Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010717

Physical Location & Seq

Genomic Coordinates Forward (+)

68776854 .. 68778885

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGACTGCAGAGAAGATGTCATGGAAATGTATCCTCCCAGTCTGTTGTTCCAAAAGTAGTGATGCGGATTCCACAAGACAAGTTCAAGATAAGCGAACCCCTTTTCTGCAGCAAAGGCTGTCCATGTCGGATGTAATTAGCGATCCCAGCTATGCAGATGATCTCTCCAATTCTTTTTCCGGCCTAAACCTCCACGTGTTTTCACTAGCGGAGCTTAAAGTTGCAACAAACAACTTTTCATGGAGTAATTTGCTTGGTGAAGGCGGCTTTGGACCGGTTTACAAGGGGTTTGTTGATGACAATCTTAGGCCTGGAAAATTGAAGGCTCAGCCTGTAGCCGTCAAACTATTAGACTTGGATGGCTTTCAAGGCCATAGGGAGTGGCTGGCAGAACTTGTTTTTCTTGGACAGCTGAGGCATCCCAATATTGTTAAGCTGATCGGATATTGTTGCGAAGAGGAGCATAGGCTTTTGGTATACGAATACATAGCCAGAGGAAGCTTGGAAGATCAACTCTTCAGAAGATATTCTGCTGCTCTTCCATGGTCAACCAGAATGAAAATCGCAGTTGGGGCGGCTAAGGGCCTAGCATTCCTGCATGAAGATCATAGGCCTGTCATATTCAGGGATTTTAAAACTTCAAATGTTCTGCTAGACTCTGATTATACAGCAAAACTTTCGGATTTTGGGTTAGCAAAGGATGGCCCAGAAGGAGAAGAAACTCATGTGGTAACACGTATACTAGGGACTCAAGGGTATGCAGCCCCTGAATACGTAAGGACAGGTCACTTAACAACCAAGAGCGATGTGTATAGCTTTGGAGTAGTTCTATTAGAGCTGTTGACAGGTAAAAGGTCACTAGACAGAACCCGCCGGAGCCGTGAACAATGCCTTGTAGAATGGGCGAGGCCTCTGTTGAAGGACCCAAGAAAGCTTAACCGGATCATAGACCCGAGATTGGAGGGACAGTATTCCAGCAAAGGGGCTAGAAAGGCAGCTACATTGGCTTATACTTGCTTGAGCAACAACCCGAAGTCGAGGCCTATGATGACGGATGTGGTTATGATCTTGGAGTCTCTTCAGGGCTTCAACGAAGCGTTAACCTATCAACCATTTGTTTATGTCGCACCAAATGAAGAAAAGGACTGCAATGAAGATAAGGGAAAGTACCATTGCGGATACACCCTAAAAGAAGCTCTCAAGACGGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

405

Amino Acids

45.66

Weight (kDa)

