Rroxscaffold_7G00158190

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013620
Physical Location & Seq
Forward (+)
1713501 .. 1715517
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158190.1

Sequence Viewer

Length: 1086 bp
ATGAGGAGTACTCGAGCATATCTGAACCCACCATCATTTCCTTTCTCCCTTGAAAATTTTGTAGCAGATCAAGCAGCACAGGATCAACGCCTAAAACTCTTCATCTCATCATCACTACCATATGGCGGTGCTTCTTGTTCTCTCTCATTTCCTGCTTTCTTTGACTCCCTTACTGATCAGTCGGGGATCTCTAGTACGAGTATTACTGTTGGAGATCAAGCCCTAGTATATAAGGGGCAAAGGGCGAATAAAAGCATATGGCAAGGTGAAACAAATTATGATCAAGTATGCTCATCATCTTCTTTAGTTCATCCTGTGTCCGATGTTAGCAACGAGGACCGTAAGTTATCTGTATGCACTGATCAAATAATTGAGAATAATGAAGACCATGAGAGTAACACTAATAGGCCAGTAAAGTGGACACGCTCGACGATGAAGTTGATGCAAAAGATGACCCATGAACCGGATCAAGTCCCTGAAAAAAATCCCCTTACTTATAAGTTCCAAAGTGCTCGTCGTGATGATCAGCATCGAGAAACTAATACTGGCGAAACCAGCAGCAGCAGCAGCTTAACAATTTCCATTAACAAGAGTAGTAGCAGTATAGTGTCTGCCGTTAGGGTTTGTTCGGATTGCAGCACCAACACAACCCCACTTTGGAGGAGTGGTCCTCGAGGTCCCAAGTCACTATGCAATGCGTGTGGAATTCGGCAGAGGAAAGCGAGAAGATCCATGGCTGAAGCTGCTGCTGCTGCAACTGGATTGGCAGGTGGCACCACCGGCCCGGCCACTACTTCAGCTGCTACTACCGCCAAATCATCATCTATGAGTAAGGGTAAGGGGAAAAAATCACGACAAAACCACTATGTCACAGTGAGTTGCAAGAAGAAAAGAAAACTCATCATGACCGACGACAGTTCTAGTGCTGCAGCACCTAGCATATATTACAAGAGAAATGATAAACAGCTGTGTAATTTCAAGCAGGTAGCTGCTTCTCCACCATCAGCACTATTTCCTCGAGATGTTGAAGAAGCTGCTATCCTGCTAATGGACCTATCTTCTGGCCTAAGTATGAACCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

361

Amino Acids

39.2

Weight (kDa)

