FvH4_2g31930

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013620
Physical Location & Seq
Forward (+)
24330799 .. 24332740
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31930.t1

Sequence Viewer

Length: 1083 bp
ATGAGGAGTACTCCAGCATATCCGAACCCACCATCCTTTCCCTTCTCCCTTGAAAATTTTATAGCAGATCAAGAAGCAGCACATGATCAACCCCTAAAACTCTTCTTCTCATCATCAGTACCAAATGGCCGTGCTTCTTGTTCTCTCGCATTTCCAGCTTTCTTTGACTCCCTCAGTGATCAGTCGGGGATCTCTAGTACGAGTATTACTGGTGGAGATCAAGCCCTAGTATATGATCAAAGGGCAAATAAGAGCATATGGCAAGGTGAAACTAGTTATGATCCATTAGTATGCTCATCATCTTCTTTAGTTCAACCCGTGTCCGATGATAGCAACGAGGAGTACCAGAAGTTGTCTGTGTGCACTGATCAAATAACTGAAACTAATGAAGACCCTGAGAGTAACAATAATAGGCCAGTAAAGTGGACACCCTCGACGATGAAGTTGATGCAAAAGATGACCAATCAACCGGATCAAGTACCTGAAAACATTCCCCTTACATTTAAGTTCCAAACTGCTGGTCGTGATGATCAGCATCGTGAAACTAATACTGGCCAAACCAGCAGCAGCAGCAGCTTAACTATTACCAATAAGAGGAGTAGTAGTAACAGTGGTGTGTCGGCTGCTAGGGTTTGTTCGGATTGCAGCACCAACACAACCCCGCTTTGGCGGAGTGGTCCTCGAGGTCCCAAGTCACTATGCAATGCGTGTGGAATTCGACAAAGAAAAGCGAGAAGATCCATGGCTGAAGCTGGATTGGGATGTGGCACCACCAGCACGGCTACTACTATTACAGCTGCTATCACGGCCAAACCATCATCAATTAGTAAGGGTAAGGAGAAAATATCACCACAAAACCACAATGTCAGAGTGAGTTGCAAGAACAAAAGAAAACTCATCATGACCAACGAAGGTACTAGTACTGCAGCACCTAGCAAATATTACAAGAGAAAAGATAAACAGCTCTGTAACTTCAAGCAGGTAGCTGCTTTTCCACCATCGGCACTATTTCCTCTAGATGTTGAAGAAGCTGCAATCCTGCTAATGGACCTATCTTCTGGCCTATGTATGAACCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

361

Amino Acids

39.08

Weight (kDa)