7.98

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	82 - 355	4.7e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	83 - 354	6.1e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26290
fragaria_vesca	FvH4_2g30840 FvH4_2g30840
malus_domestica	MD08G1073100.v1.1 MD15G1048500.v1.1
prunus_persica	Prupe.1G402700_v2.0.a1
pyrus_communis	pycom15g04730
rosa_chinensis	RchiOBHm_Chr6g0312011
rosa_laevigata	RLG00000010361
rosa_roxburghii	Rroxscaffold_7G00157140
rosa_rugosa	Rorug06G0392000 Rorug06G0392000 Rorug06G0392100 Rorug06G0392100 Rorug06G0392200
rosa_samantha	Rh6AG508600 Rh6BG519900 Rh6CG525800 Rh6DG511300
rosa_wichuraiana	Rw6G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	477, 739
AciI	CCGC	6 cut(s)	65, 209, 264, 575, 871, 1176
AclWI	GGATC	2 cut(s)	137, 950
AcuI	CTGAAG	2 cut(s)	502, 1064
AcvI	CACGTG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	1169
AfiI	CCNNNNNNNGG	2 cut(s)	958, 981
AflIII	ACRYGT	2 cut(s)	195, 734
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	6 cut(s)	86, 322, 368, 642, 919, 1090
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
Alw26I	GTCTC	1 cut(s)	1080
AlwI	GGATC	2 cut(s)	137, 950
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	8 cut(s)	181, 308, 370, 583, 611, 703, 908, 1040
ApeKI	GCWGC	4 cut(s)	109, 533, 761, 995
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	526
AspS9I	GGNCC	4 cut(s)	272, 583, 704, 922
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	952
AvaII	GGWCC	2 cut(s)	272, 922
BbrPI	CACGTG	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	121, 520, 773, 1007
BccI	CCATC	2 cut(s)	353, 695
BceAI	ACGGC	2 cut(s)	323, 864
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	2 cut(s)	41, 1172
BcoDI	GTCTC	1 cut(s)	1080
BfaI	CTAG	6 cut(s)	206, 587, 653, 743, 860, 987
BfmI	CTRYAG	3 cut(s)	6, 107, 333
BfuI	GTATCC	2 cut(s)	41, 1172
BisI	GCNGC	6 cut(s)	110, 265, 534, 576, 762, 996
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	6 cut(s)	111, 266, 535, 577, 763, 997
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	2 cut(s)	272, 922
BmeT110I	CYCGRG	1 cut(s)	952
BmgT120I	GGNCC	4 cut(s)	272, 583, 704, 922
BmiI	GGNNCC	2 cut(s)	878, 924
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	52, 427
BmuI	ACTGGG	1 cut(s)	32
Bpu10I	CCTNAGC	2 cut(s)	413, 579
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	3 cut(s)	735, 1039, 1184
BsaAI	YACGTR	3 cut(s)	196, 737, 775
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	542
BsaWI	WCCGGW	2 cut(s)	274, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	2 cut(s)	958, 981
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	1156, 1171
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	5 cut(s)	136, 364, 418, 706, 1060
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	958, 981
BseMI	GCAATG	2 cut(s)	1156, 1171
BseMII	CTCAG	2 cut(s)	341, 404
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	121, 520, 773, 1007
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	8 cut(s)	183, 310, 372, 585, 613, 705, 910, 1042
BshTI	ACCGGT	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	4 cut(s)	180, 275, 874, 940
BslFI	GGGAC	2 cut(s)	760, 978
BslI	CCNNNNNNNGG	2 cut(s)	958, 981
BsmAI	GTCTC	1 cut(s)	1080
BsmFI	GGGAC	2 cut(s)	760, 978
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	8 cut(s)	183, 310, 372, 585, 613, 705, 910, 1042
BsoBI	CYCGRG	1 cut(s)	952
Bsp143I	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	6 cut(s)	65, 209, 264, 575, 871, 1176