9.34

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 209 - 243 2.6e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AarI CACCTGC 1 cut(s) 758
AbsI CCTCGAGG 1 cut(s) 672
Acc36I ACCTGC 2 cut(s) 758, 973
AccB1I GGYRCC 1 cut(s) 773
AciI CCGC 2 cut(s) 126, 810
AclWI GGATC 4 cut(s) 90, 194, 474, 723
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 2 cut(s) 55, 705
AcuI CTGAAG 2 cut(s) 759, 780
AfaI GTAC 2 cut(s) 10, 196
AfiI CCNNNNNNNGG 4 cut(s) 125, 463, 657, 1048
AgsI TTSAA 3 cut(s) 53, 979, 1028
AluBI AGCT 6 cut(s) 570, 743, 800, 967, 989, 1034
AluI AGCT 6 cut(s) 570, 743, 800, 967, 989, 1034
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 4 cut(s) 90, 194, 474, 723
Ama87I CYCGRG 3 cut(s) 12, 672, 1017
AoxI GGCC 4 cut(s) 407, 781, 786, 1063
ApoI RAATTY 2 cut(s) 55, 705
ArsI GACNNNNNNTTYG 2 cut(s) 499, 531
AspS9I GGNCC 5 cut(s) 337, 668, 677, 782, 1051
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 3 cut(s) 12, 672, 1017
AvaII GGWCC 4 cut(s) 337, 668, 677, 1051
BanI GGYRCC 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 514
BccI CCATC 2 cut(s) 40, 1009
BceAI ACGGC 1 cut(s) 599
BclI TGATCA 4 cut(s) 175, 280, 361, 523
BcnI CCSGG 1 cut(s) 785
BfaI CTAG 4 cut(s) 192, 224, 921, 936
BfmI CTRYAG 1 cut(s) 927
BfuAI ACCTGC 2 cut(s) 758, 973
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 4 cut(s) 337, 668, 677, 1051
BmeT110I CYCGRG 3 cut(s) 12, 672, 1017
BmgT120I GGNCC 5 cut(s) 337, 668, 677, 782, 1051
BmiI GGNNCC 2 cut(s) 679, 775
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 2 cut(s) 432, 538
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 3 cut(s) 27, 655, 687
BpuMI CCSGG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 463, 657, 1048
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 3 cut(s) 410, 550, 763
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 4 cut(s) 125, 463, 657, 1048
BseMI GCAATG 1 cut(s) 700
BseNI ACTGG 3 cut(s) 410, 550, 763
BseRI GAGGAG 2 cut(s) 19, 676
BshFI GGCC 4 cut(s) 409, 783, 788, 1065
BshNI GGYRCC 1 cut(s) 773
BsiHKAI GWGCWC 1 cut(s) 514
BsiHKCI CYCGRG 3 cut(s) 12, 672, 1017
BsiSI CCGG 3 cut(s) 464, 780, 785
BslFI GGGAC 2 cut(s) 458, 663
BslI CCNNNNNNNGG 4 cut(s) 125, 463, 657, 1048
BsmFI GGGAC 2 cut(s) 458, 663
BsnI GGCC 4 cut(s) 409, 783, 788, 1065
BsoBI CYCGRG 3 cut(s) 12, 672, 1017
Bsp1286I GDGCHC 1 cut(s) 514
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 2 cut(s) 126, 810
BspANI GGCC 4 cut(s) 409, 783, 788, 1065
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 2 cut(s) 679, 775
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 2 cut(s) 758, 973
BspPI GGATC 4 cut(s) 90, 194, 474, 723
BspT107I GGYRCC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 779
BsrI ACTGG 3 cut(s) 410, 550, 763
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 732
Bst4CI ACNGT 4 cut(s) 208, 341, 874, 917
Bst6I CTCTTC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 1067
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 1 cut(s) 310
BstMWI GCNNNNNNNGC 9 cut(s) 71, 555, 564, 567, 743, 749, 752, 780, 809
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 1 cut(s) 927
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 2 cut(s) 186, 728
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 2 cut(s) 186, 728
BsuRI GGCC 4 cut(s) 409, 783, 788, 1065
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 357, 879
BveI ACCTGC 2 cut(s) 758, 973
CciI TCATGA 1 cut(s) 903
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 5 cut(s) 337, 668, 677, 782, 1051
Csp6I GTAC 2 cut(s) 9, 195
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 4 cut(s) 389, 458, 733, 904