8.7

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 212 - 246 2.6e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 970
AccB1I GGYRCC 1 cut(s) 767
AciI CCGC 2 cut(s) 662, 670
AclWI GGATC 4 cut(s) 197, 275, 480, 732
AcoI YGGCCR 3 cut(s) 127, 553, 807
AcsI RAATTY 2 cut(s) 55, 714
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 7 cut(s) 10, 120, 199, 344, 480, 916, 922
AfiI CCNNNNNNNGG 3 cut(s) 594, 666, 1045
AgsI TTSAA 4 cut(s) 53, 314, 976, 1025
AhlI ACTAGT 2 cut(s) 272, 917
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 7 cut(s) 158, 576, 752, 797, 964, 986, 1031
AluI AGCT 7 cut(s) 158, 576, 752, 797, 964, 986, 1031
Alw21I GWGCWC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 4 cut(s) 197, 275, 480, 732
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 5 cut(s) 127, 413, 553, 807, 1060
ApaLI GTGCAC 1 cut(s) 361
ApoI RAATTY 2 cut(s) 55, 714
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 3 cut(s) 677, 686, 1048
AsuHPI GGTGA 2 cut(s) 278, 840
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 3 cut(s) 677, 686, 1048
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 365
BccI CCATC 3 cut(s) 40, 823, 1006
BceAI ACGGC 3 cut(s) 114, 795, 822
BclI TGATCA 5 cut(s) 85, 178, 235, 367, 529
BcuI ACTAGT 2 cut(s) 272, 917
BfaI CTAG 7 cut(s) 195, 227, 273, 627, 918, 933, 1016
BfmI CTRYAG 1 cut(s) 924
BfuAI ACCTGC 1 cut(s) 970
BmcAI AGTACT 2 cut(s) 10, 922
Bme18I GGWCC 3 cut(s) 677, 686, 1048
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 677, 686, 1048
BmiI GGNNCC 2 cut(s) 688, 769
BmsI GCATC 2 cut(s) 438, 544
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 3 cut(s) 27, 664, 696
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 3 cut(s) 594, 666, 1045
Bse1I ACTGG 3 cut(s) 214, 416, 556
Bse3DI GCAATG 1 cut(s) 709
Bse8I GATNNNNATC 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 741
BseGI GGATG 2 cut(s) 32, 767
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 3 cut(s) 594, 666, 1045
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 2 cut(s) 187, 387
BseNI ACTGG 3 cut(s) 214, 416, 556
BseRI GAGGAG 3 cut(s) 19, 353, 610
BseSI GKGCMC 1 cut(s) 365
BshFI GGCC 5 cut(s) 129, 415, 555, 809, 1062
BshNI GGYRCC 1 cut(s) 767
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 3 cut(s) 594, 666, 1045
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 5 cut(s) 129, 415, 555, 809, 1062
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 1 cut(s) 365
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 2 cut(s) 662, 670
BspANI GGCC 5 cut(s) 129, 415, 555, 809, 1062
BspCNI CTCAG 2 cut(s) 186, 388
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 2 cut(s) 688, 769
BspMAI CTGCAG 1 cut(s) 928
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 4 cut(s) 197, 275, 480, 732
BspT107I GGYRCC 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 709
BsrI ACTGG 3 cut(s) 214, 416, 556
BssECI CCNNGG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 741
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 173, 396
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 32, 767
BstMWI GCNNNNNNNGC 6 cut(s) 155, 561, 570, 573, 774, 806
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 189, 737
BstXI CCANNNNNNTGG 2 cut(s) 423, 518
BstYI RGATCY 2 cut(s) 189, 737
BsuRI GGCC 5 cut(s) 129, 415, 555, 809, 1062
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 2 cut(s) 32, 767
BtsIMutI CAGTG 3 cut(s) 181, 363, 616
BveI ACCTGC 1 cut(s) 970
CciI TCATGA 1 cut(s) 900
Cfr13I GGNCC 3 cut(s) 677, 686, 1048
Csp6I GTAC 7 cut(s) 9, 119, 198, 343, 479, 915, 921
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 3 cut(s) 83, 742, 901
CviQI GTAC 7 cut(s) 9, 119, 198, 343, 479, 915, 921
DdeI CTNAG 2 cut(s) 173, 396