BspANI	GGCC	8 cut(s)	183, 310, 372, 585, 613, 705, 910, 1042
BspCNI	CTCAG	2 cut(s)	340, 405
BspLI	GGNNCC	2 cut(s)	878, 924
BspMAI	CTGCAG	2 cut(s)	10, 111
BspPI	GGATC	2 cut(s)	137, 950
BspQI	GCTCTTC	1 cut(s)	543
BsrDI	GCAATG	2 cut(s)	1156, 1171
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
BssNAI	GTATAC	2 cut(s)	478, 740
BssT1I	CCWWGG	1 cut(s)	542
Bst1107I	GTATAC	2 cut(s)	478, 740
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	969
Bst6I	CTCTTC	4 cut(s)	450, 521, 543, 1083
BstBAI	YACGTR	3 cut(s)	196, 737, 775
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	4 cut(s)	305, 327, 413, 579
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	5 cut(s)	136, 364, 418, 706, 1060
BstKTI	GATC	7 cut(s)	145, 163, 441, 511, 607, 945, 1068
BstMAI	GTCTC	1 cut(s)	1080
BstMBI	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 147, 369, 572, 992, 1004
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	3 cut(s)	6, 107, 333
BstSNI	TACGTA	1 cut(s)	775
BstV1I	GCAGC	4 cut(s)	121, 520, 773, 1007
BstZ17I	GTATAC	2 cut(s)	478, 740
BsuI	GTATCC	2 cut(s)	41, 1172
BsuRI	GGCC	8 cut(s)	183, 310, 372, 585, 613, 705, 910, 1042
BtgI	CCRYGG	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	819
BtsCI	GGATG	5 cut(s)	136, 364, 418, 706, 1060
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	767
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	272, 583, 704, 922
Csp6I	GTAC	1 cut(s)	1168
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	6 cut(s)	21, 124, 240, 543, 599, 725
CviQI	GTAC	1 cut(s)	1168
DdeI	CTNAG	4 cut(s)	305, 327, 413, 579
DpnI	GATC	7 cut(s)	144, 162, 440, 510, 606, 944, 1067
DpnII	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
DraI	TTTAAA	1 cut(s)	634
Eam1104I	CTCTTC	4 cut(s)	450, 521, 543, 1083
EarI	CTCTTC	4 cut(s)	450, 521, 543, 1083
Eco105I	TACGTA	1 cut(s)	775
Eco130I	CCWWGG	1 cut(s)	542
Eco147I	AGGCCT	4 cut(s)	310, 613, 910, 1042
Eco47I	GGWCC	2 cut(s)	272, 922
Eco57I	CTGAAG	2 cut(s)	502, 1064
Eco72I	CACGTG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	952
EcoO109I	RGGNCCY	2 cut(s)	583, 922
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	6 cut(s)	24, 127, 243, 546, 602, 728
FaqI	GGGAC	2 cut(s)	760, 978
FatI	CATG	6 cut(s)	20, 123, 239, 542, 598, 724
FauI	CCCGC	1 cut(s)	878
FblI	GTMKAC	2 cut(s)	477, 739
Fnu4HI	GCNGC	6 cut(s)	110, 265, 534, 576, 762, 996
FokI	GGATG	5 cut(s)	143, 371, 405, 713, 1067
Fsp4HI	GCNGC	6 cut(s)	110, 265, 534, 576, 762, 996
FspBI	CTAG	6 cut(s)	206, 587, 653, 743, 860, 987
GluI	GCNGC	6 cut(s)	110, 265, 534, 576, 762, 996
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	8 cut(s)	183, 310, 372, 585, 613, 705, 910, 1042
HapII	CCGG	4 cut(s)	180, 275, 874, 940
Hin1II	CATG	6 cut(s)	24, 127, 243, 546, 602, 728
HincII	GTYRAC	3 cut(s)	549, 843, 1101
HindII	GTYRAC	3 cut(s)	549, 843, 1101
HindIII	AAGCTT	2 cut(s)	499, 932
HinfI	GANTC	4 cut(s)	68, 656, 748, 1073
HpaI	GTTAAC	1 cut(s)	1101
HpaII	CCGG	4 cut(s)	180, 275, 874, 940
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	7 cut(s)	280, 478, 549, 740, 843, 884, 1101
Hpy188I	TCNGA	5 cut(s)	130, 443, 521, 661, 682
Hpy188III	TCNNGA	2 cut(s)	86, 1201
Hpy8I	GTNNAC	7 cut(s)	280, 478, 549, 740, 843, 884, 1101
HpyAV	CCTTC	4 cut(s)	254, 316, 704, 913
HpyCH4III	ACNGT	1 cut(s)	969
HpyCH4IV	ACGT	3 cut(s)	195, 736, 774
HpyCH4V	TGCA	7 cut(s)	8, 109, 155, 224, 598, 761, 1149
