Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010717

Physical Location & Seq

Genomic Coordinates Reverse (-)

946896 .. 949439

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCTGCAAGGCGTTGGACGAAATTCCTCAAAGAACATTGGCAGAGTGCTCAAGCTATCTCACTGAGAAGATCTCATGGAAATGTATCCTCCCAGTCTGTTGTTCCAAAAGTAGTGATGCGGATTCCACAAGACAAGTTCAAGATAAGCGAACCCCTTTTCTGCAGCAAAGGCTCGGAGCTTAAAGTTGCAACAAACAACTTTTCATGGAGTAATTTGCTTGGTGAAGGCGGCTTTGGACCGGTTTACAAGGGGTTTGTTGATGACAATCTTAGGCCTGGAAAATTGAAGGCTCAGCCTGTAGCCGTCAAACTATTAGACTTGGATGGCTTTCAAGGCCATAGGGAGTGGCTGCTGCCAACTCTTCTAGTATTAATCGATCAGAGGCTTTTAGGATATTCTGCTGCTCTTCCATGGTCAACGAGAATGAAAATCGCAGTTGGGGCGGCTAAGGGCCTAGCCTTCCTGCACGAAGATCATAGGCCTGTCATATTCAGGGATTTTAAAACTTCAAATGTTCTGCTAGACTCTGATTATACAGCAAAACTTTCGGATTTTGGGTTAGCAAAGGATGGCCCAGAAGGAGAAGAAACTCATGTGGTAACACGTATACTAGGGACTCAAGGGTATGCAGCCCCTGAATACGTAAGGACAGGTCACTTAACAACCAAGAGCGATGTGTATAGCTTTGGAGTAGTTCTATTAGAGCTGTTGACAGGTAAAAGGTCACTAGACAGAACCCGCCGGAGCCGTGAACAATGCCTTGTAGAATGGGCAAGGCCTCTGTTGAAGGACCCAAGAAAGCTTAACCGGATCATAGACCCGAGATTGGAGGGACAGTATTCCAGCAAAGGGGCTAGAAAGGCAGCTACATTGGCTTACACTTGCTTGAGCAACAACCCGAAGTCGAGGCCTATGATGACGGATGTGGTTATGATCTTGGAGTCTCTTCAGGGCTTCAACGAAGCGTTAACCTATCAACCATTTGTTTATGTAGCCCCAAATGAAGAAAATGACTGCGATGAAGATAAGGGAAAGTACCATTGCGGATACACCCTAAAAGAAGCTCTCACGACGGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

362

Amino Acids

40.7

Weight (kDa)

