Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010717

Physical Location & Seq

Genomic Coordinates Forward (+)

53746997 .. 53753060

Gene Structure 6064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0392100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2838 bp

ATGGATTCTCCTGATTTCACCAAAACCAAAGCCAAAGCCACAGCCTCACCCTCATCCGGCTCTCCTCCAGTTCAAGAGTCGCCTATTTTTAGTTTTATCAACAATTTGTCCCCAATAAAGACTGTGAAGGCTACACATATAGCACCAGGGTTCCCCGGACTTAGCTCTCCTCCTCTTGTGTTTACATCACCACGAGTAAATCCATACACTGAGACGAGTTTCCTAAAGAGGCGGTCTCAACACTCAGAATTATCCTGTGCAGGAATACCTAAAACTCATGGTGAAGGCAAAGAGTTTGCTGATAGTGCAGCGGACCCTGTGAAACCTTTGACACAATTGCAGTTGGGCTTGATTACTGACACTAGAGACTGCAAGACCAAAAATTTTGTGGAAACTCATCCCTGTAGCTCCTCAGGGTTTGTAGATGAATACTTGGCTGATTCCACTGAGGTGGACTGTGCGAATTCTGATCAATCAGTCAATCCACATTTGGAACATTCTAGCAGTGTGCTGGAGCCATCAAGAAGTGGCTTAATCAAGTCCAAGGAACTCACATTAACACTTGGCAACAGAAATGATAATGCAACCAACTCAAGAACGGAAGCTCAGGCACCTTTTATGACATCGGAGCAGGCTCACGAGTACAATCAAGGAAAGCAAACATTTATTGCAAAGTTGACAAGGAGTGAAAAGCAAAGGAATGATGAATTACGATTTAACGAATGCACAAATATCGAATCTGGTTTATCTGTTGACAATGCTTTCAGGAGAGAATATCACCAAGAATTTCTTGATCGGTTACAGGGTCTAAGAGGTGAACATCAGGATGATTATGATTACTGCCCTCAATCTCTAGCTGGAGCTTTGCATAATGGTCAGGTGTATGAAGATGAGAATGCTGGTTCAATTCCAAATAGACTGATTGAAAACGCTGTAATGCATGCTTCTAAGAGACGTTGCCTTCGGTTTGAAGAGGCTCCTTGTACTAGTGGCAAAGGGGACGGTTCTTTGAGTCTTTCAGAGAAGGTTAGCAATTCAGAACCACCTACCAGCACTGTAGAATCAGAGATGGTGGAATCACCTTATGTGGACTTAATAACTTCTACGAAGACACAGACGGCAGCCTCATTGCCACCTCGGAGTACTGGAAAATCTCGTTTAACTGTTTCTAAGCCATCCGGTATTGGCTTGCATTTAAACAGTATTGTCAATGCTGCATCAGTGGTTCGTGGTGCAACAAGCATAAAATTAGCAGACCGCTACATGGGTGTGCAAGTTATGAACTCAGCATCTATTAATGTAAGGCGCTGTCCTAATTCATTGAATGTGGTTGAGAAAGATTCTGCTGGTGGTGTAGACTGGAGGAATGAAACTGAGACTTCAGTTGCTGCAAGTTCTGCCACTACCCAGTCTCCCCACTCTGTGGAATTTGAGCATCATGGGCCTATACATGAGATTAGGATATCTGATTCTCACAGTATAGACAGTTACGAAGAGTGCAACCAATCTAGCCCAAACACGAAGAGGAAAAGAGCATCGAGAAATATTGATAGTGATGGGTGTAAGCGCTGCAACTGCAGGAAGACCAAATGCTTGAAACTTTATTGTGATTGTTTTTCTGCTGGAATCTATTGTGACACAACTTGTGCTTGCCAAGAGTGCTTTAACAGACCCGAGTATGAAGATACGGTTCTTGAGACAAGACAAAAAATAGAATCCCGTAACCCTCTTGCATTTGCTCCCAAGGTTGTAGAGCGTGAAGATGAGAATCAATTCACACCAGCCTCGGCAAGACATAAAAGAGGGTGCAATTGCAAAAAGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTAGGATGCTCCAATGGATGCCGGTGTGAAGGATGTCAAAATGCTTATGGCAAGAGGGGAGAGTTTGTTGACGTGGATTCTGGTGTGTCCGAAGAAGTGATTACTGACAAAGATGGCACGGAAATAAGAGAAAGCACATTTGATGAGAAGCTGCAAATGGTGGCAACAAGGAAAGATTCAAATGATTCACCCAGCCTCACTCCGTTGACACCATCATTGCAATGCTTTGATGATACACATAATGTATCAAAATCCAGGGTCCTTCCGGCAATATGCCGTCCATCTCCTCAATCAGCTCTTACCATCATATCACATCACAAAAATTCAACAAGATCTCCTCAGAGAAATTCAGAGAACAGTGACAATCTTATGGACACAAGTAAAGGATTGTTGGACGTGGGTTCTTATGATTGGCAAGAGGATTACGAGAACATTGGTTTGGAGACTACTTCACCAAGATGCTATGCAGTCCCCACTACATGCCATCTTACTCCACTGTCCGGTCCTGGGTCATTGGCCATAACTTCTTCAGCATCATTGACAACAAGGGATTTGACAAATGCTTCACAAGTTCAGCTGTGCCCTGGAAGTCACTGTCTCTTGTCAGGTAGTTCTCTTCATTGGCATAGTTCACCAGTCACCCCAATGCATCGGTTCGGTGGGATGAAATCATTTCAAGGTTTTGACTCTGAAAAGAGCCATCACGACCTCCTGCAAGATGATACACCTGAGATATTGAAGGACACTTCTATCCCCATCAAGTCGGTGAAAGTGAGCTCCCCAAATAAGAAGCGTGTTTCTCCTCCTCACAGCCACAATCATGAGCTTGGTACAAGCTCTTCAGGGGGCTTGAGAAGTGGCCGCAAGTTCATACTGAAGGCTGTGCCTTCTTTTCCACCTCTTACCCCTTGTATTGGTTCAAAAGGTAGTAGTACCATTCAGAACATGAATAATCCTCTTCAAGATAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

945

Amino Acids

103.42

Weight (kDa)

6.47

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCR	PF03638	522 - 557	2e-10	Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR	PF03638	600 - 636	8e-11	Tesmin/TSO1-like CXC domain, cysteine-rich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26290
fragaria_vesca	FvH4_2g30840 FvH4_2g30840
malus_domestica	MD08G1073100.v1.1 MD15G1048500.v1.1
prunus_persica	Prupe.1G402700_v2.0.a1
pyrus_communis	pycom15g04730
rosa_chinensis	RchiOBHm_Chr6g0312011
rosa_laevigata	RLG00000010361
rosa_roxburghii	Rroxscaffold_7G00157140
rosa_rugosa	Rorug06G0392000 Rorug06G0392000 Rorug06G0392100 Rorug06G0392100 Rorug06G0392200
rosa_samantha	Rh6AG508600 Rh6BG519900 Rh6CG525800 Rh6DG511300
rosa_wichuraiana	Rw6G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	1423
AccI	GTMKAC	1 cut(s)	1356
AciI	CCGC	4 cut(s)	232, 311, 1258, 2725
AcoI	YGGCCR	2 cut(s)	2379, 2722
AcsI	RAATTY	6 cut(s)	382, 463, 785, 1427, 2185, 2209
AcuI	CTGAAG	4 cut(s)	1365, 2376, 2688, 2759
AdeI	CACNNNGTG	1 cut(s)	1423
AfaI	GTAC	5 cut(s)	644, 985, 1144, 2695, 2797
AfeI	AGCGCT	1 cut(s)	1568
AfiI	CCNNNNNNNGG	6 cut(s)	56, 1264, 1423, 2363, 2370, 2777
AhlI	ACTAGT	1 cut(s)	986
AjiI	CACGTC	2 cut(s)	1936, 2260