EaeI YGGCCR 3 cut(s) 127, 553, 807
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EciI GGCGGA 1 cut(s) 685
Eco130I CCWWGG 1 cut(s) 741
Eco47I GGWCC 3 cut(s) 677, 686, 1048
Eco57I CTGAAG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 714
EcoT14I CCWWGG 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 3 cut(s) 86, 745, 904
FaqI GGGAC 1 cut(s) 672
FatI CATG 3 cut(s) 82, 741, 900
FauI CCCGC 1 cut(s) 669
FauNDI CATATG 1 cut(s) 257
FbaI TGATCA 5 cut(s) 85, 178, 235, 367, 529
FokI GGATG 2 cut(s) 19, 774
FspBI CTAG 7 cut(s) 195, 227, 273, 627, 918, 933, 1016
HaeIII GGCC 5 cut(s) 129, 415, 555, 809, 1062
HapII CCGG 1 cut(s) 470
Hin1II CATG 3 cut(s) 86, 745, 904
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 278, 840
Hpy166II GTNNAC 2 cut(s) 363, 426
Hpy188I TCNGA 4 cut(s) 24, 325, 640, 869
Hpy188III TCNNGA 6 cut(s) 71, 524, 539, 901, 1016, 1080
Hpy8I GTNNAC 2 cut(s) 363, 426
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 52, 905
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 7 cut(s) 363, 451, 645, 702, 879, 926, 1034
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 561, 570, 573, 774, 806
HpyF3I CTNAG 2 cut(s) 173, 396
Hsp92II CATG 3 cut(s) 86, 745, 904
Ksp22I TGATCA 5 cut(s) 85, 178, 235, 367, 529
LweI GCATC 2 cut(s) 438, 544
MaeI CTAG 7 cut(s) 195, 227, 273, 627, 918, 933, 1016
MaeIII GTNAC 4 cut(s) 401, 605, 693, 968
MboII GAAGA 7 cut(s) 94, 97, 294, 401, 747, 1037, 1047
MflI RGATCY 2 cut(s) 189, 737
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 3 cut(s) 55, 714, 822
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 7 cut(s) 182, 331, 442, 588, 677, 690, 1023
Mox20I TGGCCA 1 cut(s) 555
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 555
MseI TTAA 2 cut(s) 504, 578
MslI CAYNNNNRTG 1 cut(s) 289
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 1 cut(s) 470
MwoI GCNNNNNNNGC 6 cut(s) 155, 561, 570, 573, 774, 806
NcoI CCATGG 1 cut(s) 741
NdeI CATATG 1 cut(s) 257
NlaIII CATG 3 cut(s) 86, 745, 904
NlaIV GGNNCC 2 cut(s) 688, 769
NmuCI GTSAC 1 cut(s) 693
PaeR7I CTCGAG 1 cut(s) 681
PagI TCATGA 1 cut(s) 900
PdmI GAANNNNTTC 1 cut(s) 489
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 688, 769
PspPI GGNCC 3 cut(s) 677, 686, 1048
PspPPI RGGWCCY 1 cut(s) 686
PspXI VCTCGAGB 1 cut(s) 681
PstI CTGCAG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 189, 737
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 7 cut(s) 10, 120, 199, 344, 480, 916, 922
RsaNI GTAC 7 cut(s) 9, 119, 198, 343, 479, 915, 921
RseI CAYNNNNRTG 1 cut(s) 289
SaqAI TTAA 2 cut(s) 504, 578
Sau96I GGNCC 3 cut(s) 677, 686, 1048
ScaI AGTACT 2 cut(s) 10, 922
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 365
SfaNI GCATC 2 cut(s) 438, 544
SfcI CTRYAG 1 cut(s) 924
Sfr274I CTCGAG 1 cut(s) 681
SinI GGWCC 3 cut(s) 677, 686, 1048
SlaI CTCGAG 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
SpeI ACTAGT 2 cut(s) 272, 917
Sse9I AATT 3 cut(s) 55, 714, 822
SsiI CCGC 2 cut(s) 662, 670
SspI AATATT 1 cut(s) 941
SspMI CTAG 7 cut(s) 195, 227, 273, 627, 918, 933, 1016
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 1 cut(s) 611
TaqI TCGA 3 cut(s) 434, 682, 718
TasI AATT 3 cut(s) 55, 714, 822
TatI WGTACW 2 cut(s) 8, 920
Tru1I TTAA 2 cut(s) 504, 578
Tru9I TTAA 2 cut(s) 504, 578
TscAI CASTG 3 cut(s) 181, 370, 616
TseFI GTSAC 1 cut(s) 693
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 2 cut(s) 402, 455
TspRI CASTG 3 cut(s) 181, 370, 616
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 677, 686, 1048
XapI RAATTY 2 cut(s) 55, 714
XbaI TCTAGA 1 cut(s) 1015
XhoI CTCGAG 1 cut(s) 681
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 7 cut(s) 195, 227, 273, 627, 918, 933, 1016
ZrmI AGTACT 2 cut(s) 10, 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.