9.18

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	134 - 312	1.7e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	141 - 311	5.1e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26290
fragaria_vesca	FvH4_2g30840 FvH4_2g30840
malus_domestica	MD08G1073100.v1.1 MD15G1048500.v1.1
prunus_persica	Prupe.1G402700_v2.0.a1
pyrus_communis	pycom15g04730
rosa_chinensis	RchiOBHm_Chr6g0312011
rosa_laevigata	RLG00000010361
rosa_roxburghii	Rroxscaffold_7G00157140
rosa_rugosa	Rorug06G0392000 Rorug06G0392000 Rorug06G0392100 Rorug06G0392100 Rorug06G0392200
rosa_samantha	Rh6AG508600 Rh6BG519900 Rh6CG525800 Rh6DG511300
rosa_wichuraiana	Rw6G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	610
AciI	CCGC	5 cut(s)	121, 231, 446, 742, 1047
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	1040
AfiI	CCNNNNNNNGG	2 cut(s)	829, 852
AflIII	ACRYGT	1 cut(s)	605
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	6 cut(s)	142, 289, 335, 513, 790, 961
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	7 cut(s)	56, 181, 687, 709, 805, 869, 1067
AluI	AGCT	7 cut(s)	56, 181, 687, 709, 805, 869, 1067
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	951
AlwI	GGATC	1 cut(s)	821
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	823
AoxI	GGCC	7 cut(s)	275, 337, 454, 482, 574, 779, 911
ApeKI	GCWGC	6 cut(s)	165, 352, 355, 404, 632, 866
ApoI	RAATTY	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	374
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	4 cut(s)	239, 454, 575, 793
AsuHPI	GGTGA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	239, 793
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	6 cut(s)	177, 339, 342, 391, 644, 878
BccI	CCATC	2 cut(s)	320, 566
BceAI	ACGGC	2 cut(s)	290, 735
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	2 cut(s)	97, 1043
BcoDI	GTCTC	1 cut(s)	951
BfaI	CTAG	6 cut(s)	368, 458, 524, 614, 731, 858
BfmI	CTRYAG	2 cut(s)	163, 300
BfuI	GTATCC	2 cut(s)	97, 1043
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	8 cut(s)	166, 232, 353, 356, 405, 447, 633, 867
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	8 cut(s)	167, 233, 354, 357, 406, 448, 634, 868
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	239, 793
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	4 cut(s)	239, 454, 575, 793
BmiI	GGNNCC	2 cut(s)	749, 795
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	3 cut(s)	36, 606, 910
Bsa29I	ATCGAT	1 cut(s)	378
BsaAI	YACGTR	2 cut(s)	608, 646
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	2 cut(s)	241, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	2 cut(s)	829, 852
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	1042
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	3 cut(s)	331, 577, 931
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	829, 852
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	2 cut(s)	56, 308
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	6 cut(s)	177, 339, 342, 391, 644, 878
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	7 cut(s)	277, 339, 456, 484, 576, 781, 913
BshTI	ACCGGT	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	3 cut(s)	242, 745, 811
BslFI	GGGAC	2 cut(s)	631, 849
BslI	CCNNNNNNNGG	2 cut(s)	829, 852
BsmAI	GTCTC	1 cut(s)	951
BsmFI	GGGAC	2 cut(s)	631, 849
BsnI	GGCC	7 cut(s)	277, 339, 456, 484, 576, 781, 913
BsoBI	CYCGRG	1 cut(s)	823
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	5 cut(s)	71, 379, 475, 813, 936
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	5 cut(s)	121, 231, 446, 742, 1047
BspANI	GGCC	7 cut(s)	277, 339, 456, 484, 576, 781, 913
BspCNI	CTCAG	2 cut(s)	57, 307
BspDI	ATCGAT	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	749, 795
BspMAI	CTGCAG	1 cut(s)	167
BspPI	GGATC	1 cut(s)	821
BspQI	GCTCTTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	1042
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	5 cut(s)	71, 379, 475, 813, 936
BssNAI	GTATAC	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	413
Bst1107I	GTATAC	1 cut(s)	611
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	840
Bst6I	CTCTTC	3 cut(s)	369, 414, 954
BstBAI	YACGTR	2 cut(s)	608, 646
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	65, 272, 294, 450
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	331, 577, 931
BstKTI	GATC	5 cut(s)	74, 382, 478, 816, 939
BstMAI	GTCTC	1 cut(s)	951
BstMBI	GATC	5 cut(s)	71, 379, 475, 813, 936
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 171, 336, 443, 863, 875
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	2 cut(s)	163, 300
BstSNI	TACGTA	1 cut(s)	646
BstV1I	GCAGC	6 cut(s)	177, 339, 342, 391, 644, 878
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	611
Bsu15I	ATCGAT	1 cut(s)	378
BsuI	GTATCC	2 cut(s)	97, 1043
BsuRI	GGCC	7 cut(s)	277, 339, 456, 484, 576, 781, 913
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	2 cut(s)	690, 1035
BtsCI	GGATG	3 cut(s)	331, 577, 931
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	638
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	4 cut(s)	239, 454, 575, 793
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	1039