AjnI	CCWGG	4 cut(s)	145, 2117, 2368, 2446
AjuI	GAANNNNNNNTTGG	2 cut(s)	2285, 2317
AleI	CACNNNNGTG	1 cut(s)	449
Alw21I	GWGCWC	1 cut(s)	2642
Alw26I	GTCTC	9 cut(s)	206, 240, 360, 946, 1370, 1416, 1691, 2300, 2465
AlwNI	CAGNNNCTG	1 cut(s)	1388
Ama87I	CYCGRG	1 cut(s)	1673
Aor51HI	AGCGCT	1 cut(s)	1568
AoxI	GGCC	3 cut(s)	1442, 2379, 2722
ApeKI	GCWGC	6 cut(s)	308, 1121, 1214, 1388, 1569, 2014
ApoI	RAATTY	6 cut(s)	382, 463, 785, 1427, 2185, 2209
ArsI	GACNNNNNNTTYG	2 cut(s)	945, 977
AseI	ATTAAT	1 cut(s)	1296
Asp700I	GAANNNNTTC	1 cut(s)	1772
AspLEI	GCGC	2 cut(s)	1308, 1569
AspS9I	GGNCC	4 cut(s)	313, 1442, 2122, 2366
AsuC2I	CCSGG	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	1673
AvaII	GGWCC	3 cut(s)	313, 2122, 2366
AxyI	CCTNAGG	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	2447
BalI	TGGCCA	1 cut(s)	2381
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	2642
BarI	GAAGNNNNNNTAC	2 cut(s)	2686, 2718
BauI	CACGAG	2 cut(s)	192, 638
BbsI	GAAGAC	2 cut(s)	1115, 1589
Bbv12I	GWGCWC	1 cut(s)	2642
BbvI	GCAGC	6 cut(s)	320, 1133, 1201, 1375, 1556, 2001
BceAI	ACGGC	2 cut(s)	1134, 2124
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BciT130I	CCWGG	4 cut(s)	147, 2119, 2370, 2448
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	9 cut(s)	206, 240, 360, 946, 1370, 1416, 1691, 2300, 2465
BcuI	ACTAGT	1 cut(s)	986
BfaI	CTAG	5 cut(s)	363, 501, 854, 987, 1509
BfmI	CTRYAG	3 cut(s)	403, 1056, 1576
BfoI	RGCGCY	2 cut(s)	1309, 1570
BglII	AGATCT	1 cut(s)	2195
BisI	GCNGC	7 cut(s)	309, 1122, 1215, 1389, 1570, 2015, 2725
BlsI	GCNGC	7 cut(s)	310, 1123, 1216, 1390, 1571, 2016, 2726
BmcAI	AGTACT	1 cut(s)	1144
Bme1390I	CCNGG	5 cut(s)	147, 156, 2119, 2370, 2448
Bme18I	GGWCC	3 cut(s)	313, 2122, 2366
BmeT110I	CYCGRG	1 cut(s)	1673
BmgBI	CACGTC	2 cut(s)	1936, 2260
BmgT120I	GGNCC	4 cut(s)	313, 1442, 2122, 2366
BmiI	GGNNCC	6 cut(s)	152, 315, 516, 612, 978, 2123
BmrFI	CCNGG	5 cut(s)	147, 156, 2119, 2370, 2448
BmrI	ACTGGG	1 cut(s)	1402
BmsI	GCATC	9 cut(s)	1226, 1298, 1444, 1544, 1859, 1871, 2312, 2405, 2521
BmuI	ACTGGG	1 cut(s)	1402
BpiI	GAAGAC	2 cut(s)	1115, 1589
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BpmI	CTGGAG	4 cut(s)	51, 533, 879, 1381
