Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010717

Physical Location & Seq

Genomic Coordinates Forward (+)

66455410 .. 66458701

Gene Structure 3292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG511300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACTGCAGAGAAGATCTCATGGAAATGTATCCTCCCAGTCTGTTGTTCCAAAAGTAGTGATGCGGATTCCACAAGACAAGTTCAAGATAAGCGAACCCCTTTTCTGCAGCAAAGGCTGTCCATGTCGGATGTAATTAGCGATCCCAGCTATGCAGATGATCTCTCCAATTCTTTTTCCGGCCTAAACCTTCACGTGTTTTCACTAGCGGAGCTTAAAGTTGCAACAAACAACTTTTCATGGAGTAATTTGCTTGGTGAAGGCGGCTTTGGACCGGTTTACAAGGGGTTTGTTGATGACAATCTTAGGCCTGGAAAATTGAAGGCTCAGCCTGTAGCCGTCAAACTATTAGACTTGGATGGCTTTCAAGGCCATAGGGAGTGGCTGGCAGAACTTGTTTTTCTTGGACAGCTGAGGCATCCCAATATTGTTAAGCTGATCGGATATTGTTGCGAAGAGGAGCATAGGCTTTTGGTATACGAATACATAGCCAGAGGAAGCTTGGAAGATCAACTCTTCAGAAGTGAGTTTCTTATTTCCATTTTTCTTGACATTTATATTAATCAGCTGCCAACTCTTCTAGTATTAATCGATCAGAGGCTTTTAGGATATTCTGCTGCTCTTCCATGGTCAACGAGAATGAAAATCGCAGTTGGGGCGGCTAAGGGCCTAGCCTTCCTGCATGAAGATCATAGGCCTGTCATATTCAGGGATTTTAAAACTTCAAATGTTCTGCTAGACTCTGTAAGTTTTGTTCTGAGCTCTCCTTCTCTGACTCTATACATGGCATGTAACACAAGGAAACCAAATAACATTTACACTTCATATTTTAGGATTATACAGCAAAACTTTCGGATTTTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

288

Amino Acids

32.61

Weight (kDa)