CviQI GTAC 2 cut(s) 9, 195
DdeI CTNAG 1 cut(s) 1067
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 732
Eco47I GGWCC 4 cut(s) 337, 668, 677, 1051
Eco57I CTGAAG 2 cut(s) 759, 780
Eco88I CYCGRG 3 cut(s) 12, 672, 1017
EcoO109I RGGNCCY 1 cut(s) 677
EcoRI GAATTC 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 4 cut(s) 392, 461, 736, 907
FaqI GGGAC 2 cut(s) 458, 663
FatI CATG 4 cut(s) 388, 457, 732, 903
FauNDI CATATG 2 cut(s) 121, 257
FbaI TGATCA 4 cut(s) 175, 280, 361, 523
FokI GGATG 1 cut(s) 297
FspBI CTAG 4 cut(s) 192, 224, 921, 936
HaeIII GGCC 4 cut(s) 409, 783, 788, 1065
HapII CCGG 3 cut(s) 464, 780, 785
Hin1II CATG 4 cut(s) 392, 461, 736, 907
HinfI GANTC 1 cut(s) 164
HpaII CCGG 3 cut(s) 464, 780, 785
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 3 cut(s) 24, 322, 631
Hpy188III TCNNGA 6 cut(s) 518, 533, 852, 904, 1019, 1083
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 3 cut(s) 433, 519, 914
HpyCH4III ACNGT 4 cut(s) 208, 341, 874, 917
HpyCH4V TGCA 7 cut(s) 357, 445, 636, 693, 755, 882, 929
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 555, 564, 567, 743, 749, 752, 780, 809
HpyF3I CTNAG 1 cut(s) 1067
Hsp92II CATG 4 cut(s) 392, 461, 736, 907
Ksp22I TGATCA 4 cut(s) 175, 280, 361, 523
LweI GCATC 2 cut(s) 432, 538
MaeI CTAG 4 cut(s) 192, 224, 921, 936
MaeIII GTNAC 3 cut(s) 395, 684, 868
MboII GAAGA 7 cut(s) 91, 291, 395, 738, 898, 1040, 1050
MflI RGATCY 2 cut(s) 186, 728
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 6 cut(s) 55, 274, 369, 576, 705, 973
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 6 cut(s) 328, 654, 668, 681, 708, 1026
MseI TTAA 2 cut(s) 572, 585
MspA1I CMGCKG 2 cut(s) 800, 967
MspI CCGG 3 cut(s) 464, 780, 785
MspR9I CCNGG 1 cut(s) 785
MwoI GCNNNNNNNGC 9 cut(s) 71, 555, 564, 567, 743, 749, 752, 780, 809
NciI CCSGG 1 cut(s) 785
NcoI CCATGG 1 cut(s) 732
NdeI CATATG 2 cut(s) 121, 257
NlaIII CATG 4 cut(s) 392, 461, 736, 907
NlaIV GGNNCC 2 cut(s) 679, 775
NmuCI GTSAC 2 cut(s) 684, 868
PaeR7I CTCGAG 3 cut(s) 12, 672, 1017
PagI TCATGA 1 cut(s) 903
PaqCI CACCTGC 1 cut(s) 758
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 677
PsiI TTATAA 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 677
PspN4I GGNNCC 2 cut(s) 679, 775
PspPI GGNCC 5 cut(s) 337, 668, 677, 782, 1051
PspPPI RGGWCCY 1 cut(s) 677
PspXI VCTCGAGB 2 cut(s) 12, 672
PstI CTGCAG 1 cut(s) 931
PsuI RGATCY 2 cut(s) 186, 728
PvuII CAGCTG 2 cut(s) 800, 967
RsaI GTAC 2 cut(s) 10, 196
RsaNI GTAC 2 cut(s) 9, 195
SaqAI TTAA 2 cut(s) 572, 585
Sau96I GGNCC 5 cut(s) 337, 668, 677, 782, 1051
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 514
SfaNI GCATC 2 cut(s) 432, 538
SfcI CTRYAG 1 cut(s) 927
Sfr274I CTCGAG 3 cut(s) 12, 672, 1017
SinI GGWCC 4 cut(s) 337, 668, 677, 1051
SlaI CTCGAG 3 cut(s) 12, 672, 1017
SmlI CTYRAG 3 cut(s) 12, 672, 1017
SmoI CTYRAG 3 cut(s) 12, 672, 1017
Sse9I AATT 6 cut(s) 55, 274, 369, 576, 705, 973
SsiI CCGC 2 cut(s) 126, 810
SspMI CTAG 4 cut(s) 192, 224, 921, 936
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 4 cut(s) 208, 341, 874, 917
TaqI TCGA 5 cut(s) 13, 428, 532, 673, 1018
TaqII GACCGA 1 cut(s) 923
TasI AATT 6 cut(s) 55, 274, 369, 576, 705, 973
TatI WGTACW 1 cut(s) 8
Tru1I TTAA 2 cut(s) 572, 585
Tru9I TTAA 2 cut(s) 572, 585
TscAI CASTG 2 cut(s) 364, 879
TseFI GTSAC 2 cut(s) 684, 868
Tsp45I GTSAC 2 cut(s) 684, 868
TspDTI ATGAA 5 cut(s) 91, 299, 396, 449, 474
TspRI CASTG 2 cut(s) 364, 879
VpaK11BI GGWCC 4 cut(s) 337, 668, 677, 1051
XapI RAATTY 2 cut(s) 55, 705
XhoI CTCGAG 3 cut(s) 12, 672, 1017
XspI CTAG 4 cut(s) 192, 224, 921, 936
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.