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	3 cut(s)	577, 1715, 2734
BpuMI	CCSGG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	1767
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	9 cut(s)	146, 154, 543, 1136, 1743, 1785, 2118, 2369, 2446
BsaWI	WCCGGW	2 cut(s)	1178, 2363
BsaXI	ACNNNNNCTCC	6 cut(s)	1396, 1426, 1914, 1944, 2182, 2212
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 1264, 1423, 2363, 2370, 2777
Bse118I	RCCGGY	1 cut(s)	1884
Bse1I	ACTGG	5 cut(s)	68, 1150, 1364, 1408, 2498
Bse21I	CCTNAGG	1 cut(s)	412
Bse3DI	GCAATG	3 cut(s)	1127, 2078, 2090
Bse8I	GATNNNNATC	1 cut(s)	1767
BseBI	CCWGG	4 cut(s)	147, 2119, 2370, 2448
BseDI	CCNNGG	9 cut(s)	146, 154, 543, 1136, 1743, 1785, 2118, 2369, 2446
BseGI	GGATG	8 cut(s)	53, 397, 832, 1175, 1874, 1886, 1901, 2532
BseJI	GATNNNNATC	1 cut(s)	1767
BseLI	CCNNNNNNNGG	6 cut(s)	56, 1264, 1423, 2363, 2370, 2777
BseMI	GCAATG	3 cut(s)	1127, 2078, 2090
BseMII	CTCAG	9 cut(s)	201, 258, 426, 438, 620, 1299, 1365, 2216, 2583
BseNI	ACTGG	5 cut(s)	68, 1150, 1364, 1408, 2498
BseRI	GAGGAG	8 cut(s)	54, 159, 162, 400, 2139, 2190, 2655, 2658
BseSI	GKGCMC	1 cut(s)	2447
BseXI	GCAGC	6 cut(s)	320, 1133, 1201, 1375, 1556, 2001
BseYI	CCCAGC	1 cut(s)	2054
BsgI	GTGCAG	2 cut(s)	279, 327
BshFI	GGCC	3 cut(s)	1444, 2381, 2724
BshNI	GGYRCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	2642
BsiHKCI	CYCGRG	1 cut(s)	1673
BsiSI	CCGG	6 cut(s)	57, 156, 1179, 1885, 2129, 2364
BslFI	GGGAC	3 cut(s)	94, 1013, 2318
BslI	CCNNNNNNNGG	6 cut(s)	56, 1264, 1423, 2363, 2370, 2777
BsmAI	GTCTC	9 cut(s)	206, 240, 360, 946, 1370, 1416, 1691, 2300, 2465
BsmBI	CGTCTC	2 cut(s)	206, 946
BsmFI	GGGAC	3 cut(s)	94, 1013, 2318
BsmI	GAATGC	2 cut(s)	728, 901
BsnI	GGCC	3 cut(s)	1444, 2381, 2724
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	1673
Bsp1286I	GDGCHC	2 cut(s)	2447, 2642
Bsp143I	GATC	3 cut(s)	469, 793, 2195
BspACI	CCGC	4 cut(s)	232, 311, 1258, 2725
BspANI	GGCC	3 cut(s)	1444, 2381, 2724
BspCNI	CTCAG	9 cut(s)	202, 257, 425, 439, 619, 1298, 1366, 2215, 2584
BspHI	TCATGA	1 cut(s)	2683
BspLI	GGNNCC	6 cut(s)	152, 315, 516, 612, 978, 2123
BspMAI	CTGCAG	1 cut(s)	1580
BspQI	GCTCTTC	1 cut(s)	2707
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	1 cut(s)	240
