Rw6G043360

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013620
Physical Location & Seq
Reverse (-)
66707110 .. 66709739
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043360.1

Sequence Viewer

Length: 1080 bp
ATGGGGAGTACTCCAACATATCTGAACCCACCATCCTTTCCTTTCTCCCTTGAAAATTTTGTAGCAGATCAAGCAGCACAGGATCAACGCCTAAAACTCTTCATCTCATCATCACTACCATATGGCGGTGCTTCTTGTTCTCTCTCATTTCCTGCTTTCTTTGACTCCCTTACTGATCAGTCGGGGATCTCTAGTACGAGTATTACTGTTGGAGATCAAGCCCTACTATATAAGGGGCAAAGGGCAAATAAGTGCATATGGCAAGGTGAAACAAGTTATGATCAAGTATGCTCATCCTCTTCTTTAGTTCATCCTGTGTCCGATGTTAGCAACGAGGAGTACCGTAAGTTATCTGTATCCACTGATCAAATAATAGAGAATAATGAAGACCATGAGAGTAACACCAATAGGCCAGTAAAGTGGACACCCTTGACGATGAAGTTGATGCAAAAGATGACCCATGAACCGGATCAAGTGCCTGAAAAAATTCCCCTTACTTATAAGTTCCAAAGTGCTCGTCGTGATGATCAGCATCGAGAAACTAATACTGGCGAAACCAGCAGCAGCAGCAGCTTAACAATTTCCACCAACAAGAGTAGTAGCAGTATAGTGTCTGCCGTTAGGGTTTGTTCGGATTGCAGCACCAACACAACCCCACTTTGGAGGAGTGGTCCTCGAGGTCCCAAGTCACTATGCAATGCGTGTGGAATTCGACAGAGGAAAGCGAGAAGATCCATGGCTGAAGCTGCTGCTGCAACTGGATTGGCAGGTGGGACCACCGGCGCGGCCGCTACTTCAGCTGCTACTACCGCCAAATCATCATCTATGAGTAAGGGGAAAAAGTCACGACAAAACCACCATGTCACAGTGAGTTGCAAGAAGAAAAGAAAACTCATCATGACCGACGACAGTACGAGTACTGCAGCACCTAGCATATATTACAAGAGAAATGATAAACAGCTCTGTAATTTCAAGCAGGTAGCTGCTTCTCCACCATCAGCACTATTTCCTCGAGATGTTGAAGAAGCTGCTATCCTGCTAATGGACCTATCTTCTGGCCTAAGTATGAACCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

359

Amino Acids

38.9

Weight (kDa)