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 147, 369, 572, 992, 1004
HpyF3I	CTNAG	4 cut(s)	305, 327, 413, 579
HpySE526I	ACGT	3 cut(s)	195, 736, 774
Hsp92II	CATG	6 cut(s)	24, 127, 243, 546, 602, 728
KspAI	GTTAAC	1 cut(s)	1101
Kzo9I	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	3 cut(s)	211, 460, 876
Lsp1109I	GCAGC	4 cut(s)	121, 520, 773, 1007
LweI	GCATC	2 cut(s)	52, 427
MaeI	CTAG	6 cut(s)	206, 587, 653, 743, 860, 987
MaeII	ACGT	3 cut(s)	195, 736, 774
MaeIII	GTNAC	3 cut(s)	730, 785, 855
MalI	GATC	7 cut(s)	144, 162, 440, 510, 606, 944, 1067
MboI	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
MluCI	AATT	5 cut(s)	135, 169, 247, 317, 1208
MlyI	GAGTC	3 cut(s)	650, 742, 1082
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	44, 200, 408, 451, 488, 900, 921, 955, 1032
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	6 cut(s)	216, 432, 633, 791, 936, 1100
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	4 cut(s)	180, 275, 874, 940
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	6 cut(s)	115, 147, 369, 572, 992, 1004
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
NlaIII	CATG	6 cut(s)	24, 127, 243, 546, 602, 728
NlaIV	GGNNCC	2 cut(s)	878, 924
NmuCI	GTSAC	2 cut(s)	785, 855
PceI	AGGCCT	4 cut(s)	310, 613, 910, 1042
PciSI	GCTCTTC	1 cut(s)	543
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	111, 266, 535, 577, 763, 997
PleI	GAGTC	3 cut(s)	650, 742, 1081
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	3 cut(s)	650, 742, 1081
Ppu21I	YACGTR	3 cut(s)	196, 737, 775
PpuMI	RGGWCCY	1 cut(s)	922
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	1 cut(s)	310
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	878, 924
PspPI	GGNCC	4 cut(s)	272, 583, 704, 922
PspPPI	RGGWCCY	1 cut(s)	922
PstI	CTGCAG	2 cut(s)	10, 111
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	1169
RsaNI	GTAC	1 cut(s)	1168
RseI	CAYNNNNRTG	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	6 cut(s)	216, 432, 633, 791, 936, 1100
SatI	GCNGC	6 cut(s)	110, 265, 534, 576, 762, 996
Sau3AI	GATC	7 cut(s)	142, 160, 438, 508, 604, 942, 1065
Sau96I	GGNCC	4 cut(s)	272, 583, 704, 922
SchI	GAGTC	3 cut(s)	650, 742, 1082
ScrFI	CCNGG	1 cut(s)	312
SfaNI	GCATC	2 cut(s)	52, 427
SfcI	CTRYAG	3 cut(s)	6, 107, 333
SinI	GGWCC	2 cut(s)	272, 922
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	3 cut(s)	750, 1018, 1199
SmoI	CTYRAG	3 cut(s)	750, 1018, 1199
SnaBI	TACGTA	1 cut(s)	775
Sse9I	AATT	5 cut(s)	135, 169, 247, 317, 1208
SseBI	AGGCCT	4 cut(s)	310, 613, 910, 1042
SsiI	CCGC	6 cut(s)	65, 209, 264, 575, 871, 1176
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	6 cut(s)	206, 587, 653, 743, 860, 987
StuI	AGGCCT	4 cut(s)	310, 613, 910, 1042
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	969
TaiI	ACGT	3 cut(s)	198, 739, 777
TaqI	TCGA	1 cut(s)	1037
TasI	AATT	5 cut(s)	135, 169, 247, 317, 1208
TauI	GCSGC	2 cut(s)	267, 578
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	6 cut(s)	216, 432, 633, 791, 936, 1100
Tru9I	TTAA	6 cut(s)	216, 432, 633, 791, 936, 1100
TseFI	GTSAC	2 cut(s)	785, 855
TseI	GCWGC	4 cut(s)	109, 533, 761, 995
Tsp45I	GTSAC	2 cut(s)	785, 855
TspDTI	ATGAA	5 cut(s)	228, 572, 615, 1149, 1167
TspGWI	ACGGA	1 cut(s)	1067
VpaK11BI	GGWCC	2 cut(s)	272, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	2 cut(s)	477, 739
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	6 cut(s)	206, 587, 653, 743, 860, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.