BsrDI	GCAATG	3 cut(s)	1127, 2078, 2090
BsrFI	RCCGGY	1 cut(s)	1884
BsrI	ACTGG	5 cut(s)	68, 1150, 1364, 1408, 2498
BssAI	RCCGGY	1 cut(s)	1884
BssECI	CCNNGG	9 cut(s)	146, 154, 543, 1136, 1743, 1785, 2118, 2369, 2446
BssMI	GATC	3 cut(s)	469, 793, 2195
BssSI	CACGAG	2 cut(s)	192, 638
BssT1I	CCWWGG	2 cut(s)	543, 1743
Bst2BI	CACGAG	2 cut(s)	192, 638
Bst2UI	CCWGG	4 cut(s)	147, 2119, 2370, 2448
Bst6I	CTCTTC	6 cut(s)	966, 1488, 1517, 2484, 2707, 2826
BstAPI	GCANNNNNTGC	1 cut(s)	1397
BstC8I	GCNNGC	4 cut(s)	633, 942, 1190, 1651
BstF5I	GGATG	8 cut(s)	53, 397, 832, 1175, 1874, 1886, 1901, 2532
BstH2I	RGCGCY	2 cut(s)	1309, 1570
BstHHI	GCGC	2 cut(s)	1308, 1569
BstKTI	GATC	3 cut(s)	472, 796, 2198
BstMAI	GTCTC	9 cut(s)	206, 240, 360, 946, 1370, 1416, 1691, 2300, 2465
BstMBI	GATC	3 cut(s)	469, 793, 2195
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 1397, 1441, 1575, 1659
BstNI	CCWGG	4 cut(s)	147, 2119, 2370, 2448
BstNSI	RCATGY	2 cut(s)	944, 2346
BstSCI	CCNGG	5 cut(s)	145, 154, 2117, 2368, 2446
BstSFI	CTRYAG	3 cut(s)	403, 1056, 1576
BstSLI	GKGCMC	1 cut(s)	2447
BstV1I	GCAGC	6 cut(s)	320, 1133, 1201, 1375, 1556, 2001
BstV2I	GAAGAC	2 cut(s)	1115, 1589
BstX2I	RGATCY	1 cut(s)	2195
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	2195
Bsu36I	CCTNAGG	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	1444, 2381, 2724
BtrI	CACGTC	2 cut(s)	1936, 2260
BtsCI	GGATG	8 cut(s)	53, 397, 832, 1175, 1874, 1886, 1901, 2532
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	8 cut(s)	207, 444, 511, 1053, 1227, 2227, 2357, 2455
Cac8I	GCNNGC	4 cut(s)	633, 942, 1190, 1651
CaiI	CAGNNNCTG	1 cut(s)	1388
CciI	TCATGA	1 cut(s)	2683
CfoI	GCGC	2 cut(s)	1308, 1569
Cfr10I	RCCGGY	1 cut(s)	1884
Cfr13I	GGNCC	4 cut(s)	313, 1442, 2122, 2366
Csp6I	GTAC	5 cut(s)	643, 984, 1143, 2694, 2796
CviAII	CATG	8 cut(s)	278, 941, 1264, 1439, 1451, 2343, 2684, 2809
CviQI	GTAC	5 cut(s)	643, 984, 1143, 2694, 2796
DpnI	GATC	3 cut(s)	471, 795, 2197
DpnII	GATC	3 cut(s)	469, 793, 2195
DraI	TTTAAA	1 cut(s)	1197
DraIII	CACNNNGTG	1 cut(s)	1423
EaeI	YGGCCR	2 cut(s)	2379, 2722
Eam1104I	CTCTTC	6 cut(s)	966, 1488, 1517, 2484, 2707, 2826
EarI	CTCTTC	6 cut(s)	966, 1488, 1517, 2484, 2707, 2826
Ecl136II	GAGCTC	1 cut(s)	2640