9.06

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 210 - 244 2.6e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 758
AbsI CCTCGAGG 1 cut(s) 675
Acc36I ACCTGC 2 cut(s) 758, 967
AccII CGCG 1 cut(s) 785
AciI CCGC 4 cut(s) 126, 785, 789, 810
AclWI GGATC 4 cut(s) 90, 194, 477, 726
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 3 cut(s) 55, 486, 708
AcuI CTGAAG 2 cut(s) 762, 780
AfaI GTAC 5 cut(s) 10, 196, 341, 913, 919
AfiI CCNNNNNNNGG 4 cut(s) 125, 466, 660, 1042
AgsI TTSAA 3 cut(s) 53, 973, 1022
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 6 cut(s) 573, 746, 800, 961, 983, 1028
AluI AGCT 6 cut(s) 573, 746, 800, 961, 983, 1028
Alw21I GWGCWC 1 cut(s) 517
AlwI GGATC 4 cut(s) 90, 194, 477, 726
Ama87I CYCGRG 2 cut(s) 675, 1011
AoxI GGCC 3 cut(s) 410, 786, 1057
ApoI RAATTY 3 cut(s) 55, 486, 708
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 4 cut(s) 671, 680, 774, 1045
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 2 cut(s) 675, 1011
AvaII GGWCC 4 cut(s) 671, 680, 774, 1045
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 517
BccI CCATC 2 cut(s) 40, 1003
BceAI ACGGC 1 cut(s) 602
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 4 cut(s) 175, 280, 364, 526
BfaI CTAG 2 cut(s) 192, 930
BfmI CTRYAG 1 cut(s) 921
BfuAI ACCTGC 2 cut(s) 758, 967
BfuI GTATCC 1 cut(s) 367
BmcAI AGTACT 2 cut(s) 10, 919
Bme18I GGWCC 4 cut(s) 671, 680, 774, 1045
BmeT110I CYCGRG 2 cut(s) 675, 1011
BmgT120I GGNCC 4 cut(s) 671, 680, 774, 1045
BmiI GGNNCC 2 cut(s) 682, 775
BmsI GCATC 2 cut(s) 435, 541
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 2 cut(s) 658, 690
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 466, 660, 1042
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 3 cut(s) 413, 553, 763
Bse3DI GCAATG 1 cut(s) 703
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 735
BseGI GGATG 3 cut(s) 32, 293, 310
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 4 cut(s) 125, 466, 660, 1042
BseMI GCAATG 1 cut(s) 703
BseNI ACTGG 3 cut(s) 413, 553, 763
BseRI GAGGAG 2 cut(s) 350, 679
BseX3I CGGCCG 1 cut(s) 786
Bsh1236I CGCG 1 cut(s) 785
Bsh1285I CGRYCG 1 cut(s) 789
BshFI GGCC 3 cut(s) 412, 788, 1059
BsiEI CGRYCG 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 2 cut(s) 675, 1011
BsiSI CCGG 2 cut(s) 467, 780
BslFI GGGAC 2 cut(s) 666, 787
BslI CCNNNNNNNGG 4 cut(s) 125, 466, 660, 1042
BsmFI GGGAC 2 cut(s) 666, 787
BsnI GGCC 3 cut(s) 412, 788, 1059
BsoBI CYCGRG 2 cut(s) 675, 1011
Bsp1286I GDGCHC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 4 cut(s) 126, 785, 789, 810
BspANI GGCC 3 cut(s) 412, 788, 1059
BspFNI CGCG 1 cut(s) 785
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 2 cut(s) 682, 775
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 2 cut(s) 758, 967
BspPI GGATC 4 cut(s) 90, 194, 477, 726
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 779
BsrI ACTGG 3 cut(s) 413, 553, 763
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 1 cut(s) 735
BssT1I CCWWGG 1 cut(s) 735
Bst4CI ACNGT 4 cut(s) 208, 344, 868, 911
Bst6I CTCTTC 2 cut(s) 104, 304
BstDEI CTNAG 1 cut(s) 1061
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 3 cut(s) 32, 293, 310
BstFNI CGCG 1 cut(s) 785
BstHHI GCGC 1 cut(s) 785
BstMCI CGRYCG 1 cut(s) 789
BstMWI GCNNNNNNNGC 8 cut(s) 71, 558, 567, 570, 746, 752, 797, 809
BstSFI CTRYAG 1 cut(s) 921
BstUI CGCG 1 cut(s) 785
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 186, 731
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 2 cut(s) 186, 731
BstZI CGGCCG 1 cut(s) 786
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 3 cut(s) 412, 788, 1059
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 3 cut(s) 32, 293, 310
BtsIMutI CAGTG 2 cut(s) 360, 873
BveI ACCTGC 2 cut(s) 758, 967
CciI TCATGA 1 cut(s) 897
CciNI GCGGCCGC 1 cut(s) 786
CfoI GCGC 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 4 cut(s) 671, 680, 774, 1045
Csp6I GTAC 5 cut(s) 9, 195, 340, 912, 918
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 5 cut(s) 392, 461, 736, 860, 898
