	1 cut(s)	887
FblI	GTMKAC	3 cut(s)	486, 663, 748
Fnu4HI	GCNGC	4 cut(s)	119, 543, 771, 1005
FokI	GGATG	3 cut(s)	380, 414, 722
Fsp4HI	GCNGC	4 cut(s)	119, 543, 771, 1005
FspBI	CTAG	4 cut(s)	63, 596, 752, 869
GluI	GCNGC	4 cut(s)	119, 543, 771, 1005
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	7 cut(s)	192, 319, 381, 594, 622, 919, 1051
HapII	CCGG	2 cut(s)	189, 883
Hin1II	CATG	7 cut(s)	27, 136, 206, 252, 555, 611, 737
HincII	GTYRAC	3 cut(s)	304, 558, 852
HindII	GTYRAC	3 cut(s)	304, 558, 852
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	4 cut(s)	77, 665, 1082, 1095
HpaII	CCGG	2 cut(s)	189, 883
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	7 cut(s)	289, 304, 487, 558, 664, 749, 852
Hpy188I	TCNGA	7 cut(s)	139, 220, 452, 530, 635, 670, 691
Hpy188III	TCNNGA	2 cut(s)	716, 1210
Hpy8I	GTNNAC	7 cut(s)	289, 304, 487, 558, 664, 749, 852
HpyAV	CCTTC	6 cut(s)	7, 263, 325, 610, 713, 922
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	7 cut(s)	33, 74, 118, 164, 233, 770, 1185
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 156, 220, 378, 581, 1001, 1013
HpyF3I	CTNAG	5 cut(s)	314, 336, 422, 588, 688
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	7 cut(s)	27, 136, 206, 252, 555, 611, 737
Kzo9I	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	4 cut(s)	220, 469, 581, 885
Lsp1109I	GCAGC	3 cut(s)	130, 782, 1016
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	4 cut(s)	63, 596, 752, 869
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	3 cut(s)	739, 794, 864
MalI	GATC	6 cut(s)	171, 449, 519, 615, 953, 1076
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
MluCI	AATT	6 cut(s)	144, 178, 256, 1110, 1202, 1217
MlyI	GAGTC	2 cut(s)	659, 1091
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	417, 460, 497, 595, 614, 930, 964, 1205
Mph1103I	ATGCAT	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	5 cut(s)	225, 441, 785, 800, 1109
MslI	CAYNNNNRTG	1 cut(s)	28
MspA1I	CMGCKG	1 cut(s)	421
MspCI	CTTAAG	1 cut(s)	784
MspI	CCGG	2 cut(s)	189, 883
MspR9I	CCNGG	2 cut(s)	321, 1048
MvaI	CCWGG	2 cut(s)	321, 1048
MwoI	GCNNNNNNNGC	7 cut(s)	124, 156, 220, 378, 581, 1001, 1013
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
NlaIII	CATG	7 cut(s)	27, 136, 206, 252, 555, 611, 737
NlaIV	GGNNCC	3 cut(s)	583, 887, 933
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	2 cut(s)	794, 864
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	1 cut(s)	737
PceI	AGGCCT	3 cut(s)	319, 919, 1051
PciI	ACATGT	1 cut(s)	733
PciSI	GCTCTTC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	77, 1095
PkrI	GCNGC	4 cut(s)	120, 544, 772, 1006
PleI	GAGTC	2 cut(s)	659, 1090
PpsI	GAGTC	2 cut(s)	659, 1090
Ppu21I	YACGTR	1 cut(s)	746
PpuMI	RGGWCCY	1 cut(s)	931
PscI	ACATGT	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	931
Psp6I	CCWGG	2 cut(s)	319, 1046
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	319, 1046
PspN4I	GGNNCC	3 cut(s)	583, 887, 933
PspPI	GGNCC	4 cut(s)	281, 592, 713, 931
PspPPI	RGGWCCY	1 cut(s)	931
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	225, 441, 785, 800, 1109
SatI	GCNGC	4 cut(s)	119, 543, 771, 1005
Sau3AI	GATC	6 cut(s)	169, 447, 517, 613, 951, 1074
Sau96I	GGNCC	4 cut(s)	281, 592, 713, 931
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	2 cut(s)	659, 1091
ScrFI	CCNGG	2 cut(s)	321, 1048
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	116, 342
SinI	GGWCC	3 cut(s)	281, 713, 931
SmiMI	CAYNNNNRTG	1 cut(s)	28
SmlI	CTYRAG	4 cut(s)	759, 784, 1027, 1208
SmoI	CTYRAG	4 cut(s)	759, 784, 1027, 1208
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	6 cut(s)	144, 178, 256, 1110, 1202, 1217
SseBI	AGGCCT	3 cut(s)	319, 919, 1051
SsiI	CCGC	2 cut(s)	543, 880
SspI	AATATT	2 cut(s)	436, 980
SspMI	CTAG	4 cut(s)	63, 596, 752, 869
StuI	AGGCCT	3 cut(s)	319, 919, 1051
StyD4I	CCNGG	2 cut(s)	319, 1046
StyI	CCWWGG	1 cut(s)	551
TaiI	ACGT	1 cut(s)	748
TaqII	GACCGA	1 cut(s)	1076
TasI	AATT	6 cut(s)	144, 178, 256, 1110, 1202, 1217
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	77, 1095
Tru1I	TTAA	5 cut(s)	225, 441, 785, 800, 1109
Tru9I	TTAA	5 cut(s)	225, 441, 785, 800, 1109
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	794, 864
TseI	GCWGC	3 cut(s)	118, 770, 1004
Tsp45I	GTSAC	2 cut(s)	794, 864
TspDTI	ATGAA	5 cut(s)	191, 237, 581, 624, 1176
TspRI	CASTG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	784
VpaK11BI	GGWCC	3 cut(s)	281, 713, 931
XapI	RAATTY	1 cut(s)	1202
XceI	RCATGY	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmiI	GTMKAC	3 cut(s)	486, 663, 748
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	4 cut(s)	63, 596, 752, 869
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.