Eco130I	CCWWGG	2 cut(s)	543, 1743
Eco24I	GRGCYC	1 cut(s)	2642
Eco31I	GGTCTC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	1464
Eco47I	GGWCC	3 cut(s)	313, 2122, 2366
Eco47III	AGCGCT	1 cut(s)	1568
Eco53kI	GAGCTC	1 cut(s)	2640
Eco57I	CTGAAG	4 cut(s)	1365, 2376, 2688, 2759
Eco81I	CCTNAGG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	1673
EcoICRI	GAGCTC	1 cut(s)	2640
EcoO109I	RGGNCCY	1 cut(s)	2122
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	4 cut(s)	145, 2117, 2368, 2446
EcoRV	GATATC	1 cut(s)	1464
EcoT14I	CCWWGG	2 cut(s)	543, 1743
EcoT22I	ATGCAT	2 cut(s)	942, 2514
EcoT38I	GRGCYC	1 cut(s)	2642
ErhI	CCWWGG	2 cut(s)	543, 1743
Esp3I	CGTCTC	2 cut(s)	206, 946
FaeI	CATG	8 cut(s)	281, 944, 1267, 1442, 1454, 2346, 2687, 2812
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	3 cut(s)	94, 1013, 2318
FatI	CATG	8 cut(s)	277, 940, 1263, 1438, 1450, 2342, 2683, 2808
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	1356
Fnu4HI	GCNGC	7 cut(s)	309, 1122, 1215, 1389, 1570, 2015, 2725
FokI	GGATG	8 cut(s)	40, 384, 839, 1162, 1881, 1893, 1908, 2539
FriOI	GRGCYC	1 cut(s)	2642
Fsp4HI	GCNGC	7 cut(s)	309, 1122, 1215, 1389, 1570, 2015, 2725
FspBI	CTAG	5 cut(s)	363, 501, 854, 987, 1509
GlaI	GCGC	2 cut(s)	1307, 1568
GluI	GCNGC	7 cut(s)	309, 1122, 1215, 1389, 1570, 2015, 2725
GsaI	CCCAGC	1 cut(s)	2058
GsuI	CTGGAG	4 cut(s)	51, 533, 879, 1381
HaeII	RGCGCY	2 cut(s)	1309, 1570
HaeIII	GGCC	3 cut(s)	1444, 2381, 2724
HapII	CCGG	6 cut(s)	57, 156, 1179, 1885, 2129, 2364
HhaI	GCGC	2 cut(s)	1308, 1569
Hin1II	CATG	8 cut(s)	281, 944, 1267, 1442, 1454, 2346, 2687, 2812
Hin6I	GCGC	2 cut(s)	1306, 1567
HinP1I	GCGC	2 cut(s)	1306, 1567
HincII	GTYRAC	4 cut(s)	678, 754, 1933, 2070
HindII	GTYRAC	4 cut(s)	678, 754, 1933, 2070
HpaII	CCGG	6 cut(s)	57, 156, 1179, 1885, 2129, 2364
HpyAV	CCTTC	9 cut(s)	121, 278, 971, 1018, 1886, 2135, 2596, 2734, 2760
HpyCH4IV	ACGT	3 cut(s)	955, 1935, 2259
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 1397, 1441, 1575, 1659
HpySE526I	ACGT	3 cut(s)	955, 1935, 2259
Hsp92II	CATG	8 cut(s)	281, 944, 1267, 1442, 1454, 2346, 2687, 2812
HspAI	GCGC	2 cut(s)	1306, 1567
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	469, 793, 2195
LguI	GCTCTTC	1 cut(s)	2707