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	4 cut(s)	77, 207, 414, 596
CviQI	GTAC	1 cut(s)	1039
DdeI	CTNAG	4 cut(s)	65, 272, 294, 450
DpnI	GATC	5 cut(s)	73, 381, 477, 815, 938
DpnII	GATC	5 cut(s)	71, 379, 475, 813, 936
DraI	TTTAAA	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	369, 414, 954
EarI	CTCTTC	3 cut(s)	369, 414, 954
Eco105I	TACGTA	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	413
Eco147I	AGGCCT	4 cut(s)	277, 484, 781, 913
Eco47I	GGWCC	2 cut(s)	239, 793
Eco57I	CTGAAG	1 cut(s)	935
Eco88I	CYCGRG	1 cut(s)	823
EcoO109I	RGGNCCY	2 cut(s)	454, 793
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	80, 210, 417, 599
FaqI	GGGAC	2 cut(s)	631, 849
FatI	CATG	4 cut(s)	76, 206, 413, 595
FauI	CCCGC	1 cut(s)	749
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	8 cut(s)	166, 232, 353, 356, 405, 447, 633, 867
FokI	GGATG	3 cut(s)	338, 584, 938
Fsp4HI	GCNGC	8 cut(s)	166, 232, 353, 356, 405, 447, 633, 867
FspBI	CTAG	6 cut(s)	368, 458, 524, 614, 731, 858
GluI	GCNGC	8 cut(s)	166, 232, 353, 356, 405, 447, 633, 867
HaeIII	GGCC	7 cut(s)	277, 339, 456, 484, 576, 781, 913
HapII	CCGG	3 cut(s)	242, 745, 811
Hin1II	CATG	4 cut(s)	80, 210, 417, 599
HincII	GTYRAC	3 cut(s)	420, 714, 972
HindII	GTYRAC	3 cut(s)	420, 714, 972
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	4 cut(s)	124, 527, 619, 944
HpaI	GTTAAC	1 cut(s)	972
HpaII	CCGG	3 cut(s)	242, 745, 811
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	6 cut(s)	247, 420, 611, 714, 755, 972
Hpy188I	TCNGA	4 cut(s)	178, 384, 532, 553
Hpy188III	TCNNGA	2 cut(s)	142, 1072
Hpy8I	GTNNAC	6 cut(s)	247, 420, 611, 714, 755, 972
Hpy99I	CGWCG	1 cut(s)	1078
HpyAV	CCTTC	5 cut(s)	221, 283, 472, 575, 784
HpyCH4III	ACNGT	1 cut(s)	840
HpyCH4IV	ACGT	2 cut(s)	607, 645
HpyCH4V	TGCA	5 cut(s)	8, 165, 191, 469, 632
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 171, 336, 443, 863, 875
HpyF3I	CTNAG	4 cut(s)	65, 272, 294, 450
HpySE526I	ACGT	2 cut(s)	607, 645
Hsp92II	CATG	4 cut(s)	80, 210, 417, 599
KspAI	GTTAAC	1 cut(s)	972
Kzo9I	GATC	5 cut(s)	71, 379, 475, 813, 936
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	178, 747
Lsp1109I	GCAGC	6 cut(s)	177, 339, 342, 391, 644, 878
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	6 cut(s)	368, 458, 524, 614, 731, 858
MaeII	ACGT	2 cut(s)	607, 645
MaeIII	GTNAC	3 cut(s)	601, 656, 726
MalI	GATC	5 cut(s)	73, 381, 477, 815, 938
MboI	GATC	5 cut(s)	71, 379, 475, 813, 936
MboII	GAAGA	8 cut(s)	81, 356, 401, 485, 599, 941, 1019, 1037
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	4 cut(s)	23, 214, 284, 1079
MlyI	GAGTC	3 cut(s)	521, 613, 953
MnlI	CCTC	6 cut(s)	38, 100, 378, 792, 826, 903
MseI	TTAA	6 cut(s)	183, 374, 504, 662, 807, 971
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	3 cut(s)	242, 745, 811
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	6 cut(s)	10, 171, 336, 443, 863, 875
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	5 cut(s)	71, 379, 475, 813, 936
NlaIII	CATG	4 cut(s)	80, 210, 417, 599
NlaIV	GGNNCC	2 cut(s)	749, 795
NmuCI	GTSAC	2 cut(s)	656, 726
PceI	AGGCCT	4 cut(s)	277, 484, 781, 913
PciSI	GCTCTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	124
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	8 cut(s)	167, 233, 354, 357, 406, 448, 634, 868
PleI	GAGTC	3 cut(s)	521, 613, 952
PpsI	GAGTC	3 cut(s)	521, 613, 952
Ppu21I	YACGTR	2 cut(s)	608, 646
PpuMI	RGGWCCY	1 cut(s)	793
PshBI	ATTAAT	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	749, 795
PspPI	GGNCC	4 cut(s)	239, 454, 575, 793
PspPPI	RGGWCCY	1 cut(s)	793
PstI	CTGCAG	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	1040
RsaNI	GTAC	1 cut(s)	1039
RseI	CAYNNNNRTG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	6 cut(s)	183, 374, 504, 662, 807, 971
SatI	GCNGC	8 cut(s)	166, 232, 353, 356, 405, 447, 633, 867
Sau3AI	GATC	5 cut(s)	71, 379, 475, 813, 936
Sau96I	GGNCC	4 cut(s)	239, 454, 575, 793
SchI	GAGTC	3 cut(s)	521, 613, 953
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	2 cut(s)	163, 300
SinI	GGWCC	2 cut(s)	239, 793
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	3 cut(s)	51, 621, 889
SmoI	CTYRAG	3 cut(s)	51, 621, 889
SnaBI	TACGTA	1 cut(s)	646
Sse9I	AATT	4 cut(s)	23, 214, 284, 1079
SseBI	AGGCCT	4 cut(s)	277, 484, 781, 913
SsiI	CCGC	5 cut(s)	121, 231, 446, 742, 1047
SspMI	CTAG	6 cut(s)	368, 458, 524, 614, 731, 858
StuI	AGGCCT	4 cut(s)	277, 484, 781, 913
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	840
TaiI	ACGT	2 cut(s)	610, 648
TaqI	TCGA	2 cut(s)	378, 908
TasI	AATT	4 cut(s)	23, 214, 284, 1079
TauI	GCSGC	2 cut(s)	234, 449
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	6 cut(s)	183, 374, 504, 662, 807, 971
Tru9I	TTAA	6 cut(s)	183, 374, 504, 662, 807, 971
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	656, 726
TseI	GCWGC	6 cut(s)	165, 352, 355, 404, 632, 866
Tsp45I	GTSAC	2 cut(s)	656, 726
TspDTI	ATGAA	4 cut(s)	195, 443, 1020, 1038
TspGWI	ACGGA	1 cut(s)	938
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	239, 793
VspI	ATTAAT	1 cut(s)	374
XapI	RAATTY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	610
XspI	CTAG	6 cut(s)	368, 458, 524, 614, 731, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.