CviQI GTAC 5 cut(s) 9, 195, 340, 912, 918
DdeI CTNAG 1 cut(s) 1061
EaeI YGGCCR 1 cut(s) 786
EagI CGGCCG 1 cut(s) 786
Eam1104I CTCTTC 2 cut(s) 104, 304
EarI CTCTTC 2 cut(s) 104, 304
EclXI CGGCCG 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 735
Eco47I GGWCC 4 cut(s) 671, 680, 774, 1045
Eco52I CGGCCG 1 cut(s) 786
Eco57I CTGAAG 2 cut(s) 762, 780
Eco88I CYCGRG 2 cut(s) 675, 1011
EcoO109I RGGNCCY 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 5 cut(s) 395, 464, 739, 863, 901
FaqI GGGAC 2 cut(s) 666, 787
FatI CATG 5 cut(s) 391, 460, 735, 859, 897
FauNDI CATATG 2 cut(s) 121, 257
FbaI TGATCA 4 cut(s) 175, 280, 364, 526
FokI GGATG 3 cut(s) 19, 280, 297
FspBI CTAG 2 cut(s) 192, 930
GlaI GCGC 1 cut(s) 784
HaeIII GGCC 3 cut(s) 412, 788, 1059
HapII CCGG 2 cut(s) 467, 780
HhaI GCGC 1 cut(s) 785
Hin1II CATG 5 cut(s) 395, 464, 739, 863, 901
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 467, 780
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 3 cut(s) 24, 322, 634
Hpy188III TCNNGA 6 cut(s) 521, 536, 846, 898, 1013, 1077
Hpy8I GTNNAC 1 cut(s) 423
Hpy99I CGWCG 2 cut(s) 522, 908
HpyCH4III ACNGT 4 cut(s) 208, 344, 868, 911
HpyCH4V TGCA 7 cut(s) 255, 448, 639, 696, 755, 876, 923
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 558, 567, 570, 746, 752, 797, 809
HpyF3I CTNAG 1 cut(s) 1061
Hsp92II CATG 5 cut(s) 395, 464, 739, 863, 901
HspAI GCGC 1 cut(s) 783
Ksp22I TGATCA 4 cut(s) 175, 280, 364, 526
LweI GCATC 2 cut(s) 435, 541
MaeI CTAG 2 cut(s) 192, 930
MaeIII GTNAC 4 cut(s) 398, 687, 843, 862
MboII GAAGA 7 cut(s) 91, 291, 398, 741, 892, 1034, 1044
MflI RGATCY 2 cut(s) 186, 731
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 5 cut(s) 55, 486, 579, 708, 967
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 38, 190
MnlI CCTC 7 cut(s) 307, 328, 657, 671, 684, 711, 1020
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 2 cut(s) 467, 780
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 8 cut(s) 71, 558, 567, 570, 746, 752, 797, 809
NcoI CCATGG 1 cut(s) 735
NdeI CATATG 2 cut(s) 121, 257
NlaIII CATG 5 cut(s) 395, 464, 739, 863, 901
NlaIV GGNNCC 2 cut(s) 682, 775
NmuCI GTSAC 3 cut(s) 687, 843, 862
NotI GCGGCCGC 1 cut(s) 786
PaeR7I CTCGAG 2 cut(s) 675, 1011
PagI TCATGA 1 cut(s) 897
PaqCI CACCTGC 1 cut(s) 758
PdmI GAANNNNTTC 1 cut(s) 486
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 680
PsiI TTATAA 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 680
PspN4I GGNNCC 2 cut(s) 682, 775
PspPI GGNCC 4 cut(s) 671, 680, 774, 1045
PspPPI RGGWCCY 1 cut(s) 680
PspXI VCTCGAGB 1 cut(s) 675
PstI CTGCAG 1 cut(s) 925
PsuI RGATCY 2 cut(s) 186, 731
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 5 cut(s) 10, 196, 341, 913, 919
RsaNI GTAC 5 cut(s) 9, 195, 340, 912, 918
SaqAI TTAA 1 cut(s) 575
Sau96I GGNCC 4 cut(s) 671, 680, 774, 1045
ScaI AGTACT 2 cut(s) 10, 919
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 2 cut(s) 435, 541
SfcI CTRYAG 1 cut(s) 921
Sfr274I CTCGAG 2 cut(s) 675, 1011
SgrAI CRCCGGYG 1 cut(s) 779
SinI GGWCC 4 cut(s) 671, 680, 774, 1045
SlaI CTCGAG 2 cut(s) 675, 1011
SmlI CTYRAG 2 cut(s) 675, 1011
SmoI CTYRAG 2 cut(s) 675, 1011
Sse9I AATT 5 cut(s) 55, 486, 579, 708, 967
SsiI CCGC 4 cut(s) 126, 785, 789, 810
SspMI CTAG 2 cut(s) 192, 930
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 4 cut(s) 208, 344, 868, 911
TaqI TCGA 4 cut(s) 535, 676, 712, 1012
TaqII GACCGA 1 cut(s) 917
TasI AATT 5 cut(s) 55, 486, 579, 708, 967
TatI WGTACW 2 cut(s) 8, 917
TauI GCSGC 2 cut(s) 788, 791
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 2 cut(s) 367, 873
TseFI GTSAC 3 cut(s) 687, 843, 862
Tsp45I GTSAC 3 cut(s) 687, 843, 862
TspDTI ATGAA 5 cut(s) 91, 299, 399, 452, 477
TspRI CASTG 2 cut(s) 367, 873
VpaK11BI GGWCC 4 cut(s) 671, 680, 774, 1045
XapI RAATTY 3 cut(s) 55, 486, 708
XhoI CTCGAG 2 cut(s) 675, 1011
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 192, 930
ZrmI AGTACT 2 cut(s) 10, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.