LmnI	GCTCC	8 cut(s)	413, 514, 628, 860, 982, 1744, 1877, 2645
Lsp1109I	GCAGC	6 cut(s)	320, 1133, 1201, 1375, 1556, 2001
LweI	GCATC	9 cut(s)	1226, 1298, 1444, 1544, 1859, 1871, 2312, 2405, 2521
MaeI	CTAG	5 cut(s)	363, 501, 854, 987, 1509
MaeII	ACGT	3 cut(s)	955, 1935, 2259
MaeIII	GTNAC	7 cut(s)	798, 1487, 1634, 1721, 2222, 2453, 2500
MalI	GATC	3 cut(s)	471, 795, 2197
MboI	GATC	3 cut(s)	469, 793, 2195
MfeI	CAATTG	2 cut(s)	335, 1810
MflI	RGATCY	1 cut(s)	2195
MhlI	GDGCHC	2 cut(s)	2447, 2642
MlsI	TGGCCA	1 cut(s)	2381
MluNI	TGGCCA	1 cut(s)	2381
MlyI	GAGTC	3 cut(s)	86, 1021, 2543
MmeI	TCCRAC	1 cut(s)	2235
Mox20I	TGGCCA	1 cut(s)	2381
Mph1103I	ATGCAT	2 cut(s)	942, 2514
MroXI	GAANNNNTTC	1 cut(s)	1772
MscI	TGGCCA	1 cut(s)	2381
MseI	TTAA	8 cut(s)	533, 557, 717, 1094, 1160, 1196, 1296, 1665
MslI	CAYNNNNRTG	7 cut(s)	449, 825, 1268, 2083, 2320, 2507, 2682
Msp20I	TGGCCA	1 cut(s)	2381
MspA1I	CMGCKG	2 cut(s)	311, 2440
MspI	CCGG	6 cut(s)	57, 156, 1179, 1885, 2129, 2364
MspR9I	CCNGG	5 cut(s)	147, 156, 2119, 2370, 2448
MunI	CAATTG	2 cut(s)	335, 1810
Mva1269I	GAATGC	2 cut(s)	728, 901
MvaI	CCWGG	4 cut(s)	147, 2119, 2370, 2448
MwoI	GCNNNNNNNGC	5 cut(s)	305, 1397, 1441, 1575, 1659
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	469, 793, 2195
NlaIII	CATG	8 cut(s)	281, 944, 1267, 1442, 1454, 2346, 2687, 2812
NlaIV	GGNNCC	6 cut(s)	152, 315, 516, 612, 978, 2123
NmeAIII	GCCGAG	1 cut(s)	1766
NmuCI	GTSAC	4 cut(s)	1634, 2222, 2453, 2500
NsiI	ATGCAT	2 cut(s)	942, 2514
NspI	RCATGY	2 cut(s)	944, 2346
OliI	CACNNNNGTG	1 cut(s)	449
PaeI	GCATGC	1 cut(s)	944
PagI	TCATGA	1 cut(s)	2683
PciSI	GCTCTTC	1 cut(s)	2707
PctI	GAATGC	2 cut(s)	728, 901
PdmI	GAANNNNTTC	1 cut(s)	1772
PflMI	CCANNNNNTGG	1 cut(s)	1423
PkrI	GCNGC	7 cut(s)	310, 1123, 1216, 1390, 1571, 2016, 2726
PleI	GAGTC	3 cut(s)	85, 1020, 2543
PpsI	GAGTC	3 cut(s)	85, 1020, 2543
PpuMI	RGGWCCY	1 cut(s)	2122
PshBI	ATTAAT	1 cut(s)	1296
Psp124BI	GAGCTC	1 cut(s)	2642
Psp5II	RGGWCCY	1 cut(s)	2122
Psp6I	CCWGG	4 cut(s)	145, 2117, 2368, 2446
PspFI	CCCAGC	1 cut(s)	2054
PspGI	CCWGG	4 cut(s)	145, 2117, 2368, 2446
PspN4I	GGNNCC	6 cut(s)	152, 315, 516, 612, 978, 2123
PspPI	GGNCC	4 cut(s)	313, 1442, 2122, 2366
PspPPI	RGGWCCY	1 cut(s)	2122
PstI	CTGCAG	1 cut(s)	1580