7.62

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	82 - 252	2e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	83 - 248	7.1e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26290
fragaria_vesca	FvH4_2g30840 FvH4_2g30840
malus_domestica	MD08G1073100.v1.1 MD15G1048500.v1.1
prunus_persica	Prupe.1G402700_v2.0.a1
pyrus_communis	pycom15g04730
rosa_chinensis	RchiOBHm_Chr6g0312011
rosa_laevigata	RLG00000010361
rosa_roxburghii	Rroxscaffold_7G00157140
rosa_rugosa	Rorug06G0392000 Rorug06G0392000 Rorug06G0392100 Rorug06G0392100 Rorug06G0392200
rosa_samantha	Rh6AG508600 Rh6BG519900 Rh6CG525800 Rh6DG511300
rosa_wichuraiana	Rw6G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	4 cut(s)	65, 209, 264, 659
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	502
AcvI	CACGTG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	195
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	86, 322, 368, 726
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	7 cut(s)	150, 214, 412, 436, 501, 568, 762
AluI	AGCT	7 cut(s)	150, 214, 412, 436, 501, 568, 762
Alw21I	GWGCWC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	5 cut(s)	181, 308, 370, 667, 695
ApeKI	GCWGC	3 cut(s)	109, 568, 617
AseI	ATTAAT	2 cut(s)	561, 587
AsiGI	ACCGGT	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	272, 667
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	764
BbrPI	CACGTG	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	764
BbvCI	CCTCAGC	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	121, 555, 604
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	41
BfaI	CTAG	4 cut(s)	206, 581, 671, 737
BfmI	CTRYAG	3 cut(s)	6, 107, 333
BfuI	GTATCC	1 cut(s)	41
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	5 cut(s)	110, 265, 569, 618, 660
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	5 cut(s)	111, 266, 570, 619, 661
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 667
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	52, 427
BmuI	ACTGGG	1 cut(s)	32
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu10I	CCTNAGC	2 cut(s)	413, 663
Bpu1102I	GCTNAGC	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	626
BsaWI	WCCGGW	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	3 cut(s)	136, 364, 418
BseJI	GATNNNNATC	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	341, 404, 749
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	121, 555, 604
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	5 cut(s)	183, 310, 372, 669, 697
BshTI	ACCGGT	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	180, 275
BsnI	GGCC	5 cut(s)	183, 310, 372, 669, 697
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	4 cut(s)	65, 209, 264, 659
BspANI	GGCC	5 cut(s)	183, 310, 372, 669, 697
BspCNI	CTCAG	3 cut(s)	340, 405, 750
BspDI	ATCGAT	1 cut(s)	591
BspMAI	CTGCAG	2 cut(s)	10, 111
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
BssNAI	GTATAC	1 cut(s)	478
BssT1I	CCWWGG	1 cut(s)	626
Bst1107I	GTATAC	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	4 cut(s)	450, 521, 582, 627
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	5 cut(s)	305, 327, 413, 663, 758
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	136, 364, 418
BstKTI	GATC	7 cut(s)	18, 145, 163, 441, 511, 595, 691
BstMBI	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 147, 369, 656
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	3 cut(s)	6, 107, 333
BstV1I	GCAGC	3 cut(s)	121, 555, 604
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BstZ17I	GTATAC	1 cut(s)	478
Bsu15I	ATCGAT	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	5 cut(s)	183, 310, 372, 669, 697
BsuTUI	ATCGAT	1 cut(s)	591
BtgI	CCRYGG	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	136, 364, 418
Cac8I	GCNNGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	272, 667
ClaI	ATCGAT	1 cut(s)	591
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	7 cut(s)	21, 124, 240, 627, 683, 784, 789
DdeI	CTNAG	5 cut(s)	305, 327, 413, 663, 758
DpnI	GATC	7 cut(s)	17, 144, 162, 440, 510, 594, 690
DpnII	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
DraI	TTTAAA	1 cut(s)	718
Eam1104I	CTCTTC	4 cut(s)	450, 521, 582, 627
EarI	CTCTTC	4 cut(s)	450, 521, 582, 627
Ecl136II	GAGCTC	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	626
Eco147I	AGGCCT	2 cut(s)	310, 697
Eco24I	GRGCYC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	502
Eco72I	CACGTG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	762
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	7 cut(s)	24, 127, 243, 630, 686, 787, 792
FatI	CATG	7 cut(s)	20, 123, 239, 626, 682, 783, 788
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	5 cut(s)	110, 265, 569, 618, 660
FokI	GGATG	3 cut(s)	143, 371, 405
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	5 cut(s)	110, 265, 569, 618, 660
FspBI	CTAG	4 cut(s)	206, 581, 671, 737
GluI	GCNGC	5 cut(s)	110, 265, 569, 618, 660
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	183, 310, 372, 669, 697
HapII	CCGG	2 cut(s)	180, 275
Hin1II	CATG	7 cut(s)	24, 127, 243, 630, 686, 787, 792
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	3 cut(s)	68, 740, 775
HpaII	CCGG	2 cut(s)	180, 275
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	280, 478, 633
Hpy188I	TCNGA	7 cut(s)	130, 443, 521, 597, 759, 774, 855
Hpy188III	TCNNGA	2 cut(s)	86, 548
Hpy8I	GTNNAC	3 cut(s)	280, 478, 633
HpyAV	CCTTC	5 cut(s)	200, 254, 316, 685, 777
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	8, 109, 155, 224, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 147, 369, 656
HpyF3I	CTNAG	5 cut(s)	305, 327, 413, 663, 758
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	7 cut(s)	24, 127, 243, 630, 686, 787, 792
Kzo9I	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	211, 460
Lsp1109I	GCAGC	3 cut(s)	121, 555, 604
LweI	GCATC	2 cut(s)	52, 427
MaeI	CTAG	4 cut(s)	206, 581, 671, 737
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	791
MalI	GATC	7 cut(s)	17, 144, 162, 440, 510, 594, 690
MboI	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
MboII	GAAGA	7 cut(s)	25, 467, 508, 518, 569, 614, 698
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	4 cut(s)	135, 169, 247, 317
MlyI	GAGTC	2 cut(s)	734, 769
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	44, 408, 451, 488, 591
MseI	TTAA	5 cut(s)	216, 432, 561, 587, 717
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	2 cut(s)	412, 568
MspI	CCGG	2 cut(s)	180, 275
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	115, 147, 369, 656
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
NlaIII	CATG	7 cut(s)	24, 127, 243, 630, 686, 787, 792
NspI	RCATGY	1 cut(s)	792
PceI	AGGCCT	2 cut(s)	310, 697
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	111, 266, 570, 619, 661
PleI	GAGTC	2 cut(s)	734, 769
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	2 cut(s)	734, 769
Ppu21I	YACGTR	1 cut(s)	196
PshBI	ATTAAT	2 cut(s)	561, 587
Psp124BI	GAGCTC	1 cut(s)	764
Psp6I	CCWGG	1 cut(s)	310
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	272, 667
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PstI	CTGCAG	2 cut(s)	10, 111
PsuI	RGATCY	1 cut(s)	15
PvuII	CAGCTG	2 cut(s)	412, 568
RseI	CAYNNNNRTG	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	764
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	5 cut(s)	216, 432, 561, 587, 717
SatI	GCNGC	5 cut(s)	110, 265, 569, 618, 660
Sau3AI	GATC	7 cut(s)	15, 142, 160, 438, 508, 592, 688
Sau96I	GGNCC	2 cut(s)	272, 667
SchI	GAGTC	2 cut(s)	734, 769
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	764
SetI	ASST	9 cut(s)	152, 192, 198, 216, 414, 438, 503, 570, 764
SfaNI	GCATC	2 cut(s)	52, 427
SfcI	CTRYAG	3 cut(s)	6, 107, 333
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	4 cut(s)	135, 169, 247, 317
SseBI	AGGCCT	2 cut(s)	310, 697
SsiI	CCGC	4 cut(s)	65, 209, 264, 659
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	4 cut(s)	206, 581, 671, 737
SstI	GAGCTC	1 cut(s)	764
StuI	AGGCCT	2 cut(s)	310, 697
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	626
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	591
TasI	AATT	4 cut(s)	135, 169, 247, 317
TauI	GCSGC	2 cut(s)	267, 662
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	5 cut(s)	216, 432, 561, 587, 717
Tru9I	TTAA	5 cut(s)	216, 432, 561, 587, 717
TseI	GCWGC	3 cut(s)	109, 568, 617
TspDTI	ATGAA	4 cut(s)	228, 656, 699, 813
VpaK11BI	GGWCC	1 cut(s)	272
VspI	ATTAAT	2 cut(s)	561, 587
XceI	RCATGY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	4 cut(s)	206, 581, 671, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.