PstNI	CAGNNNCTG	1 cut(s)	1388
PsuI	RGATCY	1 cut(s)	2195
PvuII	CAGCTG	1 cut(s)	2440
RsaI	GTAC	5 cut(s)	644, 985, 1144, 2695, 2797
RsaNI	GTAC	5 cut(s)	643, 984, 1143, 2694, 2796
RseI	CAYNNNNRTG	7 cut(s)	449, 825, 1268, 2083, 2320, 2507, 2682
SacI	GAGCTC	1 cut(s)	2642
SapI	GCTCTTC	1 cut(s)	2707
SaqAI	TTAA	8 cut(s)	533, 557, 717, 1094, 1160, 1196, 1296, 1665
SatI	GCNGC	7 cut(s)	309, 1122, 1215, 1389, 1570, 2015, 2725
Sau3AI	GATC	3 cut(s)	469, 793, 2195
Sau96I	GGNCC	4 cut(s)	313, 1442, 2122, 2366
ScaI	AGTACT	1 cut(s)	1144
SchI	GAGTC	3 cut(s)	86, 1021, 2543
ScrFI	CCNGG	5 cut(s)	147, 156, 2119, 2370, 2448
SduI	GDGCHC	2 cut(s)	2447, 2642
SfaNI	GCATC	9 cut(s)	1226, 1298, 1444, 1544, 1859, 1871, 2312, 2405, 2521
SfcI	CTRYAG	3 cut(s)	403, 1056, 1576
SinI	GGWCC	3 cut(s)	313, 2122, 2366
SmiMI	CAYNNNNRTG	7 cut(s)	449, 825, 1268, 2083, 2320, 2507, 2682
SmlI	CTYRAG	3 cut(s)	592, 1694, 2713
SmoI	CTYRAG	3 cut(s)	592, 1694, 2713
SpeI	ACTAGT	1 cut(s)	986
SphI	GCATGC	1 cut(s)	944
SsiI	CCGC	4 cut(s)	232, 311, 1258, 2725
SspI	AATATT	2 cut(s)	1546, 1841
SspMI	CTAG	5 cut(s)	363, 501, 854, 987, 1509
SstI	GAGCTC	1 cut(s)	2642
StyD4I	CCNGG	5 cut(s)	145, 154, 2117, 2368, 2446
StyI	CCWWGG	2 cut(s)	543, 1743
TaiI	ACGT	3 cut(s)	958, 1938, 2262
TaqI	TCGA	2 cut(s)	735, 1538
TatI	WGTACW	3 cut(s)	642, 983, 1142
TauI	GCSGC	1 cut(s)	2727
Tru1I	TTAA	8 cut(s)	533, 557, 717, 1094, 1160, 1196, 1296, 1665
Tru9I	TTAA	8 cut(s)	533, 557, 717, 1094, 1160, 1196, 1296, 1665
TscAI	CASTG	8 cut(s)	214, 451, 511, 1060, 1227, 2227, 2364, 2462
TseFI	GTSAC	4 cut(s)	1634, 2222, 2453, 2500
TseI	GCWGC	6 cut(s)	308, 1121, 1214, 1388, 1569, 2014
Tsp45I	GTSAC	4 cut(s)	1634, 2222, 2453, 2500
TspGWI	ACGGA	3 cut(s)	614, 1997, 2055
TspRI	CASTG	8 cut(s)	214, 451, 511, 1060, 1227, 2227, 2364, 2462
Van91I	CCANNNNNTGG	1 cut(s)	1423
VpaK11BI	GGWCC	3 cut(s)	313, 2122, 2366
VspI	ATTAAT	1 cut(s)	1296
XapI	RAATTY	6 cut(s)	382, 463, 785, 1427, 2185, 2209
XceI	RCATGY	2 cut(s)	944, 2346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	1356
XmnI	GAANNNNTTC	1 cut(s)	1772
XspI	CTAG	5 cut(s)	363, 501, 854, 987, 1509
ZrmI	AGTACT	1 cut(s)	1144
Zsp2I	ATGCAT	2 cut(s)	942, 2514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.